BGIOSGA022821

From RiceWiki
Revision as of 16:43, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA022821

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA022821, complete gene.

LocusTag

OJ1230_H04.20

Ensembl Transcript ID

BGIOSGA022821-TA

Ensembl Protein ID

BGIOSGA022821-PA

Length

1928

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:13759977..13761904

Sequence Coding Region

13759977..13760051,13760370..13760756,13761158..13761424,13761533..13761904

Genome Context

<gbrowseImage1> name=IndicaChromosome06:13759977..13761904 source=RiceIndica06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome06:13759977..13761904 source=RiceIndica06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCATCCAAACAGATGGTACATATGAATCGAGGCCAAGGGGAAACAAGCTATGCTCGAAACTCCATTCTTCAGAACGCTGAACAGAACAGGATGAGGCCGCTGATAGAAGACGCCATCGCCGACCTCGTATGCAGCAGAAGCATGGTGATCGCCGACCTGGGCTGCTCATCCGGCCCGAACGCGCTCGCGCTCGCGTCGATCGCCGTCGACGCCTTCCGCCGCCGGTGCCTCGCGCTCCGGCGGCCACCGCCACCGGCGGAGCTCTGCGTACTCCTCAACGATCTCCCCGACAACGACTTCGCCACGGTGGTGAAGAGCCTCGTGGAGTTCAGGCGAAACAACGGCGACGAGCCTGTCCTCCTGACCGGCGTCGTGCCTGGCTCCTTCTACGGGAGGCTCTTCGCCGCTGAATCCCTGCATCTCGTCTGCTCGTCCAACAGCCTCCACTGGCTCTCCGAGGCTCCTGAAGATCTGAAGATGAACGGAATTCCGGCATACGACGTTGACGCGAACGTGAGGAGAGAGAGACGAGCCGTGGTCGTTGGGGCTTATGCACGGCAGTTCAGGAAGGATTTCATGGCGTTTCTGAAGATGAGGGCTGTAGAACTGGTCCCAGGAGGCCGAATGGTACTCTCACTTGCAGGCAGGCGATCTGTTGATCTCGCCTCCGAACTCACGCACGCATGGGAATCCACAGCCATGACCCTAAGTGACATGGTCACTATGGGTGTGATTGACAAAGAAAAGTTTGAAACATTCTACATGCCGATTTACGGACCTTCCGATGAAGAGATCAGACAGATCATCCAAGAAGAAGGGTCCTTCTTGATACGGGAGATGCAGGTACCTGAACTCACGAGTGGTGCGTACAGCGCGCTGATCACCTCGGCAAGGGTAGCAAGTATGCTGAGAGCCGCATTCGAGCCCATAATTGTTCAGCATTTTGGACCGACCGGATGCGATGGAGAAGAAGGGATCATGGATGAGTTCGTGAGGACGGCGGAGCGTCGGTGGAGCTTGGAGGGCAGCTTGCAAGACGAGCTTGCACAAAACCCTCGAGGCGTTCTGCTTGTGTCCCTCGAGAAGAAGCCGTCATGA</cdnaseq>

Protein Sequence

<aaseq>MASKQMVHMNRGQGETSYARNSILQNAEQNRMRPLIEDAIADLVCSRSMVIADLGCSSGPNALALASIAVDAFRRRCLALRRPPPPAELCVLLNDLPDNDFATVVKSLVEFRRNNGDEPVLLTGVVPGSFYGRLFAAESLHLVCSSNSLHWLSEAPEDLKMNGIPAYDVDANVRRERRAVVVGAYARQFRKDFMAFLKMRAVELVPGGRMVLSLAGRRSVDLASELTHAWESTAMTLSDMVTMGVIDKEKFETFYMPIYGPSDEEIRQIIQEEGSFLIREMQVPELTSGAYSALITSARVASMLRAAFEPIIVQHFGPTGCDGEEGIMDEFVRTAERRWSLEGSLQDELAQNPRGVLLVSLEKKPS</aaseq>

Gene Sequence

<dnaseqindica>1..75#394..780#1182..1448#1557..1928#ATGGCATCCAAACAGATGGTACATATGAATCGAGGCCAAGGGGAAACAAGCTATGCTCGAAACTCCATTCTTCAGGTCGTTTCTCTGCTCTTAATTAGTTAATCTACAATTTTTTTAGTTAATCAACAATTGCCTATGATCTTTTCTGCTTAGAGGAAGAATGTAATTATTATTTTTTTTATAGAGAGAAAAAATGAAAATCAACTGAACATATATAAGTCAGACTTTTCGATAAAGTAAAAGAAGTTTGCAAAATGTCTTCAAATTTGCTCAAAATACAAATGTTCTCGGACCGATATATTCCGAAATTTTCTTAATTTCGGGTTTATAGTCACCCCCGAAATTTTTTGGCTTTCAGAAAAGCTGTTAATCCCGAGTAAAACGCACCTGCAGAACGCTGAACAGAACAGGATGAGGCCGCTGATAGAAGACGCCATCGCCGACCTCGTATGCAGCAGAAGCATGGTGATCGCCGACCTGGGCTGCTCATCCGGCCCGAACGCGCTCGCGCTCGCGTCGATCGCCGTCGACGCCTTCCGCCGCCGGTGCCTCGCGCTCCGGCGGCCACCGCCACCGGCGGAGCTCTGCGTACTCCTCAACGATCTCCCCGACAACGACTTCGCCACGGTGGTGAAGAGCCTCGTGGAGTTCAGGCGAAACAACGGCGACGAGCCTGTCCTCCTGACCGGCGTCGTGCCTGGCTCCTTCTACGGGAGGCTCTTCGCCGCTGAATCCCTGCATCTCGTCTGCTCGTCCAACAGCCTCCACTGGCTCTCCGAGGTCAGAAATCCTAAGATTTTTTTTCTTCTATAGTAAAAGTAACCTTTTTAAGACTTATTTTGAGCATATGAACCTTCTAACCATACTAACAGAGGCAAAACAACATTGTCACGCTAGTTTGTCTGGCATGACAGCGTTGTTTTACCACACACCATGACTGTCGTGATAGAACAAAACTATCACGCTCGATATGGGTGATGCAGACATTGTTATTTGTCACGTCAAGTGGATTAGCGTAATTAAAAGGTTCAGAATTTGAAATAAGTTTTATAAAAGTTTATTTTTAAATAAAAAGTTTAGAAAATAATAAAAATTTGAATCATACAGTACTGATCACCAGCATGCATTCTGAATTTATTATTCTTTGAGGCGAAAATTTTGTTTCAATTTCATGGCAGCAGGCTCCTGAAGATCTGAAGATGAACGGAATTCCGGCATACGACGTTGACGCGAACGTGAGGAGAGAGAGACGAGCCGTGGTCGTTGGGGCTTATGCACGGCAGTTCAGGAAGGATTTCATGGCGTTTCTGAAGATGAGGGCTGTAGAACTGGTCCCAGGAGGCCGAATGGTACTCTCACTTGCAGGCAGGCGATCTGTTGATCTCGCCTCCGAACTCACGCACGCATGGGAATCCACAGCCATGACCCTAAGTGACATGGTCACTATGGTAAATTTAACTGTTTTACCTTGCTAGAACTTCACCATTTGCTAACGAACAAATGATTAGTACTATCTATGGCATCCTGAGAAGCTGAGATTTTGGAGTAATTGACAGGGTGTGATTGACAAAGAAAAGTTTGAAACATTCTACATGCCGATTTACGGACCTTCCGATGAAGAGATCAGACAGATCATCCAAGAAGAAGGGTCCTTCTTGATACGGGAGATGCAGGTACCTGAACTCACGAGTGGTGCGTACAGCGCGCTGATCACCTCGGCAAGGGTAGCAAGTATGCTGAGAGCCGCATTCGAGCCCATAATTGTTCAGCATTTTGGACCGACCGGATGCGATGGAGAAGAAGGGATCATGGATGAGTTCGTGAGGACGGCGGAGCGTCGGTGGAGCTTGGAGGGCAGCTTGCAAGACGAGCTTGCACAAAACCCTCGAGGCGTTCTGCTTGTGTCCCTCGAGAAGAAGCCGTCATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA022821