Os02g0125800

From RiceWiki
Revision as of 19:08, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os02g0125800

Description

Transcription factor Tfb4 family protein

Version

NM_001052283.1 GI:115443936 GeneID:4328152

Length

4171 bp

Definition

Oryza sativa Japonica Group Os02g0125800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:1347163..1351333

Sequence Coding Region

1347868..1347925,1348040..1348135,1348447..1348523,1349385..1349453,1349576..1349629
,1349865..1349910,1349987..1350024,1350295..1350341,1350424..1350694
,1350978..1351066,1351163..1351187

Expression

GEO Profiles:Os02g0125800

Genome Context

<gbrowseImage1> name=NC_008395:1347163..1351333 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:1347163..1351333 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcctcctccaagctctactccgatgacgtcagcctcgccgtcgtcgtcgtcgacaccaaccccttgttctgggccaccgccgccctccccttcgccgacttcttcgcccatctgatccactacgtgaactcgctcttgcttctgaaccacctcaaccatgtggtcgtcatcgccgcggggcttagctcttgcacctacatcttcgactcgagcgatgctagtgcctctggtgctgcagacgtcgcggccaccttcgcaaaggcgagccgcaagatggatgagttcattgcagaagacgcccgtgccactagcagcaatggttccgttgctgatggcaatgcagcctctcttctctcaggcgcactgtcccttgctctgtgctatatacagagggtttttcggtctggtactcgacatccacaacctcggattttatgcctgcagggttctccagatggacctgaacaatatgtagcggtcatgaactcaatattttctgctcaacgttccatggtcccaatcgattcatgcatagtaggaacccaagactctgctttcttgcaacaggcttcatatataacaggtggagtttatttgaaaccccaagaactaaatggtctatttcaataccttgctgctgtatttgcaactgatttacactcaagaacctttctgcgcctccccaagactctgggagtggatttccgtgcttcatgtttctgccataagaagactattgacatgggatatgtttgttcagtttgtttatcgatattctgcaagtatcataagaagtgttcgacctgtgggtcagaattcaaccgtgtcatgcccgacttaaattctgtacctgatcaaaggcagtag</cdnaseq>

Protein Sequence

<aaseq>MASSKLYSDDVSLAVVVVDTNPLFWATAALPFADFFAHLIHYVN SLLLLNHLNHVVVIAAGLSSCTYIFDSSDASASGAADVAATFAKASRKMDEFIAEDAR ATSSNGSVADGNAASLLSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVA VMNSIFSAQRSMVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFAT DLHSRTFLRLPKTLGVDFRASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNR VMPDLNSVPDQRQ</aaseq>

Gene Sequence

<dnaseqindica>3409..3466#3199..3294#2811..2887#1881..1949#1705..1758#1424..1469#1310..1347#993..1039#640..910#268..356#147..171#gcgcagccgcaactccgccgagttcgccgcctccgcctccgcctcccgacggcggcaaggcaaccgctcgcgccgccgccgcctcggcccaaccagcgcctccgttcgcgcgtgtccggccctgccgcgacggcggtgagactgccatggcctcctccaagctctactccggtaagcggcgcccgaccgtctccgttttctgatccctttgcgtctcgctaatcttccccccttttctcttgcctcgtctccaccgcgcctgcgcagatgacgtcagcctcgccgtcgtcgtcgtcgacaccaaccccttgttctgggccaccgccgccctccccttcgccgacttcttcgcccatgtacgccgcgacctcccaaaccctatttcccttctcgtcccccgcttcccctctcgatttctagtttttgattcacatctatatcatggggattaaccacggaaacacgatcagtatctagttgcattcacgctgatctagctagtttgattttattctgactcctccagagaggatcaatctctagttgctcgctgatctagttagtttgattttgactctgaattctccagagaggagaggatttacacttaatactgatgcaattccggggtgtatgtagctgatccactacgtgaactcgctcttgcttctgaaccacctcaaccatgtggtcgtcatcgccgcggggcttagctcttgcacctacatcttcgactcgagcgatgctagtgcctctggtgctgcagacgtcgcggccaccttcgcaaaggcgagccgcaagatggatgagttcattgcagaagacgcccgtgccactagcagcaatggttccgttgctgatggcaatgcagcctctcttctctcaggcgcactgtcccttgctctgtgctgtatcctatgactggtactgatttcttattgttagtgcattttccatttgtgcttgtatttcttaacatggaggatgcttagatatacagagggtttttcggtctggtactcgacatccacaacctcgggtgagtatacactctgtgtgtgttctaagttaccttttgttctgattcctgttgatatgttgacctatgagaacaacatagaagggagcatatcagttagcataaatgtttacaatgcgcatgctgtatggactaaaaaaacctgataggcatctgacccatcactaatgatataattatttaattttctttgttttcttgaatttttctactcaatatcctcacaacttattctagtggcatcatgtattatgctaacacgaaatacagattttatgcctgcagggttctccagatggacctgaacagtacgcacattcatcgatttgattgtgtagtatatattttctggaacatgttttaactcaatgagatgctgcgcagatatgtagcggtcatgaactcaatattttctgctcaacgttccatggtattgcatgaactgtcactattccgtacatttgggttcattgttcaattcattttattgatactcttgatgtcacctcaccatttcacaactgtagtggttttagtgagtcccaactgcaagtagcactacctctagacatgtctatatgactatatacatcaccagtttcattgcttaaaacattcactaacaactttggtccttattttttttttctatcaaaaaaatttaggtcccaatcgattcatgcatagtaggaacccaagactctgctttcttgcaacaggtaatgttcttcagtgccttcttggtctttctttccatttataacttcttttacatgtatgcccccatagagctgtctattccttgctgaatgctgatcatatactggcctttcatttgcaggcttcatatataacaggtggagtttatttgaaaccccaagaactaaatggtctatttcaataccttgctgtaagtcattctggcacttctgtagcaacacacatattttctcatgcaaccatggttacatctttataactgcatgatgcatttatataaagcctgtggccatcttttctgtgtaataatgaaaaattaagaaggcaactaacctccagcacatgaatctgatgtaactctttaaaagaaaaatgccagatcagcccattttcattttgtgaaaaaaaataatatcaactttcatctaaggttgtctaggctcttctgttttcctgcctttgcttgaatgtagaatgtactagtaatgtttgggaactcatgcatctctagtgagtgtggcttgtttaaagtgtgcactcaagcataatatttcctgtatgtctcaaactgtcaatctgggaagatcaacacaactacatctctaaactttagtgccaaatgattttggatgctactagtagactacaaagttgaatgccctctcagtgtctatgttcatgagttcatctcctatgtcaaaactcaatattttctgtcactagagtggggcacatagatactccatcttcctggtactggtagtatatctacctgttaatctagaatcagattcacatatatatgtacaatacactaatgaacaacaatggaatcatcagattatggcgtgatagactgtgctgtttacttctgacccaaatctattgcttcaatatcagcttacgttgacctgtttttggaatatatatattagttccaaagttgctctgttttgtgtttgtctttattctatctgagtaggaatatttctatttcagataacttgattaatttgcttgagctcaatgactcatttctgcaaatatgcaggctgtatttgcaactgatttacactcaagaacctttctgcgcctccccaagactctgggagtggatttccgtgcttcgtatgtgtcactcagtttcctctattaagttctctaggcattaggcatatctctgtttcttcatcttcttgaatgccttgtgacatagctatgagatgcttgttatagatctgaaaacatagcataataccaatgacaatttcagaaaaatgtgagaaacatacagctaattttttttgtgaagttctatcttaccaaaggccttaggtcaggattagcagctcagtttatttttgtttttaagtttccattcagtttgtctgatactggtggcctttcaactgcatctaatttgctatatttcttttcagatgtttctgccataagaagactattgacatgggatatgtttgttcagtttgtttatcgatattctgcaagtatcataagaagtgttcgacctgtgggtatgttatagttgctttgtgtttctattcttttgtctttttcctgagagctttaatttgtttcagtaagaatcagattgtttgcttgtttaatttgatgtgctccgttcacaggtcagaattcaaccgtgtcatgcccgacttaaattctgtacctgatcaaaggcagtagtctacactacagatggcgaaatatcagactgcagacttctctttatgttctccacaggttcgtctgatgtgtctcttaagaaacttcggtgccactatcttctatagttaaaagatctcatttgtaaaatatagactacttcatctgcattagctgacccccagacatgcattatgcgttaatgatgatgacatgcacatacagtgcacgccatatctagtctagtttcaaattttacctaccttgtgttcttatgtgcgtaggttcatgcccgtgctttgttccattctgaaatgtggttcattttccaggaacatctatcctagcattttagcctcaatgacatgcacatttatttcttagatacgatacatgatgctggatcagcctgtccctgattttgacaggttcaactgatacagaatgggcattgtgtgcatacttgaagcagcgtcagtttagcaaaaactaggcaactgggcgtagcaattttgtcaactgatgagggaactcacgcccgacttttggaattagtttgcctgcaatttgtaaagttggcacatgaacttgtgatgcaccatttgcaaatgctcttttttgcttaccgaaaacaggacaacaggtcaagctagtagatggcaaatcatttttcttgtcatggtgacacaggttgcgctaatgtcttgatatattacttcgagctcc</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0125800, RefSeq:Os02g0125800