Os01g0251200

From RiceWiki
Revision as of 18:47, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0251200

Description

Steroid nuclear receptor, ligand-binding domain containing protein

Version

NM_001049135.1 GI:115435683 GeneID:4327105

Length

4787 bp

Definition

Oryza sativa Japonica Group Os01g0251200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:8296595..8301381

Sequence Coding Region

8296606..8296959,8297082..8297402,8298958..8299166,8299242..8299290,8299603..8299690
,8299798..8300990

Expression

GEO Profiles:Os01g0251200

Genome Context

<gbrowseImage1> name=NC_008394:8296595..8301381 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:8296595..8301381 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcgtcgcgccctcgactggacacctcccctccccgcctcgctcctcaccaccacccctcgccgccttctcgaaccttctagtaccttccccctccccctcctccgcccctctcctcctccacctcctccgatttctccgcctcctccgccgccgcccgcagccgcggagctccccgccgccgacatggacgacgcctgcgccgtctgcgcggagccgctcgagtgggtggcctacggcgcctgcgcccaccgcgaggtctgctccacctgcgtcgcccgcctccgcttcgtcctccgcgacctccgctgctgcctctgcatcaccccctgccccgccgtcttcgtcaccaaggcaatgggggaccggacgaaggtgatccccgatttctcggcgctccgcggcgccggcggcgaggggaaggccggggagtactggcaccacgaggccacgcagacgtggttcgacgacgccgaccagtacaggatgatcagtgccatgtgtcggctctcttgtagcgtctgtgatagcaacaaggaggaggaggaggagcgtactggtaaagcggccaaggcgaagcgtaagagcaagatccggagcgttgatcagctcaaggggcatctcctcgatcgccatggcttgtacatgtgtgacctttgcttggaaggcagaaaggtatttatttgtgagcagaagctttatacaatgtctcaattaaatcagcacataaaatctggtgattcggaggtggatggctcagaggttgagcgccgtggctttggagggcatccaatgtgtgagttttgcaaaagcccattttatggtgataatgaattatacacccatatgacaagagaacatttttcctgccatatatgtcaaaggcaacattctggacaatatgactactttaggaactatgatgacttagagatgcatttccagagagaccattttctctgtgaggataaagggtgcttggagaagaagtttgttgtctttgaaagtgaagcagagctcaagaggcataatggtgtggaacacgggaagcacatgcctggtgctgttgacagtagctcgtcgtccatgcaaaatggcattgcagctgtaggccatgggttgggaggtcaaagtgattcatctcgggtgccattgcaatcattaagcatttcttctagttctgggcaatcatcagaaacaagacaaagctttgcgagaaatcgggtacttcagcaagcatgtgttcctcctctttcccgtcaggaggtccatgatgctagagtaggttctgtccttcaagaagcttcattcccttccctaccagcacaatcaaggaaggcaccagcacatagtcagagctcaaggactgcagcaaggattggggaccagcagtttcgtcctttatcagttactagtaacaggaatgttgctttagcacagcagggtacaagaacattacctgaaaacacccatgtatctgggcttgcacaatacagcaagagaactgagaacatgcaccaagctgttcagcctcagttcctaaaaaataattctttgatcccttctggctcaacaagccgccctgtgcatgtccccagttctgctggaaatgaaaggcaagacacattcagcaacagccaggtgttatccagtgtggaggacattcttgcagcaaataaagccctggttgagaaaatgcgggctgcattaggaatggatcaggatatgttcaacgcatttaaagagatcgctggggaatatcggcaaggtgttatcaattcttcagagtacctttcatatgtaaagcagtttggtctcttgcaccttgttcctgaaatggccaggttattgcctgatgctcagaagcagaaggagcttgcagatgcctactatgccaatttgcgccttacaagcctccaagaaaatggtgggggtggaaccgataactcgaaacaaggcaatcagaataagaaggggaaggggggagttcctgacgccataggaaccagtaatgctgcaacagatccgctgaaagataagttgctgaatactgccatcaagttccagtcaaattacatgccccaggaagggtgttgtggcgtgcagcgaaaagaagggagaacaacagatggatcttctcagggtctgcctttgaagggtgcttggcaaagccgtgggggccagagactcttcatgagcaaagcaaagaagtga</cdnaseq>

Protein Sequence

<aaseq>MRRALDWTPPLPASLLTTTPRRLLEPSSTFPLPLLRPSPPPPPP ISPPPPPPPAAAELPAADMDDACAVCAEPLEWVAYGACAHREVCSTCVARLRFVLRDL RCCLCITPCPAVFVTKAMGDRTKVIPDFSALRGAGGEGKAGEYWHHEATQTWFDDADQ YRMISAMCRLSCSVCDSNKEEEEERTGKAAKAKRKSKIRSVDQLKGHLLDRHGLYMCD LCLEGRKVFICEQKLYTMSQLNQHIKSGDSEVDGSEVERRGFGGHPMCEFCKSPFYGD NELYTHMTREHFSCHICQRQHSGQYDYFRNYDDLEMHFQRDHFLCEDKGCLEKKFVVF ESEAELKRHNGVEHGKHMPGAVDSSSSSMQNGIAAVGHGLGGQSDSSRVPLQSLSISS SSGQSSETRQSFARNRVLQQACVPPLSRQEVHDARVGSVLQEASFPSLPAQSRKAPAH SQSSRTAARIGDQQFRPLSVTSNRNVALAQQGTRTLPENTHVSGLAQYSKRTENMHQA VQPQFLKNNSLIPSGSTSRPVHVPSSAGNERQDTFSNSQVLSSVEDILAANKALVEKM RAALGMDQDMFNAFKEIAGEYRQGVINSSEYLSYVKQFGLLHLVPEMARLLPDAQKQK ELADAYYANLRLTSLQENGGGGTDNSKQGNQNKKGKGGVPDAIGTSNAATDPLKDKLL NTAIKFQSNYMPQEGCCGVQRKEGRTTDGSSQGLPLKGAWQSRGGQRLFMSKAKK</aaseq>

Gene Sequence

<dnaseqindica>12..365#488..808#2364..2572#2648..2696#3009..3096#3204..4396#accaaccagcaatgcgtcgcgccctcgactggacacctcccctccccgcctcgctcctcaccaccacccctcgccgccttctcgaaccttctagtaccttccccctccccctcctccgcccctctcctcctccacctcctccgatttctccgcctcctccgccgccgcccgcagccgcggagctccccgccgccgacatggacgacgcctgcgccgtctgcgcggagccgctcgagtgggtggcctacggcgcctgcgcccaccgcgaggtctgctccacctgcgtcgcccgcctccgcttcgtcctccgcgacctccgctgctgcctctgcatcaccccctgccccgccgtcttcgtcaccaaggtccccctccctccccctcctccccacgaaccctagggttttcgcttccccgatttcccccctttctcccttgcgcgcgcgcgcgcgctcaccacctgttttggttttctcgatttgggcaggcaatgggggaccggacgaaggtgatccccgatttctcggcgctccgcggcgccggcggcgaggggaaggccggggagtactggcaccacgaggccacgcagacgtggttcgacgacgccgaccagtacaggatgatcagtgccatgtgtcggctctcttgtagcgtctgtgatagcaacaaggaggaggaggaggagcgtactggtaaagcggccaaggcgaagcgtaagagcaagatccggagcgttgatcagctcaaggggcatctcctcgatcgccatggcttgtacatgtgtgacctttgcttggaaggcagaaaggtgaactatttttttttctcaatacatgatcctacctgaataactgatacttgagtcattgcttgaagtatgtgatatgtactttggtttgctgtattaaatttagtttgttacacaagtttgatgttcgttctgatgtacgttttaactggttcgacaatattattcattgtgaataaaattgttattttgtacttccagttccatacttccatcgctaactattgtgaaaataattaggtacattatggtcatttttcccccttaaaaattcctttgtgcccaatgccacgagcccatgatacatatgagacaggaattaccctgctgtgcacgatcaatttattattaattcttatctcttttagttgcatgatgctataagttttaacttgcacagaaattatttgatttaacaccaaagcattccactgtagagaaacatagggttgactctgcacggggatttaagtagtgttgagattgaattacttttgcacaacttcacatgtttatcccttgattttacctaccagttgatgttatatttagatctgttaccttatgtataatagcccatattcttcaacctcgttgaagttcccgtgcttttctgtaatgcaatatttgaatgtctaataattaaatagttgatacatttggacgatgtgtgtataactggacatttacagatgcaggcatgcacacaagtagttttttacatgcttaaactggttagaacagatattatatagttaattagcactgcttttccttagacactaattcagaatgtgcagcaagccctgccaatatctgtcatgatgtttcaccttattttctttgcctgtcatgatgatttctacttatatcagtactgcaaaatgtgtatttgaatatagatcctgatatcatgatcatgtggtagatggtgatgatttgattactgtcctctaaataagtgtgttctatctggtccattcgagcatttgtatcaatctggagcacttttttgaaggatggcattgttgttgacttccataattttgttaacaccaactactatgtttagaatgcctaacatgtttatagcctcctccatgaatgttacaaactagtccatggtttttactccctccgttcaactaagtagggtgtcctttacttgcatgcatgttcaactatataaggcacacactgttttcaaagtactaattttttactacttctgtctcaaagtataacaacttttagctatgaatctggacaagcacttgtccagatcaataggtagaaatgcttatattttgggacagagggagtactcactttccctgctaacctggttctgcatcataccatttaatgtgcatgcatgtagtaagtagtattctctgtacaagttaaggaatgtaattaaggcaataattgagggcagtagtccttttccctggatcattggttactctacgtgctgaaagaatacaccttatatagttgaacagatagattactttataattgtggttcctgacttgtatgttgtctctggcaggtatttatttgtgagcagaagctttatacaatgtctcaattaaatcagcacataaaatctggtgattcggaggtggatggctcagaggttgagcgccgtggctttggagggcatccaatgtgtgagttttgcaaaagcccattttatggtgataatgaattatacacccatatgacaagagaacatttttcctgccatatatgtcaaaggtattctgcaagactgcagtcattatcttatttggtgaggcaacagcataatgctgactttgtgattgttaacaggcaacattctggacaatatgactactttaggaactatgatgacttagaggtatgctatatatatatcaagctggcatacttgtatgaaatcaagtactgtcttaaattcaatccggacatggacacagaccctgtgaatttcaaatccaacatcaacattacattagagaaaaacaggatgagatgaaatgttgcatgaaaagtgactggtccataaccatatccaaataagtcatacttgaattatgttaatgtgttccatctaataagttgaattatggccatcttatgctactaagtttaatgctcacttgtatttgatttgaggttacaatttagcattgtgcttgtctgtattcagatgcatttccagagagaccattttctctgtgaggataaagggtgcttggagaagaagtttgttgtctttgaaagtgaagcagagctcaaggcaagtgaatacagttgtgcacatcacttgctggaaatgtcaccattctactttttgagttgtctatgcttagttgatctttcattcaattctcttattccatccagaggcataatggtgtggaacacgggaagcacatgcctggtgctgttgacagtagctcgtcgtccatgcaaaatggcattgcagctgtaggccatgggttgggaggtcaaagtgattcatctcgggtgccattgcaatcattaagcatttcttctagttctgggcaatcatcagaaacaagacaaagctttgcgagaaatcgggtacttcagcaagcatgtgttcctcctctttcccgtcaggaggtccatgatgctagagtaggttctgtccttcaagaagcttcattcccttccctaccagcacaatcaaggaaggcaccagcacatagtcagagctcaaggactgcagcaaggattggggaccagcagtttcgtcctttatcagttactagtaacaggaatgttgctttagcacagcagggtacaagaacattacctgaaaacacccatgtatctgggcttgcacaatacagcaagagaactgagaacatgcaccaagctgttcagcctcagttcctaaaaaataattctttgatcccttctggctcaacaagccgccctgtgcatgtccccagttctgctggaaatgaaaggcaagacacattcagcaacagccaggtgttatccagtgtggaggacattcttgcagcaaataaagccctggttgagaaaatgcgggctgcattaggaatggatcaggatatgttcaacgcatttaaagagatcgctggggaatatcggcaaggtgttatcaattcttcagagtacctttcatatgtaaagcagtttggtctcttgcaccttgttcctgaaatggccaggttattgcctgatgctcagaagcagaaggagcttgcagatgcctactatgccaatttgcgccttacaagcctccaagaaaatggtgggggtggaaccgataactcgaaacaaggcaatcagaataagaaggggaaggggggagttcctgacgccataggaaccagtaatgctgcaacagatccgctgaaagataagttgctgaatactgccatcaagttccagtcaaattacatgccccaggaagggtgttgtggcgtgcagcgaaaagaagggagaacaacagatggatcttctcagggtctgcctttgaagggtgcttggcaaagccgtgggggccagagactcttcatgagcaaagcaaagaagtgacgaattggttttgcaggtcaagttagttagacctgccatttgagccgctacgaaatgtcaaggtttgtgtctatctggtgtgtgtctgatagttgagtacatgagtgcagcaatcatgtgtgatgcgtttgcattttgatttttttttcttttttgtctatcatgtgtggtgcgtttgcattttgatttttttttctttttgtctattttttgtgtggtgcgtgcgtttggtagaccatggaacttgagactagaacggtccacaccatactgcatagtggagttttgcaacttcacatgagtgaatttgggctatagacggttctgttgctgtcaactcaaaactccttttaatacgaagttatggtcaaaatcgtaccttgatagagat</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0251200, RefSeq:Os01g0251200