BGIOSGA006653

From RiceWiki
Revision as of 18:41, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA006653

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA006653, complete gene.

LocusTag

OSJNBA0073G17.27

Ensembl Transcript ID

BGIOSGA006653-TA

Ensembl Protein ID

BGIOSGA006653-PA

Length

6648

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:12121780..12128427

Sequence Coding Region

12128394..12128427,12127900..12128060,12124542..12124598,12124242..12124311,12121780..12123950

Genome Context

<gbrowseImage1> name=IndicaChromosome02:12121780..12128427 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:12121780..12128427 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGCGCAGCCTTCTTCGTCGGCGTCGACGGGCGCTACCAAGTTTGATGCATCGCAGTATGCTTTCTTTGGGAACAACGCGGTGGAAGAGGTTGAGCTAGGTGGATTGGAGGATGATGATGGTGTCGATGCTGGTTTTGTTGGCCCTGGTGATGAAGAATACCCTTCTGCTTATGGAAGGGATATGTTTGAGGATGAAGGTGGAGGTTCATTTACTGGTGTTGATGATCTTGCTGGAGCATTCTCAAAGTTGACCAGAAGCATCAATGAACCAACACAATCGGGAATAATTAGTCATGGGGGTTCAATTTCTAGACAAAGTTCTACTCCGGATTGGGCACAAGATTCATATTGGCCTACGCAGCCTATATTTGGAGCTGAACAAGGGCTGGATAATGAAAGCCGGTGGTCTCAACCACCCCATTTAGCCCGCTTTGCTGATTCTAGACTGCACAGAACATCCTCATCGCCGCAGCAAGATGCTCAATACAATCCTAATGAACATATTCTTGGAGCAATGCCATCTCCGTTGCATAGAACTTCATCATACCCACAACAAGAGCCTCAATACAATCACACAGAACCAATTCCGGTACCTAAATCATCATTCATTTCGTACCCTCCATCTGGTGCAGTATCCCATTCTTCACCAGGTCAACCACATCACATGAACATGCCATCTCCTCCCACTTCATTCCAAATGCCTGTATCTGCACAAAATGAGTTACACCATCCCCAGTTTCCTCGTGGTGGTATGCCTCCAGGGCCACTTGGTCGGAACATGGCTCATTTGGATTCAGCAGGTTTATCAACTAATAATTTGCAACAGAATGCTCTAAACAGTGGGCCAATTCGTCCAAATGGTGCCATGCTTACACCAGGTTTGGTGCAGCACAATCTGCAGCGTCCAAATGGATTGGTCCCACCTCAAATGCTGTCACGCCGTCCACAACATGGAATGGCCCCAATTCAACACTCTCCACCACAATTCTCACAGTTCCATGCTCAGATGCTTGGTCCTCGGCATCCTCCACCACAAGGTCGTCAGATGTACAATCCTCAGCATTCATCACAAATGATGAGTGGATTTGATGCAAATTTGGCAATGCCTGACTTGAGTGATCCGAGAGCAAGAGCAATGCTGCACCATGGAGTGCATGGCCAGCATTATCTCCCCCAAGGTTTTGAGCTTGCCAGTATGAGGATGGATAATGGGTGGCCGCGGTTCAGATCCAAGTACATGTCCACGGCTGAAATTGAGAACATTGCAAGGATGCAGCAAGCTGCTACTCAGATCAATGATCCGTACATTGATGATTACTATCATCAAGCCTGTTTAGCTAAAAAGTCAGCAGGAGGTCAACTCAAGCACCACTTCTGTCCGACCTTGATTAGAGATCCATCATCCCGTGCACGGAGTAAAGATGAGCCACATGCATATCTCCAGGTTGATGCTCTTGGAAGGTTACCATTTTCTTCCATCCGCAGGCCTCGTCCGCTCCTCGATGTTGAACAAACCTCTGAATCAAGTGATGACGTTACTGAAAAATCTGCTTCAAAAACACTTGACCAAGAACCAATGCTGGCTGCTAGGATCACAATTGAAGATGGCCTTTGCCTACTGCTTGATGTAGATGATATTGATCGCTTGCTGCAATTTAGTCAGCAGCAAGATGGTGGCTTGCAACTGAGAAACAGGAGACAGGCCCTCCTTGAGCAGCTGGCAGAATCGCTGCAACTAGTTGATCCACTTACACCTAGTAACAATGCACCTCTCTCACCAAATGATGATCTGGTGTTTCTCCGAATAGTCTCTCTTCCGAAGGGCCGCAAGCTACTTTCTCGTTACCTTGAACTTGTTAGTTCTGGCAGTGAGCTTGCTAGAATTGCTTGCATGGCAGTCTTCCGGCATCTAAGATTCATATTTGGAAATTTGCCATCTGATAGTAGTGCTGTTGAGACAACGACAAAACTTGCTACTGCTGTATCAACCTGTGTTGTTCGGTTGGAGTTGAGTGGACTAAGTGCTTGCCTTGCAGCTATTGTGTGTTCTTCGTTGCAACCCCCTCTGCGACCCCTTGGACATGCTGCAGGTGATGGGGCTTCTTTCATCATAAAGTCTGTACTGGACAGAGCAACAGAGCTTCTCACTGATCAGCATGTGGCCTCTACCTACAGCATGCAAAACAGAGCTCTATGGCAAGCATCATTTGATGCCTTCTTTGGGCTGCTTACAGAGTATTGCATGAGTAAATTCGATAGTGTGATTCATGCATTGCAAACACAACCTGCTGTGGCAGCAGTTATAAGCAGGGAAATGCCAGTTGAATTGTTGCGTGCCAGCCTTCCTCACACAAATGAGTATCAGCGGAAACAGTTGCTCAGTTTTGCTCAGCGCACGGTGCCTGTTAACAACCATAGTTCTCATGGGTCCAATAATGGACCTATGACATCAGAATCTATCCCAAGTTCAGAAAGCCGGAAAATATAA</cdnaseq>

Protein Sequence

<aaseq>MAAQPSSSASTGATKFDASQYAFFGNNAVEEVELGGLEDDDGVDAGFVGPGDEEYPSAYGRDMFEDEGGGSFTGVDDLAGAFSKLTRSINEPTQSGIISHGGSISRQSSTPDWAQDSYWPTQPIFGAEQGLDNESRWSQPPHLARFADSRLHRTSSSPQQDAQYNPNEHILGAMPSPLHRTSSYPQQEPQYNHTEPIPVPKSSFISYPPSGAVSHSSPGQPHHMNMPSPPTSFQMPVSAQNELHHPQFPRGGMPPGPLGRNMAHLDSAGLSTNNLQQNALNSGPIRPNGAMLTPGLVQHNLQRPNGLVPPQMLSRRPQHGMAPIQHSPPQFSQFHAQMLGPRHPPPQGRQMYNPQHSSQMMSGFDANLAMPDLSDPRARAMLHHGVHGQHYLPQGFELASMRMDNGWPRFRSKYMSTAEIENIARMQQAATQINDPYIDDYYHQACLAKKSAGGQLKHHFCPTLIRDPSSRARSKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEQTSESSDDVTEKSASKTLDQEPMLAARITIEDGLCLLLDVDDIDRLLQFSQQQDGGLQLRNRRQALLEQLAESLQLVDPLTPSNNAPLSPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSELARIACMAVFRHLRFIFGNLPSDSSAVETTTKLATAVSTCVVRLELSGLSACLAAIVCSSLQPPLRPLGHAAGDGASFIIKSVLDRATELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSVIHALQTQPAVAAVISREMPVELLRASLPHTNEYQRKQLLSFAQRTVPVNNHSSHGSNNGPMTSESIPSSESRKI</aaseq>

Gene Sequence

<dnaseqindica>1..34#368..528#3830..3886#4117..4186#4478..6648#ATGGCGGCGCAGCCTTCTTCGTCGGCGTCGACGGGTAATGCAACTCGTCTCTTCTCGTAGATTGCCCCTAGATGGAGAAGATCTTTCCTCTCGTTGATTGGATTATTAGTGTTTGGGACGGTTTATGCTTGTGGCCGGATTAGCTAGCTAACCGAGGTGACTTAGTTTGGGTTGTTTGATTCGTTTTGTTACTTGTATATAGAGATCTAGCCACGAAATATGTTGTCACTTGAGGGGTGGAGCACACCAACAAACAATCCCAACTCAAAATAGCTTCTCCTTTTACCTTCAAATGAAAGGAGTGTGGAGATGCTGTACCATTCAGTACTGATTCCCGGGCTCTTTGATTGTCTCTGCCTCTGTGCAGGCGCTACCAAGTTTGATGCATCGCAGTATGCTTTCTTTGGGAACAACGCGGTGGAAGAGGTTGAGCTAGGTGGATTGGAGGATGATGATGGTGTCGATGCTGGTTTTGTTGGCCCTGGTGATGAAGAATACCCTTCTGCTTATGGAAGGGATATGTTTGAGGTAATATATATGACAGTTCATTTATGTTTGATGTGACAAACTTCCATCCATTATTTATTACTTTCCGTTTAAAAGAACTTTTTCACAGGAAATCAGTGTTTTTTTTATGACAGTGTGTCCAGTATGTAATTTTGTGATTCCCACAGCATTCATGACTTTGGTAGTAAACGCCCTTTTGTGTTCAGAACATGAGAGAGAGAGAGGTGGGAGGTGCTCCTAGGGGTTATTTTGATCATTCCGTTTTACTTCTTGTTTGTTTTCGTTGTTGTTCAATCCAACGGGAATTAATACTTTGTATATCATGGTTCAGTAAGAGGTAGCAGGGTCCACCCGAACACTAGAGATTTATGTTGAATGAAGAGTAAATAGTAAGCATCGGTGTTATGGTAGCTTCAGAGGATGCACATAGTCCCTGAGACTGTGGACTCATGATGCGGAAGCCTTGGACCATGCTGTGTCAACCATTGAAAGGAGAGAGGGACATCAGTTGAGGAAGGGAAGAGGGAGAACTAAGCTTAGACATTGTTGTTTCTTGCCATTGTTATTGCTGGAACTTTTCTTTGGTTCTGTCACTACCATGATTTCTGCTCGCCCTTGCAATTCATTTTCTAGAGTCACTTCAGGTTAGATAGCACCTTTGTTATGCATTATCTGCTGTAGCATCCTGCAGAGAGAAGCAGCCAATCAACAGAAGGGTAAATTTGGGATGGACTAGGAAAGTAGCAAATGGGGTGTGTTGAGTTGGGGTGTTTCGTAACTATCCCAATCTGCACTGGTTAACTGTGTTTGATCAGTATTTGTTACAGTGTTTGAGAACATGTTTTGACATTTTGCTTTATTGGGTAAAAACTGGCTAGAAACTGAATATACCAACAATACTGAATAACATGAACCTGGCCTTTTGGTGTCTTGTGTGCTGCGACATGTTTCTGTCTCCGCAAGCCCAGATTGATAGTCTTCTTGGCTCAGTTGCCCAGTTGACCAACTTTCCAACAATTAGCGGCCACTTGTTTTGACCGGCCAATACTGGCAGCAAAACCAACATAAGCACCTACTATTGCTTGTTCATGTTCATCAGTAAGCTGCTTGAGTGATTGTCACTGTTTTATTATCCTGCATGTGGTTGTGTGCATGCATGGATTTATTTCTCGTCTCATTTGTTAACTGTCAGCTGTCATTCTTAGTTTGTAATTATGTTAAAAAAGAGTTGAGGATCAGCTTTACAGATCGTGTAAAGCCGTAAACTTTTGTAAATATGGTATTTACCAGTGTGGAACCGAAACAATTTGTATCTACCAATAGCACAATAACGATCTGTATTTTTGTAAATATAATGTATTTACCAAAAAAATAATACCATATTTACCACACAGAATTTAACGAAAATACTGTGTTGAAAGGTAGGGGTCGATGTTCTGTTTCATCGGTTTAGTCAGGTCGATTTCTTCTGTTTTCATAAAATTTGGTTTCTCGATAATAGCCACCGAGGAATTTCTTTTTACGAATATAAACCGAGCCGAAAAAACCAAATAAAATCGACTCGGTAGTTACAGCGAATGGTTTTTACCGAAGAATCTCATAATAAGGCGACAGGCGCTTGCGTTGCTGTCGAGCCTCTGCGTTGCCATGCTGAGGTGCAGCTGTGGGGGTTCCAGCTCTGGAGAGCTCCTGCCCTGCGCACAGCCCCCACTCTGATGGGCTACGGAGCCAGCGCCCAGTCCATGATGCTGCCCGTGCCGCTAGCCTCACTCTCCGCCTGCTCACGCTGGCTGCTCATGTTGCCTGCTGCCTGCACGCCTGCGCCAATGCACCACCCGTCTTCTCCTGCTCGCAGCTTGCACCACGCTTGTCTACTAAAGAATTGAGAGATGTGAGAGATTTGCCGTGAGATTTGTGGCTGTGGCATGTGACTGCCTTATCAGCTTATCTCCACCAATGTGATATGGCTGGGTTGTGGGATGCATGGATGAGCCTTGCATCGACTAAGCTCACATTAAACTTCAAGTGAGCTCAGTTTGAGCCAAGCTGGATCCTGAGCTAGAGAACTGGCTTCATTTTTTAGTAGAGAATAAAATCAAGGTTCAAAATTTTATGATAGGTACGCAGCAGTTCACCCCCCTAGTAGCTATCCAAGGATCACTGATTCAGCAGAAACTGCTGTTCCCTACACGATTTGCATGTCATACAACATATCGGAACCTTTCCCCTGCCATCACCTCATGGTAAGTACGATCACCTGGGGGAGAAGAAATAGAAGCAGATTTGCTATCTCTGATAGCAAGGTCGAGAATTTGGGGAATTGGAGGAGGGGTAACAGCTGGAAACTTGGCATGTAATGGTGGGGGAGAGGACTGGGTGAAGTAGGAAGGGAACATAATAGTAGAATGCGCCTTGGAACATTTGGCAACTGCAGTCACGTGGTACGGAGCACGGCTTCATGTCTCCAAGTGTCAAGTTAATATAGGTTACTTTATTGAGTGTACTCTCCTTTCATTTTTCTTTATTTCAATTTAGGTTTGCTGACTGGCCAACAGCATGCAGGAAGCAGTGGGCCTTATGTGCGTGTATTTAGGCCTTTTATGTATACAATTTTGGGACCCTCAGTAGTTTACCTGTTATTTTATTGAGTAGCTGAGAATGATCACAAAATCGTTTTACTGGTATCCTGCGTTGGTGTTACATAGGTAATGATTATATTTCATAACAGGCAATTATGCAGCAATAGGCAGGGAGTGTTCATTCCTCGTATATGCCTGAGTGTGGACCAAATGGATCTAGGAGTTGGCTCTGGAAGGCATATGTTACTGGTCAAGCTTTCTTTGGCCCGTGCCCGTAAAAAATGTCTAGTAGACCTGTTATAGAAAACTACTGGATTTTCTGCACACTGCTACTCTTGAAAACTTTGTAGAGTTCAATTAATTTTATTTTAGTGGAAATAATATTTCACCAAAAAAGTTGCCTTGCAATCTGAGGTAGCTTGTAATTTCTCTTCTGCAGAGTTGTTTATTAACACAAGTCCACCTCTCATTATACTAGAGGTTGTTTTATCTCATTATCTGTAGTTCTGAGCAAATTTAGCTCAGGAAATAGTGCAGTTATTATCTGGATCATTTCCAGGTTATGTTATTGTCATAGTTTTCTTCACTTAGTGTTGGGGCCTAAATAACAGATTAAGCTGTGATTTAGAATTATGTGCTTCTGATTACCTTAGAAGATTGCAGTATCACGCTATTACTTATTTATGTTGCAAATTAAGTTATCAGCTTCAGCTGCTCACACTGATCAAGCTTTGCTTTTGCAGGATGAAGGTGGAGGTTCATTTACTGGTGTTGATGATCTTGCTGGAGCATTCTCAAAGGTTTGCTTTTTTGAAAAGCATAGCTTTGTAGCCACATAGTATTAATACACAAATGTCCAATTATTGGGATTTGATCCAACAGAAACATGGTGTATTTTTTTTGGTAGAAATTGCAGAATGTAGATTATAGTTAAATAAAGTTGCAAACTCTTGTATACCTATTTGTATGCTTGCATTGTGGTATTCTTTTTTAACTGTGAAAACTGATTTGTTGATTTCTCCACTTTCAGTTGACCAGAAGCATCAATGAACCAACACAATCGGGAATAATTAGTCATGGGGGTTCAATTTCTAGACAAAGTGAGTAATGCCCTGTTTTGCTCGATTGCAATTGGAATCCTTTGCTACTTCTTTATGTGTTTCTTCAATTCACGTGCATGGGTATTTGATTTATTTCATTTTTCAAGGATATATGTAAGATTCGATTCGTTACATCTGGCCAATGGGATGGACATATCCATTAATTTTTCATTGTTAGAATGTGAATTTCAATACATTTTTGCACAGTCTTTGTTCTCTTGTTGGGTACTGCAGGATTATATATGGTTTCTGTTTTATTAACATTGTATTCTAATGATTCAATTTGTCTAGGTTCTACTCCGGATTGGGCACAAGATTCATATTGGCCTACGCAGCCTATATTTGGAGCTGAACAAGGGCTGGATAATGAAAGCCGGTGGTCTCAACCACCCCATTTAGCCCGCTTTGCTGATTCTAGACTGCACAGAACATCCTCATCGCCGCAGCAAGATGCTCAATACAATCCTAATGAACATATTCTTGGAGCAATGCCATCTCCGTTGCATAGAACTTCATCATACCCACAACAAGAGCCTCAATACAATCACACAGAACCAATTCCGGTACCTAAATCATCATTCATTTCGTACCCTCCATCTGGTGCAGTATCCCATTCTTCACCAGGTCAACCACATCACATGAACATGCCATCTCCTCCCACTTCATTCCAAATGCCTGTATCTGCACAAAATGAGTTACACCATCCCCAGTTTCCTCGTGGTGGTATGCCTCCAGGGCCACTTGGTCGGAACATGGCTCATTTGGATTCAGCAGGTTTATCAACTAATAATTTGCAACAGAATGCTCTAAACAGTGGGCCAATTCGTCCAAATGGTGCCATGCTTACACCAGGTTTGGTGCAGCACAATCTGCAGCGTCCAAATGGATTGGTCCCACCTCAAATGCTGTCACGCCGTCCACAACATGGAATGGCCCCAATTCAACACTCTCCACCACAATTCTCACAGTTCCATGCTCAGATGCTTGGTCCTCGGCATCCTCCACCACAAGGTCGTCAGATGTACAATCCTCAGCATTCATCACAAATGATGAGTGGATTTGATGCAAATTTGGCAATGCCTGACTTGAGTGATCCGAGAGCAAGAGCAATGCTGCACCATGGAGTGCATGGCCAGCATTATCTCCCCCAAGGTTTTGAGCTTGCCAGTATGAGGATGGATAATGGGTGGCCGCGGTTCAGATCCAAGTACATGTCCACGGCTGAAATTGAGAACATTGCAAGGATGCAGCAAGCTGCTACTCAGATCAATGATCCGTACATTGATGATTACTATCATCAAGCCTGTTTAGCTAAAAAGTCAGCAGGAGGTCAACTCAAGCACCACTTCTGTCCGACCTTGATTAGAGATCCATCATCCCGTGCACGGAGTAAAGATGAGCCACATGCATATCTCCAGGTTGATGCTCTTGGAAGGTTACCATTTTCTTCCATCCGCAGGCCTCGTCCGCTCCTCGATGTTGAACAAACCTCTGAATCAAGTGATGACGTTACTGAAAAATCTGCTTCAAAAACACTTGACCAAGAACCAATGCTGGCTGCTAGGATCACAATTGAAGATGGCCTTTGCCTACTGCTTGATGTAGATGATATTGATCGCTTGCTGCAATTTAGTCAGCAGCAAGATGGTGGCTTGCAACTGAGAAACAGGAGACAGGCCCTCCTTGAGCAGCTGGCAGAATCGCTGCAACTAGTTGATCCACTTACACCTAGTAACAATGCACCTCTCTCACCAAATGATGATCTGGTGTTTCTCCGAATAGTCTCTCTTCCGAAGGGCCGCAAGCTACTTTCTCGTTACCTTGAACTTGTTAGTTCTGGCAGTGAGCTTGCTAGAATTGCTTGCATGGCAGTCTTCCGGCATCTAAGATTCATATTTGGAAATTTGCCATCTGATAGTAGTGCTGTTGAGACAACGACAAAACTTGCTACTGCTGTATCAACCTGTGTTGTTCGGTTGGAGTTGAGTGGACTAAGTGCTTGCCTTGCAGCTATTGTGTGTTCTTCGTTGCAACCCCCTCTGCGACCCCTTGGACATGCTGCAGGTGATGGGGCTTCTTTCATCATAAAGTCTGTACTGGACAGAGCAACAGAGCTTCTCACTGATCAGCATGTGGCCTCTACCTACAGCATGCAAAACAGAGCTCTATGGCAAGCATCATTTGATGCCTTCTTTGGGCTGCTTACAGAGTATTGCATGAGTAAATTCGATAGTGTGATTCATGCATTGCAAACACAACCTGCTGTGGCAGCAGTTATAAGCAGGGAAATGCCAGTTGAATTGTTGCGTGCCAGCCTTCCTCACACAAATGAGTATCAGCGGAAACAGTTGCTCAGTTTTGCTCAGCGCACGGTGCCTGTTAACAACCATAGTTCTCATGGGTCCAATAATGGACCTATGACATCAGAATCTATCCCAAGTTCAGAAAGCCGGAAAATATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA006653