Os03g0680566
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Annotated Information
Function
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Expression
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Evolution
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References
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Structured Information
| Gene Name |
Os03g0680566 |
|---|---|
| Description |
Reverse transcriptase, RNA-dependent DNA polymerase family protein |
| Version |
NM_001186654.1 GI:297722438 GeneID:9268515 |
| Length |
13547 bp |
| Definition |
Oryza sativa Japonica Group Os03g0680566, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:27790961..27804507 |
| Sequence Coding Region |
27790961..27791033,27791163..27791231,27791765..27791929,27792549..27792680,27793304..27793443 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:27790961..27804507 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:27790961..27804507 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggatccgccgccgccgcgggaggcgttcgtcaagtccaaattcgcctcctggctcatcgtccgcatgatcggaaaaggcgacccgagggagaacgagttgctgaacgccgtgacggagggaaatgcccgccgcctcaagaaaatggtgaatacaatgggcgagaaggacagggcaaagtttactgatatgaatatagatggcaatgggttactgcaagtggcagcacacctgggaaaaattgaggtcatcaggtacttcgtggaggagcttggctttgacgtcaacgctggttgcctctctgatggtgtgacagctttggcttctgccgcaatgtttggagaagcctatgttgtgagatatcttcttgagcatggggctgatcctaataagacagatgagacgggctctgttgctcttcattttgctgcgaaaaatgggtatgaagaagtagtccgtctcttgttatccagtggagctaggactggtatagttgttgctcatgggacaccactacatattgctgttttctataggaggattggtgtcgtcaagattttattggatcaccatgtagattcaaacaacacttcaggagtttggggtacccctattcttacggctctccgttctgctaaacatggattggatgaatctgattctttggaatgtgtaaagctgcttgttaaggctggtgctgatgtgaactatgcttgtccaaacactcccttggtggtggccacgacagctggcttaactgactgtatcaagtacttgcttgaggttcatgcagatcctaacattccagataaacagagcggacgtacacctgtagaaatctctgcaagcgttggaagaagagatcatgtggagattctatttcctttcacttcctctatcagtgcagtaacaaattggacagttgaaggaattattgctcatgggaaatcgagacgcttgactcccaagattgtagacttggattcgaagtttgaaatagtaccaaacatgggcatgtccagatacatagtcaagatcccttattttgggatggaggaagcgcgcgcggcgtgtgaggaagcggaggcgcggctgcaggcagccacgagggcggcacgtctcgtggcggcagacgctgaagcagcacgcaccgcggaggcggccaggcaggctgcagctgctgctgctactttgcgagctgaggaggagcggcgtgacttggagctggcaaacgcggcctgcgtgcgacgcgacgcagaccgggatcgacacgtaggccgacgtgatcgcgacttcagcccccattgcggaggatcagatctccaccgcgatgaggagtggcatgatctatggcgcgatccttggatcgaccgcgctctggaggcccagcgactctgggagcaggcagcggcgattgaggcacaactggacttcgaccgggagcagggtggacgggacattggcgcacgaagccctcgcaggcagcgcgcctccccttcctcggaccggcaccgtggtcgccgtggacgctccggctctcctcccgttgtgcagaccatcgtcaaggataagctgcgtcaggattgggagaacctggccttcaagccgggtgaggacatcgatgacttcgttctccgcctcaactccttgcagcagcggttggcgcagctcggcgacaccaccattgacgaggagagagccgtggagaagctccttcgcgtcgtccccgagaagtacacgcagctggctctgtcgatcgagacgctgctggacttcaccgagctcacaatcgaagaggtgatgggtcgcctcaaggccgtcgacaaccgcaagcagctacctccctcagagccgatcaccattggtggcaagcttttcttcaccaaggagcagtggctcgcccgccagcaggagtggaagaagggggaggccacaggctcttcggcttcgggatcgtcgagcagccgcaagcgtcgaccacgcaagtgggagaaggcgcgtagtggcgctcttggcgacgccaatggcgagcacaagggcagccgcgacgacacctgccacaactgcgggaagaccggctactgggccaaggactgccggcaggcgaagcacggcggtcaagcacacgtcgctcaagcacaggagggtgacgagcatcgagccgcacttcactcccgcatcggacgctaccgcgcccctccacctcgacgagccgcggcccacgtcttcctcagcaacggatcatgcggcgacaagatcgacggatggtgcctcgacaccggtgccactcaccacatgaccgggcggcgggaattcttctccgagcttgactccagcgttcaaggctccgtcaagtttggggacgcctccaccgtggtgatcaagggcgtcggctccatcctcttcactgccaagaccggcgagcaccggctgctcaccggtgtctactacatccccgcgctaaggaactccatcatcagtttgggacaactggatgagaacggctcgcgcgtggagatagaggacggggtcttgcgggtttgggatcgccatcgtcgccttctcgtcaaggtgaacaggggcgccaatcgcctctatgttctccatgtacaggtagcgcagcctgtgtgccttgcagcccgccgcgacgatgatgcatggcggtggcacgagcgctttgggcacctcaacttcggagccttgaagcagctcggcaacaaggagatggtgcagggcatgccgcgagtcgagcacgtggagcagttttgcgacacctgcgtcctcaccaagcagcggcgactcccctttccccgccaagcaagtttccgcgccgaggagaagctggagctcgtgcacggtgacctctgcggccctgtgactccggccacacctggaggccggcgcttcttcctgctgctcgtcgacgacgtgtcccgctacatgtgggtggtcctgcacgactccaaggcagctgctgcagacgccatcaagcaccatcaagttgctgcggagaaggagtgcggccgcaagcttcgggtgctacgcaccaacaacggtggcgagttcacggcggctgagttcgcggcgtactgcgccgacgaggggatccagcgccacttctccgcgccatacaccccgcagcagaacggcgttgtggagcgccgcaaccagacagtggtggccactgcccgcgccctcctcaagcaaagagggatgccggcaatctactgggaggaggcggtgatgactgccgtccatctcctcaaccgcttgcccaccaaggcccttgacggcaagacgccgtacgaggcctggcacgggcgcaagccggtggtgagccacctccgcgtctttggctgtctcgccttcgccaaggagctcaaccacgtcggcaagctcgacgaccggagctcgccgggagtcttcatcggctatgcggagggcgtcaaggcctaccgcatcctcgaccctgcgacgcagcgtgtccgcatttctcgggacgtcgtgttcgacgaagggcgaggttgggcttgggacaaggcggtggacgacggctcgacttcgactctccgagacttcgtcgtcgactacgtccactttgggggagccgggggagctagcagctcatcttcaccgagctcgtccacctcggcacccggctcgccatcagctccggcgagtcctccaccacctacaccaccagcgactcctccatcaccggctacgccctgctctcctacaccagcgcccacaccaccggtggagttcgccactccgttgtccaacgacgaggatcgtgttgatgcgtaccacgacgacgagcctctgcgctaccacaccgtggacaacatcttcggtgatcagcccgtccttggactggcgacgcacgacttcgaggccgagctgcacctggcgcatgaggacggcgagccctgctccttcgcagaggcgaatggagatgtggcatggcgcactgcgatgcagcacgagatggacgcggtcgagcgaaaccggacgtgggtgctggcagatcttcctgtcggccaccgcgccatcacccttaagtgggtctacaagctcaagaaggatgaggccggggcgctggactccactctcaagcaaatggggttccagcagagctctcacgaagctgctgtctaccggcggggcaaggacggcaatgccctgttggtaggcgtctacgtcgacgacttggtgatcaccggcaccaaggaggctgaggtggaggcgttcaaggaggagatgaaggcgactttccagatgagcgatttgggccttctctctttctacctggggatcgaggtccaccaggacagctctggcatctctcttcgccagaccgcctacgccaagcgcatcgtcgagttgggcgggctcaccggctgcaacctagcctacactcccatggaggaaaggttgaagctgagccgcgacagcacggctgaggaggttgacgccacgccgtaccaacgtattcgaccaacgacagagcaccagcaggctgtcaagaggatcctccgttacgtcgagggcaccaccaactacggcttgcactacccgaggtgtcccggtgcgcagcacttcattgggtacagcgacagtgacctcgccggcgacagcgacacgagcaagagcaccagtggcatgctgttcttcctcagcaagtgcctgatcagctggcagtcggtcaagcaacaagtggtggccctgtccagttgcgaggcggagtacatcgctaccacaaccgcctcaactcaagctctctggttggttcggctgctgggagatctcttgggaagagacgctgaagcagtggagctcagggtggacagcaagtctgctttggccttggcaaagaatcccgtcttccatgagcgcagcaagcacatccgcatcaagtatcatttcattcggagctgcttggaggagaggagcatcaaggccagctacattaacacccaggatcagctcgtcgatcttctcaccaagtccctcgggcgggtcaagttccaggagtttcgcgccaggattggaatggacgagtcatgtggcaaggtcaatgacagaaaggctgagctaaaatcacatggagaaaaagcagttaagagaaatgactaccttgctgcgtcaaagatctactccgaggcacttgagctagattattttgatgcaaccttgtattcaaacagaagcctttgcaacctacaaattggagaagcacaaaaggctttgcttgacgcagatagatgtgtagaactgcggcctaagtgggtgaaaggtcactaccgggaaggagctgctttgatggtgctaaaggagcacaagaaagcatttgaggcattcttgaacgcgctgaaactggatcctgctaatgccgagattgagaaacagaaggtggcgattgccccggacgcactacgcccatctctcggacgcgatacaccaacgctcgcgtcgcgacgccttctcctctcgaggcgaaaaccctag</cdnaseq> |
| Protein Sequence |
<aaseq>MDPPPPREAFVKSKFASWLIVRMIGKGDPRENELLNAVTEGNAR RLKKMVNTMGEKDRAKFTDMNIDGNGLLQVAAHLGKIEVIRYFVEELGFDVNAGCLSD GVTALASAAMFGEAYVVRYLLEHGADPNKTDETGSVALHFAAKNGYEEVVRLLLSSGA RTGIVVAHGTPLHIAVFYRRIGVVKILLDHHVDSNNTSGVWGTPILTALRSAKHGLDE SDSLECVKLLVKAGADVNYACPNTPLVVATTAGLTDCIKYLLEVHADPNIPDKQSGRT PVEISASVGRRDHVEILFPFTSSISAVTNWTVEGIIAHGKSRRLTPKIVDLDSKFEIV PNMGMSRYIVKIPYFGMEEARAACEEAEARLQAATRAARLVAADAEAARTAEAARQAA AAAATLRAEEERRDLELANAACVRRDADRDRHVGRRDRDFSPHCGGSDLHRDEEWHDL WRDPWIDRALEAQRLWEQAAAIEAQLDFDREQGGRDIGARSPRRQRASPSSDRHRGRR GRSGSPPVVQTIVKDKLRQDWENLAFKPGEDIDDFVLRLNSLQQRLAQLGDTTIDEER AVEKLLRVVPEKYTQLALSIETLLDFTELTIEEVMGRLKAVDNRKQLPPSEPITIGGK LFFTKEQWLARQQEWKKGEATGSSASGSSSSRKRRPRKWEKARSGALGDANGEHKGSR DDTCHNCGKTGYWAKDCRQAKHGGQAHVAQAQEGDEHRAALHSRIGRYRAPPPRRAAA HVFLSNGSCGDKIDGWCLDTGATHHMTGRREFFSELDSSVQGSVKFGDASTVVIKGVG SILFTAKTGEHRLLTGVYYIPALRNSIISLGQLDENGSRVEIEDGVLRVWDRHRRLLV KVNRGANRLYVLHVQVAQPVCLAARRDDDAWRWHERFGHLNFGALKQLGNKEMVQGMP RVEHVEQFCDTCVLTKQRRLPFPRQASFRAEEKLELVHGDLCGPVTPATPGGRRFFLL LVDDVSRYMWVVLHDSKAAAADAIKHHQVAAEKECGRKLRVLRTNNGGEFTAAEFAAY CADEGIQRHFSAPYTPQQNGVVERRNQTVVATARALLKQRGMPAIYWEEAVMTAVHLL NRLPTKALDGKTPYEAWHGRKPVVSHLRVFGCLAFAKELNHVGKLDDRSSPGVFIGYA EGVKAYRILDPATQRVRISRDVVFDEGRGWAWDKAVDDGSTSTLRDFVVDYVHFGGAG GASSSSSPSSSTSAPGSPSAPASPPPPTPPATPPSPATPCSPTPAPTPPVEFATPLSN DEDRVDAYHDDEPLRYHTVDNIFGDQPVLGLATHDFEAELHLAHEDGEPCSFAEANGD VAWRTAMQHEMDAVERNRTWVLADLPVGHRAITLKWVYKLKKDEAGALDSTLKQMGFQ QSSHEAAVYRRGKDGNALLVGVYVDDLVITGTKEAEVEAFKEEMKATFQMSDLGLLSF YLGIEVHQDSSGISLRQTAYAKRIVELGGLTGCNLAYTPMEERLKLSRDSTAEEVDAT PYQRIRPTTEHQQAVKRILRYVEGTTNYGLHYPRCPGAQHFIGYSDSDLAGDSDTSKS TSGMLFFLSKCLISWQSVKQQVVALSSCEAEYIATTTASTQALWLVRLLGDLLGRDAE AVELRVDSKSALALAKNPVFHERSKHIRIKYHFIRSCLEERSIKASYINTQDQLVDLL TKSLGRVKFQEFRARIGMDESCGKVNDRKAELKSHGEKAVKRNDYLAASKIYSEALEL DYFDATLYSNRSLCNLQIGEAQKALLDADRCVELRPKWVKGHYREGAALMVLKEHKKA FEAFLNALKLDPANAEIEKQKVAIAPDALRPSLGRDTPTLASRRLLLSRRKP</aaseq> |
| Gene Sequence |
<dnaseqindica>1..73#203..271#805..969#1589..1720#2344..2483#2903..3013#3301..3426#3859..4011#4368..4454#4905..5417#5691..6275#6302..8248#8558..8953#9030..9590#10444..10551#11771..11941#12030..12101#13446..13547#atggatccgccgccgccgcgggaggcgttcgtcaagtccaaattcgcctcctggctcatcgtccgcatgatcggttagttcccccgcctcttcaaaccctagtttgccttgccatgcctgcttaattggttagtacgagtactactttaatggcgctgttttttttttttgattcggtgttcttcgtctcctcctcctccaggaaaaggcgacccgagggagaacgagttgctgaacgccgtgacggagggaaatgcccgccgcctcaagagtgagtgctcctccgtcctcctcgtctccgacgccgcgggcgggcgggcttgatttcttcttgtcgtgcttgtgtctgcgttgcgccgtgcgtacgccttttttttttttgggggtggggggtgggggggctcttgctgcttgcgtgcgtgcaatgtttggattggtacacgtacgatttgtcgatttcttttttcttttgcgagcatcgatgctctaatgaattaggatcatgttgttttctacaattctactcatgtctgatgggtgactattttgttgctagcatcgcgattggattccgccatgttttacatgctgctggaagtgtgctccacgccttcaccttgtgattttttttctcatgctgtacaattgtgcctagccagatttttgtttttttgtgattcacgatgttactttagtaattgtgaaccagacgcagtaatgtagaattgcatttttttttggttgcacaatcttttatcatatcatgattatgatttctccccttcaaaattttgggtgttgaagaaatggtgaatacaatgggcgagaaggacagggcaaagtttactgatatgaatatagatggcaatgggttactgcaagtggcagcacacctgggaaaaattgaggtcatcaggtacttcgtggaggagcttggctttgacgtcaacgctggttgcctctctgatggtgcgtgcatctctttcactagatcaaatgcatttttttttgggaatggtttattagtttattcaacagattatgtcaagcaacctgttgtgtgacacaacatttagttcacacaatgctacattcttttatgttataaatagatgcagcatgagaaagttgggctatttcaataagcaactttcaataaatagatgctttgattgattaaaaaaatgcattttggatttgaggttattatgaactttgtgtggtactttcaagatccagttccatacataacataaggtaccatttaggttccatatatagcattcctaaattctattagaacctagctggggcatatagactttcctaaaatactaaaaaatttaaatgcacaccagtgcatgcatacacaccgtgcaatgtgatattctgaggccatccaatagtgatgtgttcttttagaaatcatgcaaactgtgtattatttaacatgctactaggaattcttcctatggcaaatgcatgtatggtgtaaaattttttgatgagcttgaggactgtaataatttagaggagagccaaattgttggtaatctcacaaggtacttgttttcattgttgttgacaggtgtgacagctttggcttctgccgcaatgtttggagaagcctatgttgtgagatatcttcttgagcatggggctgatcctaataagacagatgagacgggctctgttgctcttcattttgctgcgaaaaatggtctttctcttcacgtctactattattattttttcattttgtgactacaaatgtcttgttgaatatgtactgatgtgttcaaattttaaccatcaaatcaagaaccattggacttaattgtgaaaaaaaaagtattcagtaattcattgttgtgactttttttggggtagtttctgcaggttggattagtgtccctatattccttttatgcttgactagtttgttgtagccacatggcgggcaatctacaaaccatcctgctatttgaagtattcctgcctaaaatatcactgtcattattctttgcaaagttatgttagctatatttgttttactatttttcaatgcttcctcactagcgatcattttcttgatgtcctgtgtagtattataacaacacgcagttaattgttgagctaagcacctcaccaagagaccgataactccttatttgtttttagttatggaaagatgggtggttggaaggatctttttagcagaaaagctacttttatctaactatgtagtgttctaataatgcttgttctttgttatgatagtaccatttctttttctcgaacaagcaggttatgacagtgccttttttttttcattttgtttagggtatgaagaagtagtccgtctcttgttatccagtggagctaggactggtatagttgttgctcatgggacaccactacatattgctgttttctataggaggattggtgtcgtcaagattttattggatcaccatgtagatgtaataagtaaatttgttgtttttgtcatttgcattagtcttatatcttgatactatctgagtttttatgtgcttgtgttcatttagtatttcacgccttcatagtttactggctcttaatatattttgtgcttgataagtccaataaatctttcataatattgttttaggcacttacggttgaatatttaattgttacatgtcctggcagtgtttccaagcactgggtaacgtattagtcctaaacagtttaattttaacaactacatacaagattgttgcaaacacatggaaatgcagagaaatatatgggtgtttatactgtttctatttattattccgcagtcacatttttataacatgtgagttatcttacttgtgtgtagggaataattttgtttcttgcattaaatttgtagtcaaacaacacttcaggagtttggggtacccctattcttacggctctccgttctgctaaacatggattggatgaatctgattctttggaatgtgtaaagctgcttgttaaggtctggtaactgcttcacctttgtttcttcatattatcttctttataagttgagaatctattaattgctattgttatccatagtgcttgtattcatctctaagggctgtgggcccaaatgtatacatgtacatgtaggaaaacaaggaaacccttcgtacaaaggaaaatacagaacatatatgtttatttaacaatatatagatttctgtacgaagcacttctatattatgcatattattgtattaattgaattggctggtcctgatgtgaattatgccaacctaggctggtgctgatgtgaactatgcttgtccaaacactcccttggtggtggccacgacagctggcttaactgactgtatcaagtacttgcttgaggttcatgcagatcctaacattccagataaacaggtgtgctttttaggccctgttcttctttctagagttgttgttcttcttagtgcatgatctaatacatgtcactttgagtactaaattattactctattggttgtacaattatttttttctgttctcgggtatgttaagtatgtggtcccgacatggtgttccatgcgtacgcctgtgcatcacaagtgcacaccatgtatggttcaacctgaattacttgttctaattcagttgactcttttattattggcttattgccttttgaatttaagtcatttagcacttcaaataagttaagcatttctgttcatgaaagtattcagggggaaaaccacctccacaaggttcttgcttatttaataatcacgctcttgattcttatttttttgttaagttatcgtacaaaggttatcttcttctgttactttgcagagcggacgtacacctgtagaaatctctgcaagcgttggaagaagagatcatgtggagattctatttcctttcacttcctctatcagtgcagtaacaaattggacagttgaaggaattattgctcatgggaaatcgagacgcttgactcccaaggtttggcttgaactaaaagtttttggaccgttctatgcttgtttaccttgatgatttaaactatggctgtgtttagttcagcgcaaagtttggattttggttgaaattggagatgatgtgactgaaaagttgtgtgtatgacaggttgacgtgatagaaaaggactgaagtttggatccaaactttgaatctaaacacagcctatgtgtatatctctgatttgtcagaagtcattcttgttttctcttattcattttcactttcttagttccaaattctgaagataaaacgggtcactcgatagttctcgtcatgatcatttgaatccctattatatgttagctttcatcatgcagattgtagacttggattcgaagtttgaaatagtaccaaacatgggcatgtccagatacatagtcaagatcccttattttgggatggaggtagtagcttataatgacagattaagtcttgtttttactatatgcttttaacatctatttttggaataatagttggctgccttaggatgtaagccactagtagttttccttaggatgtaagccactcctagtttcttaggatgtaagccactagcctatatatatgtatccaaccagccatagttgattgagtggagaatagaaattaaactagccccaaaacctgtgttccttttgctaacaattggtatcatagcaaggtttatctgagttccatcgactccccatccaaaaatgtctctccactccattcgttccccctctctcttgtccca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