BGIOSGA022618

From RiceWiki
Revision as of 16:42, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA022618

Description

BGIOSGA022618

Definition

Oryza sativa Indica Group BGIOSGA022618, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA022618-TA

Ensembl Protein ID

BGIOSGA022618-PA

Length

6235

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:8581643..8587877

Sequence Coding Region

8581643..8581796,8581883..8581972,8582326..8582528,8583100..8583278,8583739..8583817
,8584229..8584363,8584477..8584626,8584713..8584823,8584910..8585830
,8586176..8586448,8586678..8586887,8587250..8587398,8587541..8587877

Genome Context

<gbrowseImage1> name=IndicaChromosome06:8581643..8587877 source=RiceIndica06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome06:8581643..8587877 source=RiceIndica06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAGGCGGCCGCACTCCTATCCCCCACCGCCACCTCTCGCTCCCCTCTCCCCCTCCTCTCCACCGCGCCCGCCGCCCACCGCCTCCACGTTCTCCTGCCTCTCTCCGGCCGCCGCCGCCGCCTGTGCCTCCGCTCCTCTCCTCGACCCCGCGGGTCGTTGGGCTGTGCGGGAGATTGCGTCGTGAGGAGTATGGGTTCGTCTCGTGAGCGCGGGGTGCTCGTGAAGACCAGCAGCTCATCAGCCTCAGTCGAATCGGCAACCCAGGAGGTGGGCGCAGCGAGTTCGGGGGAGTGGAGCGGGGACGCCATACGCCGACGTTTCCTTGATTTCTATGCTGCCCGTGGCCACAAGATCCTTCCTAGCTCGTCGCTTGTGCCAGATGACCCCACCGTGTTCCTCACTATCGCCGGGATGCTTCAGTTCAAGCCTATATTCCTTGGCAAGGAACCTAGGCGTGTACCGTGTGCTACTACCTCCCAGAAATGCATACGGACAAATGACATTGAAAATGTGGGGCGTACGAGCCGGCATCAAACCTTCTTTGAGATGCTTGGGAACTTCAGCTTTGGTGATTACTTCAAGAAGGAAGCAATCACATGGGCATGGGAGCTAACAACCAAGGAGTTTGGGTTACCCCCAGAAAGACTATGGATTAGTGTATTTCAAGATGATGATGAAGCATTTTCCATTTGGCACAATGAGGTTGGAGTACCAAAGGAGCGAATAAAGAGATTGGGCGAGGATGATAACTTTTGGACTAGTGGTGCAACTGGACCCTGTGGCCCATGTTCTGAAATTTACTATGATTTCTATCCTGAGAGAGGATCCTCAGATGCGGATTTGGGTGATGATAGTCGATTCATCGAATTCTACAATCTTGTCTTCATGCAATACAACAAAAAGGATGACGGATCTCTTGAACCATTGAAACAAAAGAACATTGATACAGGGATGGGCCTTGAGCGTATGGCACGTATTCTTCAAAAGGTTCCAAACAACTATGAGACAGACTTGATTTTCCCAATTATTGAAAAGGCAGCAAGCATGGCATTAGTGTCGTACACCACAGCTGATGATGCTATGAAGACAAATCTTAAAATAATTGGGGATCACATGAGAGCAGTTGTTTATCTCATATCAGATGGAGTCATTCCCTCAAATATTGGGAGAGGATATGTTGTCCGAAGGCTTATAAGAAGAGTAGTTCGAACTGGTAGACTGATAGGTATAAGAGGTGATGGGCATGGAAATTCAGAAGGTGCCTTTTTACCTTCACTAGCTGAGGTAGCAATCAGTCTTAGCACTGAGATAGATCCGGATGTTGAATCTAGAAGGAAATCAATTCTTGGAGAACTTCAAAGGGAAGAACTGCGATTTGTGCAGACTTTGGAAAGAGGTGAAAAATTATTGGACGAACTTCTGGATGAGGCATTATCAAGTGCTGGTAATAATGGTGGTAAACCTTGTCTATCTGGAAAAGATGTTTTCCTTTTGTATGATACATATGGTTTTCCAGTAGAGATTACAGCTGAAATAGCAGGTGAACGAGGTGTAATTGTTGACATGAAGGGATTTGATATGGAAATGGAAAACCAAAGGAAACAATCTCAGGCTGCTCATAATGTAGTTAAACTTTCTGTAGGAAATGAGACTGAGATTGTCAAGAGTATCCCCGATACTGAATTTCTGGGGTACGACTCTCTTTCTGCCACTGCTGTTGTTAAAGGTCTTTTAGTTAATGGAAACTCAGTGAATGTAGTTTCAGAAGGTTCTGATGTAGAAATATTTTTAGATCGGACACCATTTTATGCTGAATCAGGTGGTCAAGTGGGAGATAATGGTTTCTTGTATGTCTATGGAGAAGAAGATGCAAAACAGAAGGCAGTCATAGAAATCAATGACGTCCAAAAATCCCTGGGGAATATCTTTGTTCACAAAGGCACAATTAAACAGGGGTCCGTAGAAGTTGGGAAGGAAATCGATGCTGCTGTTGATGCAAAATTGAGGCAGGGGGCTAAGGCCCATCATACTGCAACACATCTCCTACAATCTGCTCTTAAAAGTATCATTGGTTCAGAAACATCACAGGCAGGATCCCTTGTGGCATTTGACCGTCTCCGATTTGACTTCAATTTCCACCGCCCCCTTTCTGAAGAGGAATTGATGAAAATTGAATCACTTGTAAACCAATGGGTTAGCAGTGCTACTCATCTTGAGACAAAAGTGATGGATCTGCAAGATGCAAAAAATGCTGGTGCAATTGCAATGTTTGGAGAGAAATATGGCGAGCAGGTCAGAGTTGTAGAGGTCCCTGGGGTGTCTATGGAACTCTGTGGTGGAACTCATGTGAGTAACACCGCTGAGATCCGTGGTTTCAAGATTATCTCAGAGCAGGGAATAGCTTCTGGAGTCAGAAGGATTGAGGCTGTTGCAGGTGATGCATTTGTTGAGTATGTTTGTGCCCGTGACAACTATATGCGGTGCTTGTGCTCATCCCTTAAGGTCAAGGCTGAAGATGTGAATGGCAGAGTAGAAACAATTCTTGAAGAGCTAAGAACAACCAGAAACGAAGTATCATCTCTACGCAGCAAAATCGCGGTGCTCAAAGCAGCATCCCTCGCAAATAAAGCTACAACTATCGATAACACGAGGGTCGTGGTTGAGAACATGGGTGATGTGGACGCCGATGGTCTGAAGAGCGCCGCGGAGTATCTCGTGGACACCCTTGAAGACCCTGCCGCGGTGATCTTAGGCTCAAGCCCGGGCGATGGCAAGGTCAGCTTGGTTGCGGCCTTCAGCCCCGGCGTCGTCAAGATGGGTATCCAGGCAGGGAAGTTCGTCGGCGGCATAGCCAAACTCTGCGGCGGAGGCGGCGGCGGCAAGCCCAATTTTGCCCAAGCCGGTGGACGGAAGCCGGAGAACTTGCCGGGTGCGCTCGAGAAGGCACGGGATGAAATTGTTGCTGCTATATCGTCGAAGTCGAGCTGA</cdnaseq>

Protein Sequence

<aaseq>MEAAALLSPTATSRSPLPLLSTAPAAHRLHVLLPLSGRRRRLCLRSSPRPRGSLGCAGDCVVRSMGSSRERGVLVKTSSSSASVESATQEVGAASSGEWSGDAIRRRFLDFYAARGHKILPSSSLVPDDPTVFLTIAGMLQFKPIFLGKEPRRVPCATTSQKCIRTNDIENVGRTSRHQTFFEMLGNFSFGDYFKKEAITWAWELTTKEFGLPPERLWISVFQDDDEAFSIWHNEVGVPKERIKRLGEDDNFWTSGATGPCGPCSEIYYDFYPERGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPNNYETDLIFPIIEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGYVVRRLIRRVVRTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEIDPDVESRRKSILGELQREELRFVQTLERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITAEIAGERGVIVDMKGFDMEMENQRKQSQAAHNVVKLSVGNETEIVKSIPDTEFLGYDSLSATAVVKGLLVNGNSVNVVSEGSDVEIFLDRTPFYAESGGQVGDNGFLYVYGEEDAKQKAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEIDAAVDAKLRQGAKAHHTATHLLQSALKSIIGSETSQAGSLVAFDRLRFDFNFHRPLSEEELMKIESLVNQWVSSATHLETKVMDLQDAKNAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCARDNYMRCLCSSLKVKAEDVNGRVETILEELRTTRNEVSSLRSKIAVLKAASLANKATTIDNTRVVVENMGDVDADGLKSAAEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGVVKMGIQAGKFVGGIAKLCGGGGGGKPNFAQAGGRKPENLPGALEKARDEIVAAISSKSS</aaseq>

Gene Sequence

<dnaseqindica>1..154#241..330#684..886#1458..1636#2097..2175#2587..2721#2835..2984#3071..3181#3268..4188#4534..4806#5036..5245#5608..5756#5899..6235#ATGGAGGCGGCCGCACTCCTATCCCCCACCGCCACCTCTCGCTCCCCTCTCCCCCTCCTCTCCACCGCGCCCGCCGCCCACCGCCTCCACGTTCTCCTGCCTCTCTCCGGCCGCCGCCGCCGCCTGTGCCTCCGCTCCTCTCCTCGACCCCGCGGTAACTCACTCCTCACTGCTGTTCGAATCCGCGGACCGCGGGCTTCTGAGGCGGTGCAGAATTTGATGCGTGATGCTGCGCTGCAGGGTCGTTGGGCTGTGCGGGAGATTGCGTCGTGAGGAGTATGGGTTCGTCTCGTGAGCGCGGGGTGCTCGTGAAGACCAGCAGCTCATCAGGTTTAGTAATTTATAATCCCTTTAGTCTGATTGATGATTAGTACTTCTTCCGTTTTATATTATAACTCGTTTGACTTTTTTCCTAGTCAAATTTCTTCAAATTTGACCGGATTTATAGAAAAATATATTACTATTTTCAACACAAGAAACATATTATCAAAATATATGCAATGTGAGATTTAATGAAACTAATTTGATATTTTAAATGTTGCTAGCTTTTTCTATAAAATTAGTACTTAATAGTAAAAAAGTCAAACGACTTTTAATATGAAACGGATGGATGGAGTAGTAAGTTTCTGCTTGGTATGTATGGTTCGGTTTGTAATTGTGGTGAAATTGAATGTAATCCACAGCCTCAGTCGAATCGGCAACCCAGGAGGTGGGCGCAGCGAGTTCGGGGGAGTGGAGCGGGGACGCCATACGCCGACGTTTCCTTGATTTCTATGCTGCCCGTGGCCACAAGATCCTTCCTAGCTCGTCGCTTGTGCCAGATGACCCCACCGTGTTCCTCACTATCGCCGGGATGCTTCAGTTCAAGCCTATATTCCTTGGCAAGGTGATTCTCATAAGATACATATTGCATTCAGTAGTGCAAACTGCACATTTTTGAAAAGTGACCCGTAAGGTCATCACTAAGCGTTTTTAATAAGAACATTGGGGAAAAAAGGGGATCATTGCACACATTGAGCTAGCATTTACAAGACGTTGAAGTGCACATGAGTTTTCCACTTGCGGGAAGCAAAAGCTACGCAAGTGACAAGTCTTGTGGCATGATCTTTGCACGATCTCAGAATCAGAAACAAATTTGCGAAATGACAACAGTAAGAGGGGCTAATAGTACGTAGCAAGTGAATTAACATGGGTGTCTATATGTACTAATGTGAATACTAACTTTAATATTTCAGTTAATAAGTGAAGTTCTTTAGTTGTCCAATGTTCATTGGTAATCTTGATGCTTATGTGGAAGAATCCGTTATCGAATATAATCGTTGGCTCGATAATGGTAGTAAATAGTAACACAATGAGTATTGCTTTGTTCTTTATAGATCATGTCACAGCAAACTATGTTGCAACATGCATCTGTTTCTTGTAACTTCGTTCTGAAGTCCTTATATTGCTATTCCTAGGAACCTAGGCGTGTACCGTGTGCTACTACCTCCCAGAAATGCATACGGACAAATGACATTGAAAATGTGGGGCGTACGAGCCGGCATCAAACCTTCTTTGAGATGCTTGGGAACTTCAGCTTTGGTGATTACTTCAAGAAGGAAGCAATCACATGGGCATGGGAGCTAACAACCAAGGAGTATGAACAATTTCCTTACTCCCTATGGAGCATGATCTCTGTATTGGTAAATCTTAAGCTGTTCATCTGAAAAGTTTGCCATGTCACCATGAATATTACATTCATGCACACATGCCTCTAAGTCCACTCTCAAGAAAAAAAGGGGGAAAAACTTCCGGACATTTAGGGTTGTTCAAATGCTTATGTCGATCCCCAGAGTATTGAACAGCTCTTCTTTCATCTGAAATTTTATACTTTGTTTGTACCCATTAATGCTATTAAAAATTTAGATTATTTGAGGATTATCAGTATTCCTGCAATTGTCTTTGATTTCTTTGTCAATGCTAATGACTTGCATATTGACTTTATCTTTCCAACCATCAGCATGCTGTTTTAGTGTATACTACTTTACTAGGCTTGATATTCTTGCATGCTTTTGTTGCTTTAATTCTGCAGCTTTCATTTTTTGTTATTTATTTAGGTTTGGGTTACCCCCAGAAAGACTATGGATTAGTGTATTTCAAGATGATGATGAAGCATTTTCCATTTGGCACAATGAGGTCAGTTATCAAAAACCTGCATGTTTCTGCAATCTTGAAGAGCTTTGTTTATTTTTGGTTTACACAACAATGGAACATTTATTACATTTTAGCTGCATCTCAGAGTTACTCTTCATGGTTAGCTAGACCATACAATATGCTTACTCACTAGCAAAATAATTATGGTCAAGAAAAACTTATTTCTTTAATAACTTATTAATAGTAAAAGTATATAGATCTGATGTTATTGTACATCAGTTATTTACAGTGTCAAAATATGCTTATTCTGTTCAAGAGGTGATGGGATTGTATATGGAAATATATTGACTGACACATAAACACATTGTCTTAAAATAATGTTCTGTGCCTGACTAAGTACTTCATAAGCTTGTAGTATGGGTGAGTGATTTTATATCTATTTATTTTATCAAGGTTGGAGTACCAAAGGAGCGAATAAAGAGATTGGGCGAGGATGATAACTTTTGGACTAGTGGTGCAACTGGACCCTGTGGCCCATGTTCTGAAATTTACTATGATTTCTATCCTGAGAGAGGATCCTCAGATGCGGTATGTAAAGACTGTGGTATTACTAGTTAAGAAATTCAAAGCGCCTTTTCCATTGTGTATGCAAGATATTCACCATTAACTGAAACTAGTGATATACATATAGTTGTATGCAGGATTTGGGTGATGATAGTCGATTCATCGAATTCTACAATCTTGTCTTCATGCAATACAACAAAAAGGATGACGGATCTCTTGAACCATTGAAACAAAAGAACATTGATACAGGGATGGGCCTTGAGCGTATGGCACGTATTCTTCAAAAGGTATTGCCTACCATCTATTTCTTAAAACAAATGAATGTCATCCTTACTAGGTTTAAGCTACTCTCTTACTCAATTGTCTATCATAGGTTCCAAACAACTATGAGACAGACTTGATTTTCCCAATTATTGAAAAGGCAGCAAGCATGGCATTAGTGTCGTACACCACAGCTGATGATGCTATGAAGACAAATCTTAAAGTATGCTATTCAGGACCTTTTACTAGTTTCATCATAAATAAGGAGGTTACCCATAACCTTTGCTCTTTCTTTTTCTGTTATTCCAGATAATTGGGGATCACATGAGAGCAGTTGTTTATCTCATATCAGATGGAGTCATTCCCTCAAATATTGGGAGAGGATATGTTGTCCGAAGGCTTATAAGAAGAGTAGTTCGAACTGGTAGACTGATAGGTATAAGAGGTGATGGGCATGGAAATTCAGAAGGTGCCTTTTTACCTTCACTAGCTGAGGTAGCAATCAGTCTTAGCACTGAGATAGATCCGGATGTTGAATCTAGAAGGAAATCAATTCTTGGAGAACTTCAAAGGGAAGAACTGCGATTTGTGCAGACTTTGGAAAGAGGTGAAAAATTATTGGACGAACTTCTGGATGAGGCATTATCAAGTGCTGGTAATAATGGTGGTAAACCTTGTCTATCTGGAAAAGATGTTTTCCTTTTGTATGATACATATGGTTTTCCAGTAGAGATTACAGCTGAAATAGCAGGTGAACGAGGTGTAATTGTTGACATGAAGGGATTTGATATGGAAATGGAAAACCAAAGGAAACAATCTCAGGCTGCTCATAATGTAGTTAAACTTTCTGTAGGAAATGAGACTGAGATTGTCAAGAGTATCCCCGATACTGAATTTCTGGGGTACGACTCTCTTTCTGCCACTGCTGTTGTTAAAGGTCTTTTAGTTAATGGAAACTCAGTGAATGTAGTTTCAGAAGGTTCTGATGTAGAAATATTTTTAGATCGGACACCATTTTATGCTGAATCAGGTGGTCAAGTGGGAGATAATGGTTTCTTGTATGTCTATGGAGAAGAAGATGCAAAACAGAAGGCAGTCATAGAAATCAATGACGTCCAAAAATCCCTGGGGAATATCTTTGTTCACAAAGGCACAATTAAACAGGGGTCCGTAGAAGTTGGGAAGGAAATCGATGCTGCTGTTGATGCAAAATTGAGGCAGGGGGCTAAGGTATGAAATTGTGGAGGCATCGGATTGTTTTTTCTGGTTGACATTTTTTTTTTGTTTTCAAGATTCAATGATAATTTGTTTTATTTGGATTCACATTAACTTAGCTTATGTATTTATTTACCTGACGAGGTTTCTCGAGATTCTGAAAAATCTATCTGATCAGACTACTTTAAAGAGCAAAATAGGAACATTTGCAATAGCTAATTTCTTGTGTTCCATGACTAATTACAGCTTAGATTGTTGGCATTTGAAACATGCAAATGTGGTTAGAATATAGGTTCATAGGCTTTATTGCTTCCATTATCTTGGTTCTTACTTTCATATGCTATCTTTGTTTTGTACTAGGCCCATCATACTGCAACACATCTCCTACAATCTGCTCTTAAAAGTATCATTGGTTCAGAAACATCACAGGCAGGATCCCTTGTGGCATTTGACCGTCTCCGATTTGACTTCAATTTCCACCGCCCCCTTTCTGAAGAGGAATTGATGAAAATTGAATCACTTGTAAACCAATGGGTTAGCAGTGCTACTCATCTTGAGACAAAAGTGATGGATCTGCAAGATGCAAAAAATGCTGGTGCAATTGCAATGTTTGGAGAGAAATATGGCGAGCAGGTTAGTCTGTATATATAGATGTTTTTTTCTTCAAAAATAGTTAGTGCCCTGGCCTCTGGAAATTAGTATGTTGCAGTGACATGCCTGAGTAGGGAAGTGCCAAGTCATGAAAGTTTGTGCAGATGAAATTCCGAACTTGAAGGAGCATAGAACAATGAAAATGCATGTTATACCATAGTAGCATAGCCAATAGTTTAACCTCAATAAGACTTTTTTTTTGTTCTGATAGGTCAGAGTTGTAGAGGTCCCTGGGGTGTCTATGGAACTCTGTGGTGGAACTCATGTGAGTAACACCGCTGAGATCCGTGGTTTCAAGATTATCTCAGAGCAGGGAATAGCTTCTGGAGTCAGAAGGATTGAGGCTGTTGCAGGTGATGCATTTGTTGAGTATGTTTGTGCCCGTGACAACTATATGCGGTGCTTGTGCTCATCCCTTAAGGTATGATGGTGCTCATGCTGTTGCCCTTCTGATTTGTCTTGTGTTTGTTTGTAAGTTTGGTTGCTATACTTTGTGAATCTATGATCGTTTACTTCTTTGCCCCATGTTCAAATAGACAAACATGCATGCTTCTAACTACTGCTAATCATAGGCACATGTGTTCAGATACAGCATGTTGGCAACAAATTTTACTCTGTAACTTGATTATAGACATCATGTTAATCACAAGCAAAATGCCAACAGCATGCTCATCCTGTCATCCATGCCTAGGATGATCAATTCTTGCAACAACAAACTATGCTGATTATGTCTTCCATTTGTGTTTTTCAATTGATGTCCATCTACTCAAAATAACTTTGCAGGTCAAGGCTGAAGATGTGAATGGCAGAGTAGAAACAATTCTTGAAGAGCTAAGAACAACCAGAAACGAAGTATCATCTCTACGCAGCAAAATCGCGGTGCTCAAAGCAGCATCCCTCGCAAATAAAGCTACAACTATCGATAACACGAGGTATGACGCCTCCGCTTTCGCCATTTTCACATCCAGTCTTCATGATCATCACTTGCTAGTTGCTACTAGAAAACCAATAACATTTGGCAGTTGACAATTTGACATAAGCAACAAATCCATCCCAAAAATCTGTGCTCTGCAGGGTCGTGGTTGAGAACATGGGTGATGTGGACGCCGATGGTCTGAAGAGCGCCGCGGAGTATCTCGTGGACACCCTTGAAGACCCTGCCGCGGTGATCTTAGGCTCAAGCCCGGGCGATGGCAAGGTCAGCTTGGTTGCGGCCTTCAGCCCCGGCGTCGTCAAGATGGGTATCCAGGCAGGGAAGTTCGTCGGCGGCATAGCCAAACTCTGCGGCGGAGGCGGCGGCGGCAAGCCCAATTTTGCCCAAGCCGGTGGACGGAAGCCGGAGAACTTGCCGGGTGCGCTCGAGAAGGCACGGGATGAAATTGTTGCTGCTATATCGTCGAAGTCGAGCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA022618