Os02g0557600

From RiceWiki
Revision as of 19:17, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os02g0557600

Description

Translation initiation factor SUI1 domain containing protein

Version

NM_001053675.1 GI:115446720 GeneID:4329675

Length

6183 bp

Definition

Oryza sativa Japonica Group Os02g0557600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:21973791..21979973

Sequence Coding Region

21974211..21974335,21974438..21974808,21974954..21975225,21975757..21975865,21976314..21976714
,21976792..21976887,21977007..21977197,21978631..21978742,21979088..21979222

Expression

GEO Profiles:Os02g0557600

Genome Context

<gbrowseImage1> name=NC_008395:21973791..21979973 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008395:21973791..21979973 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgttcaagaagcatgttgatgtaaaggctctacagcgtttgtcgggagctgacaaaaagaagctcagaagaactgccaaggaaaggttcccacaagcatctgatgctgaccttgatgccatccttcctcccaaggttgaggtaacagttgctaagtacccaaatagggttcttgtatatggcatagagggagagttcccaatgcttttcgacattgatggaagaggccatgagctgtttccaacagtttatgcactctggaaggttcccgatctgttgcctgcttttacacttaagggtggtgaagtctcacgcttcatactggggggtgccgatctgatgtttcctggtattagcatacccccagaagggcttccttcctttcaacctggccagccatggtcagtaaaggttcctggtaatcctgctccaattgctgttggggccacaactatgagcagtaatgaagccttaaaggcagggttacgtggcaaggctttgcggattactcactactttaaggattcattatgggattctgctgatggtcgctatgttccaaatgaaggattttatgaggacattgttgttgaagatcgtaattatgcttcaccgtctcaacctgctgattcttctgaagatcatgtagaaggcatgcatgacagtaccattgaaggtgaagaagctgcagttgatgtttctgagagccataccacagatcatgacatccacgttgaggccatagaagatttaactgctggtgtgagtgaggtgaaattgcctgaagataatgctactgaggaaccaactgaggaaagggaacatcagaatttgtctacggaagaaattgactctcttttagataaatgtcttctgcaagctttacacacgagtgtaaaagataaagaccttcctattcctggaagtacattgtggtcaaatcacatactcccctgcagacctacaggtgttactctggatattaagaagtcatcacacaaaaagctatccaagtggttgcaatcaaaatcttccgctggccttatttcatcaaaagaagacaagcataaaaaggaagtcatgttgcttcgtatcaatcgtgggcatccagattacatggcctttaaaccagaaaagagggtacaggagcctgttgtacagcatgataatgttgttgctgaaggtagcagcacgaagcaactggaagtagcagaaacttataagccaagctctcatgttaaccccatatttatggctgttggagcggacacgagcaagtactatagtgcatcagaggcatctgacatagtcttcaggtacgttgaaaaggaaaatttggttaaacaaacagacaaggccaaagtagttttggatgttgcattatgcgacgctctctacaaaggagccatcaaaaagggttcagcatacccaaccgagatccacaagagggacctggggtcaacatttttaaaccgaatgcagattcaccatagagtagcaagagggaacgaggtggtcattcgcaagggcgccatacgaaccattcagatcatgacagagagaaggcaaggaaacaagaagatgacccggctatctggattggaatgcttcttaatggatcctgactcgttagcttctgagctgcagaagaagtttgcttgcagcaccaccacagctgagcttccaggtaagaaagggcaacacgaggtcttggttcaaggtggagtcatcgatgaccttgcaaagcaccttgttgatcattacggtgttccgaagaggtttattgaggttcttgacaaaacaaagcgttag</cdnaseq>

Protein Sequence

<aaseq>MFKKHVDVKALQRLSGADKKKLRRTAKERFPQASDADLDAILPP KVEVTVAKYPNRVLVYGIEGEFPMLFDIDGRGHELFPTVYALWKVPDLLPAFTLKGGE VSRFILGGADLMFPGISIPPEGLPSFQPGQPWSVKVPGNPAPIAVGATTMSSNEALKA GLRGKALRITHYFKDSLWDSADGRYVPNEGFYEDIVVEDRNYASPSQPADSSEDHVEG MHDSTIEGEEAAVDVSESHTTDHDIHVEAIEDLTAGVSEVKLPEDNATEEPTEEREHQ NLSTEEIDSLLDKCLLQALHTSVKDKDLPIPGSTLWSNHILPCRPTGVTLDIKKSSHK KLSKWLQSKSSAGLISSKEDKHKKEVMLLRINRGHPDYMAFKPEKRVQEPVVQHDNVV AEGSSTKQLEVAETYKPSSHVNPIFMAVGADTSKYYSASEASDIVFRYVEKENLVKQT DKAKVVLDVALCDALYKGAIKKGSAYPTEIHKRDLGSTFLNRMQIHHRVARGNEVVIR KGAIRTIQIMTERRQGNKKMTRLSGLECFLMDPDSLASELQKKFACSTTTAELPGKKG QHEVLVQGGVIDDLAKHLVDHYGVPKRFIEVLDKTKR</aaseq>

Gene Sequence

<dnaseqindica>5639..5763#5166..5536#4749..5020#4109..4217#3260..3660#3087..3182#2777..2967#1232..1343#752..886#gggttccagaaccttctcgatccctcctccccctctccgcctccgcctccgccctcctccgctccgatcgccgccggctcgtcgccggtaacgtaaacgagtcctcatcctccctctcttctctcttcctctgtagctctctcgattcgtttgccctctttttttttatttttgccgtagtaggcggtctatttcttgtgttggtgagatgctgtgatttctttgggatgttgtgctaactcgagaagaaggagacacagtttattgtgggtggattggattggattgctgctttagcaattttgattttgttggtgctcctagacctactactatccaatccaagaactagatgtgcaaagacgggacgtagtcgttttgccggcggattaggatgagagctattagtttgttttaactaggttaattgtactatccctaggacgatattggatggctttgaactttcaaagttatgacataatcaatattcttggtgatttgtgtgatgtggtttttgttgccatattaccatgtagtaggagtacaataaggtccgcatatttcttctcttttctttgcggatagtcggcattttcttcttccaatgtgcctatattaacttaaaccctactgttgcagctggctaattttcgttgttcctcggttgctttatttttgctcctatttttttttgttcatttctgcatttagatgacctagtcaatgtatggttcaggtttcataagccatgttcaagaagcatgttgatgtaaaggctctacagcgtttgtcgggagctgacaaaaagaagctcagaagaactgccaaggaaaggttcccacaagcatctgatgctgaccttgatgccatccttcctcccaaggtggttaacttcttttaatcatatgaaatatgacattgtaacacggtattatgttttgaaattatactgcatggtttgagctccacaattagcacaaggattgctacatggttagagctctgtccttggtagggaatgttgacatacttcccatgtgattatggtgaagttatatgtcatacatcctttttaatattctttcattatttttattgtgtgtcgactggatccttcttgcctaaatctactagcattagtacagagagcacttgcaagtattttactcaaacctactgtctctttctagcgcttaccatgacttcttttggtgcactgtatgtataggttgaggtaacagttgctaagtacccaaatagggttcttgtatatggcatagagggagagttcccaatgcttttcgacattgatggaagaggccatgagctgtttccaacaggtatgtagtttttgtttctagattactacttttatttccattgggttatctcaatcttgttaatatcatttttgttgtagttatttttgaagccgtgtttttattgtgtatgcacataactcattaagaacagagaatctaaaacactcttgtgcttcctgtaatgagtgaagtatcttactgttataatcatcgatttcttaaatacgagtaggatatctcctgattaatggaaatatttttcatgtagatatcttgttggttagttgttgaggctgactgcttattctaggatgttggtaattctcactgtcgtactatatttcctatcggtagcttgtattactgttgtattctaagcaaaaggtgatatggtgctaaacattctttaatatccttaacaaaggatttgtggacatttctgttactcatttccagttattatacgcttttttgcgggggtgttcattagtttttcctgcataactgacgagctgtttggatattagattttaacaacatcagatatcttaagattcagttttcagtaaaatcattttggatgttgctagctaagtttaaccaaaagtagttatctggagacccagtcctcttgtaatactcttcaaatatttgaagatttgttgcttcccaataatggtctttgaaaatttgctgtcctaagtcacgctgacgtgtaactagttgaatttttttcttttttcctttttctttgcaagaacaagattgttatatcctcattctttgcgagtctgcagatgcataaaattagcaatttgtagaacagcaaaatgcatttgttgcaaatgcacccaagcaaatttgaatccatattccctaccattatttcctcttctaaccatatgttgatgataagtgaccaagagccaattcctagttatagccgccgcacctcattcttatcctggatgaaaaaggctatctccttgctgctgaccttgaggcagtgttcacagaaccagccaaactataccaagcacccttacctggtatcatgtttttttagtgacatttagctttgtgcctaagagcttggcatcaacttgtaactcctgtcatcattgagtattgatgcttgttagtaatgatctcaaccaaacaggcaaacgccatgttatgaactcatttaatgtgttttatccaaacaaacaagtatataaacacaaaaacatgacagcctatgttttcaaaaactgataccgaaccgccaaaaatgtttcaaagtatgagttgttatactctagcatgacattggcaaatttaatgaagttatgggttgacctgaaaagttaaatgctttgggacagttctagtcttattatcttacaatcaataatggttgtgaatctaatattcttcagaacatagtttaacgggtgaaaatattgcagtttatgcactctggaaggttcccgatctgttgcctgcttttacacttaagggtggtgaagtctcacgcttcatactggggggtgccgatctgatgtttcctggtattagcatacccccagaagggcttccttcctttcaacctggccagccatggtcagtaaaggttcctggtaatcctgctccaattgctgtaagttccccttcttttctttttttgttccctttacattttggttgccaaaaagattgtagttatgaaattctgttagttatgtgcaagtttttcattgccatacatgcttaacgcaggttggggccacaactatgagcagtaatgaagccttaaaggcagggttacgtggcaaggctttgcggattactcactactttaaggattcattatggcaagttcaacggctagatctgaattcacttgtgagcttagcttttcttaagttaacattattagattttattgcagggattctgctgatggtcgctatgttccaaatgaaggattttatgaggacattgttgttgaagatcgtaattatgcttcaccgtctcaacctgctgattcttctgaagatcatgtagaaggcatgcatgacagtaccattgaaggtgaagaagctgcagttgatgtttctgagagccataccacagatcatgacatccacgttgaggccatagaagatttaactgctggtgtgagtgaggtgaaattgcctgaagataatgctactgaggaaccaactgaggaaagggaacatcagaatttgtctacggaagaaattgactctcttttagataaatgtcttctgcaagctttacacacgagtgtaaaagataaagaccttcctattcctggaagtacattgtggtatgtgtgtatacatagtcattccagtttctcatgatccattgttctatccttatatatctaatacccctgcagcgtaatgatataattattatggatttgacttcctctacagctttttagtgattcaatttttcttcacatgaaattatttgccaagtctttttaacattgtaatacaattgtattttacttcaattttgggtatcaggacattatgcaattgtattttactttagttttgggtatcaggacattatgttggcaaattatgctctgtgttatcagtgttactttttttacatggatgaaggaagcaaaggtttaataattagccatgttggctttagcaagagtcaatatgttcaactattcactgagctgcatgtcctagctttctttcactcaaatctattgttatttatcttttgcattttgcattgttcaggtcaaatcacatactcccctgcagacctacaggtgttactctggatattaagaagtcatcacacaaaaagctatccaagtggttgcaatcaaaatcttccgctggccttgtaagatagtgcattgaacttttctggtttcctttatgtccatgatttacaatagatgcatttagtggattcactgaattgttgcatgtgtggcaagtaaaatataagaaacatggtgctccataaggattcctgtgtttgacttgtgaactatttgaatgtttctcatggttatgtagagcgatgcatgctgtaatcgtagatttctatttcatagtgggaactgtgcaagtttgaatgtgtttgaagtgggtcatttttggcaaacctgtacggatgttatatggtagttctgacatattttaaaactctattgacctccgtttttttaatagagttcgcaattgaagaaccagttgcatatttatcagaacgtatttattaagctttgttgccatactattcatgataacatgtaagatttagagaactggtgatgtatgttgacttcacctgtgataccatatcagacatagcaagcatttaccgataaccaataatattactatgttctgttattttttttcacagatttcatcaaaagaagacaagcataaaaaggaagtcatgttgcttcgtatcaatcgtgggcatccagattacatggcctttaaaccagaaaagagggtacaggagcctgttgtacagcatgataatgttgttgctgaaggtagcagcacgaagcaactggaagtagcagaaacttataagccaagctctcatgttaaccccatatttatggctgttggagcggacacgagcaagtactatagtgcatcagaggcatctgacatagtcttcaggtttgtctccagaactattttctcaggaaaatgtaattaattactgtggaagtaggtgcattgctggaggctctatatttgcagagtgtgtagttgtgaattttgcttaacattttgaccaattcatgttctgttgtgaaccaaggtacgttgaaaaggaaaatttggttaaacaaacagacaaggccaaagtagttttggatgttgcattatgcgacgctctctacaaaggagccatcaaaaagggttcagcatacccaaccgagatccacaagagggacctggggtcaacatttttaaaccgaatgcagattcaccatagagtagcaagagggaacgaggtggtcattcgcaagggcgccatacgaaccattcagatcatgacagagagaaggcaaggaaacaagaagatgacccggctatctggattggaatgcttcttaatggatcctgactcgttagcttctgagctgcagaagaagtttgcttgcagcaccaccacagctgagcttccaggttgtaacctatccctggtctttatttcttgataataaacaaaacaagggtagaactttgtggatgataaagaacatttacaatctggcatattttttccaggtaagaaagggcaacacgaggtcttggttcaaggtggagtcatcgatgaccttgcaaagcaccttgttgatcattacggtgttccgaagaggtttattgaggttcttgacaaaacaaagcgttagaggacaggacagaagcaggcagactctcagtgccggaggagcctgaagtatcttcagggacagcgcaggaagagaatgcagaccaatgcttaacgatatcaggattgtattctgtgactgccatcatcagaagaaattatgagaagatacctcttctcaccacctctggtttttatgcttggaaaatacttttatccttttttgtgtttacagaaaaatgagtagggctgttctgacttctgtctgaaattttggtgtgtacccgttccttttttgtaacgttcttttggtgccgtgttcattctcctgaaaaagcaccttttttgtgtgagatacgtgttacgtttcgttagtgacagacagggtttgacgctttttaacatggcatagtgctatggttaattcaatacatgctttcat</dnaseqindica>

External Link(s)

NCBI Gene:Os02g0557600, RefSeq:Os02g0557600