Os03g0347500

From RiceWiki
Revision as of 19:35, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os03g0347500

Description

Similar to Senescence-associated protein (SAG29)

Version

NM_001056634.1 GI:115452996 GeneID:4332825

Length

3442 bp

Definition

Oryza sativa Japonica Group Os03g0347500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:13056688..13060129

Sequence Coding Region

13057119..13057454,13058737..13058856,13059189..13059561,13059709..13059745,13059935..13059971

Expression

GEO Profiles:Os03g0347500

Genome Context

<gbrowseImage1> name=NC_008396:13056688..13060129 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:13056688..13060129 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggttcaggcattggtctttgctgtggggatcgtaggcaacatattgtcgttcttggtcatccttgcaccagtgccgacgttttatcgggtgtacaagaagaagtcgacggagtcgttccagtcggtgccgtacgcggtggcgctgctgagcgcaatgctgtggctctactacgccctcctcacctccgacctcctcctcctctccatcaactccatcggctgcctcgtcgagtccctctacctcaccgtctacctcctctacgcccccaggcaggccatggccttcaccctcaagctcgtctgcgccatgaacctcgccctcttcgccgccgtcgtcgccgccctccagctcctcgtcaaggccaccgaccgccgcgtcacgctcgccggcggcatcggcgcctccttcgccctcgccgtcttcgtcgccccgctcaccatcatcaggcaagtgatcaggaccaagagcgtggagttcatgcccttctggctctccttcttcctcaccctcagcgccgtcgtctggttcttctacggcctcctcatgaaagacttcttcgttgccacgccgaacgtgctgggattgctgtttgggctggcccagatggtgctgtacgtggtgtacaagaaccccaagaagaactccgccgtgtcggaggcggccgccgcccagcaggttgaggtcaaggaccagcagcagctgcagatgcagctccaggcgtcgccggcggtggcgccgctcgacgtcgacgccgacgccgacgccgacttggaggcggcggcgccggccaccccgcagcggccagctgacgatgacgccatcgaccacaggagcgtcgtcgtcgacatcccgccgccgccgcagccgccgccggcgctgccggccgtggaggtggcctga</cdnaseq>

Protein Sequence

<aaseq>MVQALVFAVGIVGNILSFLVILAPVPTFYRVYKKKSTESFQSVP YAVALLSAMLWLYYALLTSDLLLLSINSIGCLVESLYLTVYLLYAPRQAMAFTLKLVC AMNLALFAAVVAALQLLVKATDRRVTLAGGIGASFALAVFVAPLTIIRQVIRTKSVEF MPFWLSFFLTLSAVVWFFYGLLMKDFFVATPNVLGLLFGLAQMVLYVVYKNPKKNSAV SEAAAAQQVEVKDQQQLQMQLQASPAVAPLDVDADADADLEAAAPATPQRPADDDAID HRSVVVDIPPPPQPPPALPAVEVA</aaseq>

Gene Sequence

<dnaseqindica>2676..3011#1274..1393#569..941#385..421#159..195#aacctgtgtcagttcaggtggtagtagcaaacacacacacagctagctagagggttgatctcctaaattgctcttggattaatactggtgtgtagagcaggagaggagatcatcctctgatcaaactctaattaagctagcatctcatatcctccaagatggttcaggcattggtctttgctgtggggatcgtaggtaacacacatgcacacactagctaattcgagattacacacttctataacaactaaccacatctagcatgcagtagtattagtggtttccacaacaagtatagtatgcatccatgcatgcatgcattatacttcaatttgccactcgaactaactaattttccttattgctggtaaatgatttttgcaggcaacatattgtcgttcttggtcatccttgcaccagtgtaagtacctactagcttcatgagcattgagctaattaagtccatgatctgttaataatttgcatgcatcttgaaaaaaaaagagagagaacatgttaagctaattaatggatatatatgatgtgaatgcaatgcaaattaatgcaggccgacgttttatcgggtgtacaagaagaagtcgacggagtcgttccagtcggtgccgtacgcggtggcgctgctgagcgcaatgctgtggctctactacgccctcctcacctccgacctcctcctcctctccatcaactccatcggctgcctcgtcgagtccctctacctcaccgtctacctcctctacgcccccaggcaggccatggccttcaccctcaagctcgtctgcgccatgaacctcgccctcttcgccgccgtcgtcgccgccctccagctcctcgtcaaggccaccgaccgccgcgtcacgctcgccggcggcatcggcgcctccttcgccctcgccgtcttcgtcgccccgctcaccatcatcgtaagcgcattaattcattcctcacatagtcacatacataatacctccgtttgttaatagaggctaccattaacttttaaacataaaatatataagatataaatcatgctttaaatatttttaagttataaaacaactcataataaaatagatgataattatataatttttaattacacaaatgatcaaatatgtatacgatattatctattaaaaaataccatagcttcatctaactatatatctgtttcattaatttgattataagataattaattaattagcatattaacaagaactaacatcaagtttgattaaatttggttttgcagaggcaagtgatcaggaccaagagcgtggagttcatgcccttctggctctccttcttcctcaccctcagcgccgtcgtctggttcttctacggcctcctcatgaaagacttcttcgttgccgtacgtcctattattttctcttttttacttgtttttgtcccgttctttctcaacatctctagctagtagcaagcaaggagtccatccagccatgcaagctactccctccgtttcacaatgtaaatcattttaagattttccgtatttatattgatgttaatgaatctagatagatatatatgtctaaatttattaacatcaatataaatgtggagaatgttagaatgacttacattataaaacggaggaagtagctagctagccagcttaagggcacccacaatggctatctataggctctctacaagagatccatgtcagcatattttactacttggaagagattaaatgaagagagagagcaaagctatctactaacctggagatagtctatagagaaaaacgaggcaatggattagacagctatagatacccatgtagacataccattgaagtagtttactattaatctagtctattgctgagatgtacatgttttatagatagcaccttactttaccattgcgggtgctctaagcaactgttaattgttgtgcttttattaggtagtaataattaattaatcatgcatggatagtgatgtgagctagtgcgtgtcgcttgtgtcaccgcccatgagccagatgttttctgccgagaggcgagagcacagcacaaaagatcaccgccactattcatcacttgtataacctatctttcgccaaagcagagcttacgtactctcgcaagcctaaaaagccctgattaaactacgtaaacgtactcatcacacacgattatatttaaccaggagatttttgttgtagccagctgcatgcatccccgcatatattccagtagtaattaattagaacaataaattaagctatatatattgattaaattacggatttgctagaaaattttcacaagtttttttccctagctcaaaacttttctcgaggcttgtgcatgaagaaaaaaattaataaaaataaaatttcacacatgttacgtgtaaaatttcaatactagttgaatgcaagttttatagtgttgtaagttatatcgtagttaccatgtactccctccgtttcataatgtaagtcattctaacattttccacattcatattaatgctaatgaatatggtaaatactagaatgacttacattgtgaaacggacggaggaagtaattacattttaattatattataacaactttttagcggtagtgttttagatactcccttaaattattaatatcgcatttatatgcagacgccgaacgtgctgggattgctgtttgggctggcccagatggtgctgtacgtggtgtacaagaaccccaagaagaactccgccgtgtcggaggcggccgccgcccagcaggttgaggtcaaggaccagcagcagctgcagatgcagctccaggcgtcgccggcggtggcgccgctcgacgtcgacgccgacgccgacgccgacttggaggcggcggcgccggccaccccgcagcggccagctgacgatgacgccatcgaccacaggagcgtcgtcgtcgacatcccgccgccgccgcagccgccgccggcgctgccggccgtggaggtggcctgatcgatcagtgagagggtgacgtattgagctgcttgtactgcacgcgtgatgaccacgactgaccagagtgacctaattactgtgtgttagctgcagctcattctagctgaatcgcatgcatcttagctaattaattattatatatatctgcatgcttaattaattaagtcgcgatatatatgtgactgtatgtatctgttgccgcgttctttattctgagttgtaggatgattagaattttgctagtgggctaagtacatgtatgcacatgatcatctatcagctgctggtcgatgcgtgtatcgccgtacgtgtatgattggggacacgtgtactgcatctgcatgctagtacgtggcatctcagtttatggtactagctagacactgtactgctctccaatcaataaaagcccatgtatcaattgtttc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0347500, RefSeq:Os03g0347500