BGIOSGA030589

From RiceWiki
Revision as of 17:24, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA030589

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA030589, complete gene.

LocusTag

OsI_31047

Ensembl Transcript ID

BGIOSGA030589-TA

Ensembl Protein ID

BGIOSGA030589-PA

Length

5170

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:10191002..10196171

Sequence Coding Region

10191002..10191040,10191167..10191551,10191900..10192037,10192551..10192718,10192976..10193100
,10193194..10193352,10193458..10193620,10193774..10193842,10193905..10193988
,10194066..10194718,10194814..10194905,10195017..10195101,10195264..10195392
,10195484..10195589,10195709..10195797,10195872..10196171

Genome Context

<gbrowseImage1> name=IndicaChromosome09:10191002..10196171 source=RiceIndica09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome09:10191002..10196171 source=RiceIndica09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCCTGCACGGTTCTTATGGTTTAATCATGCTGCTCTGAGGCGGAACCTGAAGACGAACGTCGGCATCACCGTCTTCCCGATCCTCATCTGCGTGCTGCTCGTCGTGCTTCAGAACGTGATCAACGGGGAGCTCGACAAGCCCAAGTACCAGTGCGGCTGCGAATGCACCGAGAGTGACCTGGAGGGGACCTGCCTGCGGAAGGAGTGCGGCATCCAGCACTCGACGCTGGAGCAGGTATGGAGCTGCGAGGTGCCCAGCCCACCACGGTGGCCGGCCCTGATTCAGGTCCCCTGGCCAGGGTTCCGGGCTGTCGGAACCGCATCGCAGCCGTTCGACGATTTGCCTAACCCATTGTGCCGTGGCGACGGGTCTTGCCCTGTCACTCTCCTCGTCACTGGAGAGAACCAAACATTAGCTGAGCACACACAGCCATGGTATACCCAATTGCTAGAGCCCGCTTTTTCCTCTGGTAAAACTTTGCATCTTCTCCAGCCTCGTTGCATGCCCTTCATGTTTGGGACCATTCCATACAATGCAGGGGGCGTACCCTTACATATCGACTCCTTCGTAGGGCTGCCTAGATTGTATTCTGATGTCCTGTTGAATGAACCAGATATACAGTGTATTGAAGTTCAGATGTTGTGGCGTGAAAGTGCATCAGTTATCAACTATGAACTGTTTAAGGGTTACGTACAAAGAGGAGGAGAAACAAATGAGTTTGTTGCAGGTTATGACTTCTTGAACACGACAGGATATGACCTCAATATAAATGTTTGGTACAACTCTACTTATAATGATAACCCTGCATATTCATTTATCGCAGCATTACGAGTTCCACGATTGGTGAATGCAATATGTAATGCATACCTAAAATTTATCAGAGGAAGTGGGGTGGATATGCTGCTTGAATATGTAAAAGAGATGCCCAAAGTTGGAACAAGGTTTAGGCTTGATCTCTCTTCTCTTCTCAGTGTGCTATTCTTCACATGGATAGTTGAACTACTTTTCCCAGTTATGTTGACATATCTGGTGTATGAGAAGGAACAAAAGCTAAAAATTATGATGAAGATGCATGGTCTGAAGGATGGGCCTTACTGGCTAATTTCTTATGCTTATTTCTTTGCTCTATCGGTTATCTATATGACATTTTTTGTGATTTTTGGCTCCTTAATTGATTGCACTGCATTTTTTGTGCATCTTTCTTTTCATCTGTCAGACAGCCACTGGTTAGTGATTCAACCTTTGATTGGATACATTTATGTATTTGGCTCTGGCTTGCTAGGGGCATTTCTTTTTCGTTTCTTTGTTGAGGACAGGACCTTTCCCAATGGTTGGTTGTTAGTAATGGAGATTGTCCCAGGATTTTCCCTCTATCGAGGACTATATGAACTTGGCCAATATGCTTTCTCTGGAAGTGCTATGGGAGCCTCTGGCATGACATGGGGAAATTTGAGAGACCCAATCAATGGAATGTGTGGTATATTTATCATCATGACAGTAGAATGGGCATTTCTCCTTATGTTAGCATTCTATTTGGATCAAGTCTCTCCAGTAGGTGGTGGTGTCAGGAAAAGGCCCTTATTCTTCTTCAGGTGTTTACAGAAGAAGCACACACCGTCATTGCAGAAGCCTAGCTTTGTGCAACAGGGTTCTAAAGTAATTGTCTATATGGAGAAGCCAGATGTTGCTCAAGAAGTAGGTTACCTGCTGTACTTTGCCATTCCAGATTTAATGGAGTACATATGTTCTAAATTTATTCATTATACAAATTCTATCCAGAGAGAAGTAGTTGAGCAACTTTTGGTAGGCCGCAATGCAAATCAAGCTATTATATGTCACAACCTCAAGAAGATCTATCCTGGAAGGGATGGAAACCCTGACAAGCTGGCGGTTCGAGGATTATCTCTTGCCGTACCAAAAGGGCAGTGCTTTGGAATGCTTGGCCCAAATGGAGCTGGGAAAACATCCTTCATTAGTATGATGATTGGGTTTGTTAACCTACATCTGGTACTTCCTATGTTCATGGAATGGATATCAATATGGATATGGATCACATATATACAAACATGGGGCTTACTTTGGGAACCATTGACTGGAAAAGAACATCTGTTCTTTTATGGCAGGCTGAAGAATCTTAAAGGTGCTGCGTTGGTGAAGGCTGTTGAGGATGCTCTGAAGAGCGTAAATCTGTTCCATGGTGGTGTTGGTGATAAGCAAGTGGGAAAGTACAGCGGAGGCATGAAAAGAAGGCTCAGTGTGGCAATATCATTGATTGGAGACCCCAAAGTCGTTTTCATGGATGAACCAAGCACTGGGCTAGACCCCGCATCAAGAAATAACTTGTGGAATGTTGTGAAGGAGGCCAAGCGAAACCGTGCAATCGTTCTTACTACGCACTCGATGGAGGAGGCTGAAGTACTTTGTGATCGACTTGGCATCTTTGTCGATGGCGATTTCCAATGTCTTGGAAATCCTAAGGAGCTAAAGGCGAGATATGGGGGAGCATACATATTCACAATGACAACATCTCCAGAACAAGAACAAGAGGTTGAACAGCTAGTCCATGACTTGTCTCCGAGCGCAAACAAGATCTACCACCTATCTGGAACTCAAAAGTTCGAACTGCCAAAGCAAGAGGTGAAAATAGCCAAGGTATTTCGCGCAGTTGAGGATGCGAAGAAACGGTTCACCGTGCATGCCTGGGGCCTGGTTGATACCACCTTGGAGGATGTCTTCATAAAGGTTGCCAAGGGAGCACAGGCATCCAGTGATAATAGTTAG</cdnaseq>

Protein Sequence

<aaseq>MPARFLWFNHAALRRNLKTNVGITVFPILICVLLVVLQNVINGELDKPKYQCGCECTESDLEGTCLRKECGIQHSTLEQVWSCEVPSPPRWPALIQVPWPGFRAVGTASQPFDDLPNPLCRGDGSCPVTLLVTGENQTLAEHTQPWYTQLLEPAFSSGKTLHLLQPRCMPFMFGTIPYNAGGVPLHIDSFVGLPRLYSDVLLNEPDIQCIEVQMLWRESASVINYELFKGYVQRGGETNEFVAGYDFLNTTGYDLNINVWYNSTYNDNPAYSFIAALRVPRLVNAICNAYLKFIRGSGVDMLLEYVKEMPKVGTRFRLDLSSLLSVLFFTWIVELLFPVMLTYLVYEKEQKLKIMMKMHGLKDGPYWLISYAYFFALSVIYMTFFVIFGSLIDCTAFFVHLSFHLSDSHWLVIQPLIGYIYVFGSGLLGAFLFRFFVEDRTFPNGWLLVMEIVPGFSLYRGLYELGQYAFSGSAMGASGMTWGNLRDPINGMCGIFIIMTVEWAFLLMLAFYLDQVSPVGGGVRKRPLFFFRCLQKKHTPSLQKPSFVQQGSKVIVYMEKPDVAQEVGYLLYFAIPDLMEYICSKFIHYTNSIQREVVEQLLVGRNANQAIICHNLKKIYPGRDGNPDKLAVRGLSLAVPKGQCFGMLGPNGAGKTSFISMMIGFVNLHLVLPMFMEWISIWIWITYIQTWGLLWEPLTGKEHLFFYGRLKNLKGAALVKAVEDALKSVNLFHGGVGDKQVGKYSGGMKRRLSVAISLIGDPKVVFMDEPSTGLDPASRNNLWNVVKEAKRNRAIVLTTHSMEEAEVLCDRLGIFVDGDFQCLGNPKELKARYGGAYIFTMTTSPEQEQEVEQLVHDLSPSANKIYHLSGTQKFELPKQEVKIAKVFRAVEDAKKRFTVHAWGLVDTTLEDVFIKVAKGAQASSDNS</aaseq>

Gene Sequence

<dnaseqindica>1..39#166..550#899..1036#1550..1717#1975..2099#2193..2351#2457..2619#2773..2841#2904..2987#3065..3717#3813..3904#4016..4100#4263..4391#4483..4588#4708..4796#4871..5170#ATGCCTGCACGGTTCTTATGGTTTAATCATGCTGCTCTGGTTTGGGGCTTTTGGATGGATGATGGGCAGCCATCGATTTCATCTGTGTTCTTGGGAGGGTGGGAGGCATATGGTTGATGGTTTTGGTGGTGGCATCTGATTCTTGTCTCTTGGCTGCGGGTGCAGAGGCGGAACCTGAAGACGAACGTCGGCATCACCGTCTTCCCGATCCTCATCTGCGTGCTGCTCGTCGTGCTTCAGAACGTGATCAACGGGGAGCTCGACAAGCCCAAGTACCAGTGCGGCTGCGAATGCACCGAGAGTGACCTGGAGGGGACCTGCCTGCGGAAGGAGTGCGGCATCCAGCACTCGACGCTGGAGCAGGTATGGAGCTGCGAGGTGCCCAGCCCACCACGGTGGCCGGCCCTGATTCAGGTCCCCTGGCCAGGGTTCCGGGCTGTCGGAACCGCATCGCAGCCGTTCGACGATTTGCCTAACCCATTGTGCCGTGGCGACGGGTCTTGCCCTGTCACTCTCCTCGTCACTGGAGAGAACCAAACATTAGCTGAGCGTATGTGTCATATTTTCCATATTGCTGATCGATTGCTAAAATGAATACTTGAATTTTTCATATTTCAAAAAATTAGGTGAATGTGTTCATAGTTCTTGAGTACTTCCAATTGACAGGTGTTTCAGGTCGGGTGTTTCCTGCCCTTTATCCGTTGCCTAATGTGACAGACTACCTGATGCCTCCTCCCTTTTCTCCCTCTCAAGTGACAGACTATCTTGATATCCTCTCCAGAATAGTTGTTGTGAGTTCCTTCTATGGCTACATGAGTATACATCTTGTAGATCACGCATTTTTCTTGAAAAATAGCTTATGGAGTTATTGGTTGGACTGATTTGTCATAGGGTTCAGACACACAGCCATGGTATACCCAATTGCTAGAGCCCGCTTTTTCCTCTGGTAAAACTTTGCATCTTCTCCAGCCTCGTTGCATGCCCTTCATGTTTGGGACCATTCCATACAATGCAGGGGGCGTACCCTTACATATCGGTAAGTTAAAGCTTCCTTCTTTGCAATGTTGAATTTGTGACTTGTGTTGAAAAACTTAAGTTACTTTGCTAGTAAGTCAGGCTAGGGATGCAAATATGCAATTCAAAACTTTTCCTGTACAAATTCATTTGCATTTGAAGGGACTAAAAAATATTTTCCTGTTCTGTTATTCATTTTGCATGGTTTCTACTTTCAATACTTCCTCCGTTTCACAATGTAAGTCATTTTAGCATTTTCCACATTCATATTGATGCTAATGAATTTAGATAGGTATGTATGTCTAGATTCATTAGCATTAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACAATCAAACAGAAACAAGACAACTAGTTTTTTTAGATAATGGAATATAGTAGTTGTGTGGTGAGACTTGTACATGTCTAGTACGTTGTGTAGTGTAGCTTTTCCTAACTATTTATGCAGTCTGTTTGACAACAATAAATACAATATGTTCATCGTTCATTTAGACTCCTTCGTAGGGCTGCCTAGATTGTATTCTGATGTCCTGTTGAATGAACCAGATATACAGTGTATTGAAGTTCAGATGTTGTGGCGTGAAAGTGCATCAGTTATCAACTATGAACTGTTTAAGGGTTACGTACAAAGAGGAGGAGAAACAAATGAGTTTGTTGCAGGTTATATTTCTATCTCAATGTGACCATTTTGTGGTCAATTTGCAACCAGAATGAGTTTGTGTAACAGTGGTTTTTTTTCACATTTTGAATTTGAATACCTTCCAACAGACTGCTTTTGAATGCCACACATAGTACGGATAATTCCATGGCCCCATCTCCAAATAATTGCTTCAAAACATAACAAATGTAGTTCTTCGTATAAATGGTGGTGGTTATTTGCAATGATGTGTGCTGTATAGTTTAATTGTTCTCTGCAGGTTATGACTTCTTGAACACGACAGGATATGACCTCAATATAAATGTTTGGTACAACTCTACTTATAATGATAACCCTGCATATTCATTTATCGCAGCATTACGAGTTCCACGATTGGTGAATGCAGTATGTTTTCCTTTTCATAACTTCGTCCTGAGTAATTTCGGTGTATTACAGAACCATCTGACAATTCAGCAATTTATGCTTTGTTTCCTGCAGATATGTAATGCATACCTAAAATTTATCAGAGGAAGTGGGGTGGATATGCTGCTTGAATATGTAAAAGAGATGCCCAAAGTTGGAACAAGGTTTAGGCTTGATCTCTCTTCTCTTCTCAGTGTGCTATTCTTCACATGGATAGTTGAACTACTTTTCCCAGTGAGTATGATGTGATTTAACAAGTTCAGATGCAAAAGAAAAAGGGAGTGTTGAGTGTGTTATGGTCAGGATTTGTACAGCTTGCAAATTGACTCTCTTTTCCAGGTTATGTTGACATATCTGGTGTATGAGAAGGAACAAAAGCTAAAAATTATGATGAAGATGCATGGTCTGAAGGATGGGCCTTACTGGCTAATTTCTTATGCTTATTTCTTTGCTCTATCGGTTATCTATATGACATTTTTTGTGATTTTTGGCTCCTTAATTGGTAATTTTCTTCCAATCTATTTTCACGAAGGTGCTGTTCTGACAAACAAATCTAGATATTTCAATAGATTTTTTTTTTGTAGGTCTAAATTTCTTCAGACTCAATGAATACAGCATACAGTTTGCTTTCTTCTTCATTTATATAAATTTGCAGATTGCACTGCATTTTTTGTGCATCTTTCTTTTCATCTGTCAGACAGCCACTGGTTAGTGATTCAACCTTGTAAGTTATAAGTCCAAAATGTTTCTTACTGGAAGTCACAAATTACATATTTCCTCCTGCAGTGATTGGATACATTTATGTATTTGGCTCTGGCTTGCTAGGGGCATTTCTTTTTCGTTTCTTTGTTGAGGACAGGACCTTTCCCAGTAAGTTATTATATCAGTTGTATTTTTCAACTTAATTTACATAATATGGGTAACAAGCATTTTTGTTTTCTACTCAGATGGTTGGTTGTTAGTAATGGAGATTGTCCCAGGATTTTCCCTCTATCGAGGACTATATGAACTTGGCCAATATGCTTTCTCTGGAAGTGCTATGGGAGCCTCTGGCATGACATGGGGAAATTTGAGAGACCCAATCAATGGAATGTGTGGTATATTTATCATCATGACAGTAGAATGGGCATTTCTCCTTATGTTAGCATTCTATTTGGATCAAGTCTCTCCAGTAGGTGGTGGTGTCAGGAAAAGGCCCTTATTCTTCTTCAGGTGTTTACAGAAGAAGCACACACCGTCATTGCAGAAGCCTAGCTTTGTGCAACAGGGTTCTAAAGTAATTGTCTATATGGAGAAGCCAGATGTTGCTCAAGAAGTAGGTTACCTGCTGTACTTTGCCATTCCAGATTTAATGGAGTACATATGTTCTAAATTTATTCATTATACAAATTCTATCCAGAGAGAAGTAGTTGAGCAACTTTTGGTAGGCCGCAATGCAAATCAAGCTATTATATGTCACAACCTCAAGAAGATCTATCCTGGAAGGGATGGAAACCCTGACAAGCTGGCGGTTCGAGGATTATCTCTTGCCGTACCAAAAGGGCAGTGCTTTGGAATGCTTGGCCCAAATGGAGCTGGGAAAACATCCTTCATTAGTATGGTATAGTACTAAAATGGCACGTGGTACCATTTTTTGTGAAAATTGCTTAGTTATGGCAGCTCACCTTTATTAACCTTGTTTTGTTATTTTACCAGATGATTGGGTTTGTTAACCTACATCTGGTACTTCCTATGTTCATGGAATGGATATCAATATGGATATGGATCACATATATACAAACATGGGGGTGTGCCCACAGCATGAGTATTTGCTACAACTAGCACTTATCTGACCAAAAAGAATCTTTCCCAGACCAGATTATTTTTTTTATAGTAATACGTTTTAATCTGAAATGCAGCTTACTTTGGGAACCATTGACTGGAAAAGAACATCTGTTCTTTTATGGCAGGCTGAAGAATCTTAAAGGTGCTGCGTTGGTGAAGGTACCTCTACTCTGCCTCACTTATTTTTAAATTTAATATCCACATTTCATTGTTGACCATATGAAGTTGTTTTGTCACGTATTTCATAAACTATACTGCTCAGCTATCTCAGCATATGTACATCTTGTATTTGAACCATGTCTGGGATTTTTCCACTGTTAGGCTGTTGAGGATGCTCTGAAGAGCGTAAATCTGTTCCATGGTGGTGTTGGTGATAAGCAAGTGGGAAAGTACAGCGGAGGCATGAAAAGAAGGCTCAGTGTGGCAATATCATTGATTGGAGACCCCAAAGTACTTTTCTGTATATTTTTTTAACCCTTCCATAGGATGTCCTTTTGTTCTTTTGTTAATGTGTTATGCAACCTGACAACACATTCTGTAGGTCGTTTTCATGGATGAACCAAGCACTGGGCTAGACCCCGCATCAAGAAATAACTTGTGGAATGTTGTGAAGGAGGCCAAGCGAAACCGTGCAATCGTTCTTACTAGTACTTATCCTTTTCCCTTTCTACTTTCGCGTCCAATTCTTAGATTCCTAACGCGTCACTTATTGATTTTAAAATTTACAAGAGTATCAAATAGTGTTGATCAAATGTGATTCTCGCAGCGCACTCGATGGAGGAGGCTGAAGTACTTTGTGATCGACTTGGCATCTTTGTCGATGGCGATTTCCAATGTCTTGGAAATCCTAAGGAGGTACATTTTATTGCCTTCTTGAATCACACTGTGTGCTTTATGACCAGATCTGAAACCTCATTTGCGCAATGCAGCTAAAGGCGAGATATGGGGGAGCATACATATTCACAATGACAACATCTCCAGAACAAGAACAAGAGGTTGAACAGCTAGTCCATGACTTGTCTCCGAGCGCAAACAAGATCTACCACCTATCTGGAACTCAAAAGTTCGAACTGCCAAAGCAAGAGGTGAAAATAGCCAAGGTATTTCGCGCAGTTGAGGATGCGAAGAAACGGTTCACCGTGCATGCCTGGGGCCTGGTTGATACCACCTTGGAGGATGTCTTCATAAAGGTTGCCAAGGGAGCACAGGCATCCAGTGATAATAGTTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA030589