Os01g0811100

From RiceWiki
Revision as of 19:00, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0811100

Description

Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha subunit G) (20S proteasome subunit alpha-7)

Version

NM_001051123.1 GI:115440616 GeneID:4327357

Length

4419 bp

Definition

Oryza sativa Japonica Group Os01g0811100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:36226902..36231320

Sequence Coding Region

36227511..36227614,36227712..36227751,36227833..36227916,36228170..36228243,36228314..36228400
,36228510..36228594,36228803..36228849,36229636..36229701,36230895..36230985
,36231065..36231136

Expression

GEO Profiles:Os01g0811100

Genome Context

<gbrowseImage1> name=NC_008394:36226902..36231320 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:36226902..36231320 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcagcataggcacaggatacgatctgtccgttaccaccttctctccggatggtcgcgtcttccaggttgagtatgccacgaaggctgtcgacaacagcgggactgttgttggaatcaaatgcaaagatggaatcgtcctgggtgtggagaagctagtaacttcgaagatgatgctggagggatctaataggaggatccattcagtgcactggcactctggcttggctgttgctggtttagctgcagatggcaggcaaattgtttcaagagcaaaatcggaagcggccagttatgagaaggtctatggtgaacccatttctgtaaaagaattggctgatcgtgtggctagctacgttcatctttgtacactctactggtggctcaggccttttggttgtggagttattcttggaggttatgatagggatgggccacagctctacatgatcgaaccctcaggagtctcatacaaatactttggtgctgctctgggtaaaggaagacaggctgcaaaaactgaaatagagaagttgaagctttccgagcttacctgccgggaaggcattgtggaggttgcaaagatcatttatggagtacatgatgaagctaaggacaaagcttttgagttggaattaagctggatatgtgatgaatcaaatcgccagcatcagaaggttcctgctgatcttttggagcaggccaaggttgcagctcaggcagcgcttgaggagatggatgctgattaa</cdnaseq>

Protein Sequence

<aaseq>MSSIGTGYDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKD GIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKV YGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKY FGAALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKAFELELSWICD ESNRQHQKVPADLLEQAKVAAQAALEEMDAD</aaseq>

Gene Sequence

<dnaseqindica>610..713#811..850#932..1015#1269..1342#1413..1499#1609..1693#1902..1948#2735..2800#3994..4084#4164..4235#ggagtgaaaaaaaaaaaccccaaaagaaagaaatctccttctctctctcgatcccgtctcgtctcgtcagtctgcacccggttgcctccccgccgctctcctctccggtctactcctccgccgtcgccgtcggcaccgccgccggagctcctccctgctccctctactgggttggcggggagtggatcggggatctgcacgcaggggccgatttcttctcttcgtaaggtatgccctagctcttccctgggatcgatttcgctcctgatctagttcgttctggtctccgctgtgaatttcaggaaatctgttccaaatataggtgtttctaggggaattattccgtccaattagtgtacatgccctgcccatggtttaggcgtggagccccgtagatgaagaaccccctcttgactattttgtaggatgtttttttagttaagaatttagttcatttgatgcgcagtaagatcttctttcatgcattgctgagcgcagtatggggtgatcttctgttttgattgattgtgtggatgtggattatagacagctaatccttagggttttttcgtgttttcttcaggagtagataacacagaatagttgaagatgagcagcataggcacaggatacgatctgtccgttaccaccttctctccggatggtcgcgtcttccaggttgagtatgccacgaaggctgtcgacaacagcgggttcggtttaactgctcccctttctttccttccttttgctaccgcttcttcctttctgtgtgcaattatgtaatgacgttctaatatttgttaacaggactgttgttggaatcaaatgcaaagatggaatcgtcctggtaatgtctgcaaactgatagataaatttcaaagaggtgtattttttgtgctcgattgacatttgtttgttggttctttagggtgtggagaagctagtaacttcgaagatgatgctggagggatctaataggaggatccattcagtgcactggcactctggcttggtaacatcttgcttccctgtacatagatcctcaaatgtattacgatttcagtgtaaaaaaagtacaattgatgaagaataaagcaaggatgttgtttatatattttaatttctacctctatattctaggatataattctcattaatgttatggtaaaagaagttgttctctgtcggggcttcttttccccatctttgtcttccactcaccccataacacatcgtgtcctttaactataaaatattttttccaggctgttgctggtttagctgcagatggcaggcaaattgtttcaagagcaaaatcggaagcggccagttatgagaagtacgcacataaacttgtaggccatgtagacataattttatgattatcctctaatgctgtgatgtactagggtctatggtgaacccatttctgtaaaagaattggctgatcgtgtggctagctacgttcatctttgtacactctactggtggctcaggtaagacgttggcataattgttgcattattactggagacatggcttacatgatttaataaaataattattgttcggttagttgattctaactatatttacatgtatcaggccttttggttgtggagttattcttggaggttatgatagggatgggccacagctctacatgatcgaaccctcaggagtctcatacgtaagctaacactacagtacacaagaagtcaaactcgtcttaggctcttggtttttgtttttttcatctctatgtgaaccattattagcaattaaattgttcaatggatgcatataggagcattccacaccatatttttatacatagatatttttatagttccttctgggatctgagcatattattcactgagctgaatcctgaacagaaatactttggtgctgctctgggtaaaggaagacaggctgcaaaaacgtaagtttatcagcttcaaattgtattgggtgctctctttgtcagcactaatatcttctgttttaaaacaaagttggtgcaattatgaaaattaactatttcatattttccaagagaacacaggtattgttaattcatcgcaacccagcttgctgataattggaatatgagggagggtagttcctccattgtccataatccatataccatcttagcatttgtaatcatcagatccttacaatgtccatccatgttttgtttggttttaacatagaagtatgaaacgaccaaaccacattaacatactgatacaattacatgtttaacggttgttatgccttttgttgtattgacccatcacttaatttgtgtgaatcactggagtgttaatgtggatccaatgatccatgtacagatgggtgggattggtttaaaacccacttttcatgaaatttcaatatgtggttttggtcatctttacccttctcatagaggaaagagaatatgtgtttttggtcatcattacccttctcatagaggaaagaggtaccattaagccatatagcttatgcaaattaggacttgtttgatgagaactctcagcaatcattttagatcgacctctacagaacaagcctgtcaattctgtaattgtctatctgtgtgtggatctgatgtcttgttggtagctactgttgagcatccaacattagcttttgcttcgatttgcaccatcttggtcatcagaatagttctgattccaacttttcaaatgctgtctttcagtgaaatagagaagttgaagctttccgagcttacctgccgggaaggcattgtggaggttgcaaagatgtatgtattgaacaccctttctccaacaataataatataattgtgttcatgaattttgcactttgttttgactgaatgcatatcatctacagtttttttcattcatatttttctatatattatttgatttcacatatgtttgatgccattcttcgttctagtggttatacctgcaacatcatgcataagatttatttgctactcccagtaaatggcgttctagaacatgtgcagttaaaccttgaaatctttactcactaattaatgcaaaaagggtcagatttcatatgtggaaagtgacattaatagatttatcatcaaaaataaattcatgtagttgtatttttaataatatttaaaggtatgactagaaaggaacaatgatcaaacatgtgaatcggaaattgtgttgatgtcctagacatcatctaaaatataacagaggtagtaataatcatttagttatttctgctttaaaataaaagtactccctctgtcccaaaataagtgcgccttctagcattggaaagccaaattatgaggggagggaaatgacctagatacctcttagagtatgtacaatagcaagctgtaagccagctgcaaacatattttaaagagataaataaggagagagaaaagcagcgggctacagatttgtagccagctgtaacacggactacaagacgcagtgtgtgtatgacaggtgggaccaggtattaatagtgtagtatgtaactattgtatagatgagctattagattggctatagatgaattggagctagtggttggctatactattaaacttgctcttattaaacgagggatagttaggagtgggaagacgtggaggaatttgaatgggtggtgattgataggataagtagtactctaaaagagcacttttttgggacaaattttaatccttaaggagcacttattttggcatagtgggagtagttggctacataatcatattggaacattttattgtaggtagattcttcttttaaaggtaggttctagctcgcatgaactgtcgatgtcaactgatggtaatgaacaaagcagactaacaaaatagtttgggatgttttttctctaataatatttagaaatcctttttgaataaagctacttgtctgacaaaaaaaaaacagttctcactttcttataatttgttctgtgcagcatttatggagtacatgatgaagctaaggacaaagcttttgagttggaattaagctggatatgtgatgaatcaaatcgccagcatcagaaggtgttctgttgttatttaaaaataaataaactctgtccatatttttgtgaactttgctcacttggcatactgcatacaggttcctgctgatcttttggagcaggccaaggttgcagctcaggcagcgcttgaggagatggatgctgattaagaggagacccgactatgttctacgtttggccactgatgaaatctttgatgtcattactggcacacagggacatggccattctgtcggattttaaaacttcgcatgtacttatggtactaaattcatggaaagtttgatgctggacagtgaatggatatctgacttttgactgaacttgtccctt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0811100, RefSeq:Os01g0811100