Os04g0656100

From RiceWiki
Revision as of 20:01, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0656100

Description

Similar to Plasma membrane H+-ATPase-like protein (Fragment)

Version

NM_001060653.1 GI:115461035 GeneID:4337257

Length

7107 bp

Definition

Oryza sativa Japonica Group Os04g0656100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:33856278..33863384

Sequence Coding Region

33856583..33856624,33858240..33858359,33858476..33858712,33859490..33860374,33860469..33860573
,33860656..33860800,33860882..33861046,33861127..33861365,33861460..33861492
,33861576..33861657,33861753..33861913,33862018..33862191,33862285..33862467
,33862568..33862755,33862891..33862987

Expression

GEO Profiles:Os04g0656100

Genome Context

<gbrowseImage1> name=NC_008397:33856278..33863384 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:33856278..33863384 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtgggctcgaggagatcaagaatgaggccgttgatctggagaacataccgatcgaggaggtgttcgagcagctgaaatgtacgcgcgaggggctctcctccgaggaggggaaccggcgtatcgagatgttcggccccaacaagctcgaggagaagaaggagagcaagatactcaagttcttggggttcatgtggaacccgctgtcgtgggtcatggagatggccgccatcatggccatcgcgctggccaacggcggcggcaagccaccggactgggaggacttcgtcggtatcattgtcctgctggttatcaactccaccatctccttcatcgaagagaacaacgccggcaacgccgctgctgctctcatggccaaccttgcacccaagaccaaggtgctgagggatggccgatggggcgagcaggaggcagcaatcttggttcccggtgacattatcagcatcaagctcggtgacatcgtccctgctgatgctcgtctccttgagggtgatccccttaagattgaccagtctgcacttactggggagtcccttccagtgaccaagaaccctggtgatgaggtcttctctggctcgacctgcaagcagggtgagattgaggccgtggtcattgccactggagtgcacaccttcttcggcaaggcggcgcatcttgttgacagcaccaaccaagttggtcacttccagacggtgctcactgcgatcgggaacttctgtatctgctcgattgcggttggtatcgtgatcgagatcatcgttatgttcccgatccagcaccgtgcctaccgcagtggcattgagaacctgttggtcctcttgatcggtggtatcccaattgccatgcctaccgtgctctcggtcaccatggccattggttcccacaagttgtcccagcagggtgctatcaccaagaggatgactgccatcgaggagatggctggcatggatgttctgtgcagtgacaagaccggaaccctcacccttaacaagttgagcgtcgacaagaacctcgttgaagtgttcactaaaggtgttgacaaggaccatgttttgttgctggctgcaagggcatctaggacagaaaaccaagatgccatcgatgctgccatggttggtatgcttgctgatcccaaggaggcaagagccggtatcagggaagtgcacttcttgcccttcaacccagttgacaagaggactgctctaacatacatcgatgccgatggtaactggcaccgtgccagcaagggtgctcctgagcagatcctgaccctgtgcaactgcaaggaggatgtaaagaggaaggtgcatgctgtgattgacaagtatgctgagcgtgggcttcgttctcttgctgttgcaagacaggaagtacctgagaagtcgaaggagtctgctggtggaccatggcaattcgttggtctgctgcccctgtttgatcccccgaggcacgacagtgctgaaactatccggaaggctctccatcttggtgttaatgttaagatgatcactggtgaccagcttgctattggtaaggagactggtaggaggcttggaatgggtacaaacatgtatccttcatccgcattgctcggacaaaacaaggacgcttcacttgaggcacttcccgtggatgagctcattgagaaggctgatggttttgccggagtcttccctgagcacaaatatgagatcgtgaagaggttgcaagagaagaagcacatcgtcggtatgaccggagatggtgtcaatgatgcccctgctcttaagaaggccgacattggtattgctgttgctgatgctacagatgctgcaagaagtgcttccgacattgtgctcactgagccaggtcttagtgtcattatcagcgctgtcctcactagcagatgcatcttccagaggatgaagaactataccatttatgcagtttccatcaccatccgtatagtgcttggatttttgcttattgctctgatctggaaatacgacttctcacccttcatggtccttatcattgccatcctgaatgacggtactatcatgacgatctcgaaggacagagttaagccttctcccttgccagacagctggaagctgaaggaaatcttcgctaccggtattgtgcttggaagctaccttgctctgatgaccgttattttcttctgggccatgcacaagacagactttttcacggacaaattcggtgtcagatcaatcaggaacagtgaacatgagatgatgtctgcactgtacctccaagtcagtattgtgagtcaggccctcatcttcgtcacccgttctcgcagctggtccttcatcgaacgccctggtcttctcttggtcactgcattcatgcttgcacaactggttgcgacattcctcgctgtctatgccaactggggctttgccaggatcaagggcattggctggggctgggctggcgttatctggctttacagcattgtgttctacttccctcttgacatcttcaagttcttcatccgctttgtgctgagtggaagggcctgggacaacctccttgagaacaagattgcattcaccaccaagaaggattacggtagggaggagagggaggcacaatgggccaccgcacaaagaacacttcacggccttcagccaccggaggtcgcctccaacacgctcttcaacgacaagagcagctaccgcgagctctctgagatcgctgagcaagccaagagacgagctgagatcgcgaggctgagagagctgaacactctcaagggccacgtcgaatcggtggtgaagctgaaggggctggacatcgacacgatccagcagaactacacagtgtga</cdnaseq>

Protein Sequence

<aaseq>MGGLEEIKNEAVDLENIPIEEVFEQLKCTREGLSSEEGNRRIEM FGPNKLEEKKESKILKFLGFMWNPLSWVMEMAAIMAIALANGGGKPPDWEDFVGIIVL LVINSTISFIEENNAGNAAAALMANLAPKTKVLRDGRWGEQEAAILVPGDIISIKLGD IVPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHT FFGKAAHLVDSTNQVGHFQTVLTAIGNFCICSIAVGIVIEIIVMFPIQHRAYRSGIEN LLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTL TLNKLSVDKNLVEVFTKGVDKDHVLLLAARASRTENQDAIDAAMVGMLADPKEARAGI REVHFLPFNPVDKRTALTYIDADGNWHRASKGAPEQILTLCNCKEDVKRKVHAVIDKY AERGLRSLAVARQEVPEKSKESAGGPWQFVGLLPLFDPPRHDSAETIRKALHLGVNVK MITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDASLEALPVDELIEKADGFAGVFP EHKYEIVKRLQEKKHIVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPG LSVIISAVLTSRCIFQRMKNYTIYAVSITIRIVLGFLLIALIWKYDFSPFMVLIIAIL NDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGSYLALMTVIFFWAMHKTDFFTDK FGVRSIRNSEHEMMSALYLQVSIVSQALIFVTRSRSWSFIERPGLLLVTAFMLAQLVA TFLAVYANWGFARIKGIGWGWAGVIWLYSIVFYFPLDIFKFFIRFVLSGRAWDNLLEN KIAFTTKKDYGREEREAQWATAQRTLHGLQPPEVASNTLFNDKSSYRELSEIAEQAKR RAEIARLRELNTLKGHVESVVKLKGLDIDTIQQNYTV</aaseq>

Gene Sequence

<dnaseqindica>306..347#1963..2082#2199..2435#3213..4097#4192..4296#4379..4523#4605..4769#4850..5088#5183..5215#5299..5380#5476..5636#5741..5914#6008..6190#6291..6478#6614..6710#ccaccgacacgtgggccccacgacccagccagccagagtcccagaagttaacgggggcacgcgaacagagaggggggccccgcgcggcgaggtggggaccagtgcgggtatgaagcggggaggcgctatatagagcgcacccatcctcctcccccttcctccctctcctctccactactaataccaccaccgccgcgccggaggtggaagacggacggggtagagttggggtctcgcggtgagccgattcctctctagtggtcgcgcctggtgtgttcgccgacgacgccggcgtcgcgtcagccatgggtgggctcgaggagatcaagaatgaggccgttgatctggtgagaaaatcactcgccgccaccagctacctactacttcttcttcctcgcttcctccctctcgcgtgttgggttgcttaggctttagctctagctttagttcttaccatttttgactggcgatagaaatagtctgagaattgaaaattaatgataccggctagctggagctgagtagatttctgatacgcttaataaatgaaaaggaaaattttccatgtaaagatgagcacggatcgttcgtcgtcggcggcggccttcacgtcacgctctctttctcaacgcggcttttcataacagaaggggccagttgtccatggccgcctgccatgttcttctcttattcttcttctctctcaccctgttcgctcctctgtactgttttgctgctgttcctctcaccatcatcaatttgttcatctgtctccggctcctccttttttttggttgaaatgaaactttttgaaagatcctgctcacatgcgtgtttaatctgtcatgtaggagtacactataccactatggtcacttctccaccaaactatagtataaaaaaaattgaatctcagatctacgcgtaattaaatgcccacctccagttattagtattactcttgcctctactttcctttttttttagttcttcatttatacaaagaagcagtgaacaaatatactcaaatagttcttcagcttcgcaagtactcctactccataaaactatttttcagcttcacacgtaaaattaaaattattcatgagcttcatacgaatttgcatgtacgtaaagtcaaaagtcacttgagcacgggcgcgagctaatcacgcagcggagattagtggctaaccaccataaaggcaagctaaacacacagtggaatccgtgcgtgcctagctgagctgcggccttttttttggtttgctttgttttttttttgttcttttttgttgaccaagcggacagcccaatccaagagcacaacgtataccagccgctgctcgctttatcttttttttaaaaaaaataaaaatagattaaaaatcagtttaattttgggctggttttgttcccttcggctcacgcgacgagaaaacgaaaccgcatcttcccggcacgcatctcaaggacgacacgaggggggccacgggaagtacgcgcgcctcctctgactgccgctgagccgtctgatctccatctgacggccgtactttctccaatcattggccgggcactgcaacccccctgttgccccttggactcttcctcctccgtgtgttcctagtagatcctgaccgcttggctggtaggcgctgacggcgtgggcccacacgcaccacctgggagatattttatctgtcaatgacaggtcgggcccatccaccaatagtaatagttttttgataaggctgtaaattgttcaacacgcgaatctaattataggtcgaataacgagatagtgataattaaggatttatcgctgtactcgcatatcatagacccgactgataaattcttaattgtcacgtcttactcgaataactgggtaacccgagttcttatttctcactctgttgttgctgactagtgtggttgtggcttttgttgttgttgcaggagaacataccgatcgaggaggtgttcgagcagctgaaatgtacgcgcgaggggctctcctccgaggaggggaaccggcgtatcgagatgttcggccccaacaagctcgaggagaagaaggtgcgtgctatgctttgtcaaagccttttgcattctcttgttgcgtgtggttttctttcatttctgacgcgaatcgctcatctttgttgcgtctttttgtttgtgtgcttgtgcaggagagcaagatactcaagttcttggggttcatgtggaacccgctgtcgtgggtcatggagatggccgccatcatggccatcgcgctggccaacggcggcggcaagccaccggactgggaggacttcgtcggtatcattgtcctgctggttatcaactccaccatctccttcatcgaagagaacaacgccggcaacgccgctgctgctctcatggccaaccttgcacccaagaccaaggtgagctcaagaaacactggataggagtactaactaatgcactttgaactggaaaccgaccttaattattccgttgtaccacacaaggctttgatttttgtattgactagttgtcataatagtattatacagtagtggaaggaagaatctctatgtgcgtacttttcggacgggcactttcaattagagtgcctagaaactgagctctgaattgtccagtggatgggtgggcatatattccattattgcaagaaaataaagatagggacccacctcttggacagtactgttcatttggcgtaaataatagcctaggtgttctgcaattgcggctaatttggatattgttagcaaaacaacgtggtctaatttttctgctctggagctggaagtcaagtttctgtctttcatacgtatgatagattgataggtctatgatatcaggaagtatcctcttggacatgaattatttcaccatcacaattctttaactgctacggagctcatcctcagttagctagtcgtccctttcattgtatttttatttaataggataaggggagaaaaatgtggcagcgcacgcacgcacatcgttgtcacgtggaatttttcttttttcgtgcaacttgtcaactcaaatcagccgaaatgaaatgtgttaggtactaggatgtggtcatgtagcagttggcactttggaataagttgcaataatagtgaacactgattacgtaatcttgaatttttcttttaaccaaacttgtttgcttattccaggtgctgagggatggccgatggggcgagcaggaggcagcaatcttggttcccggtgacattatcagcatcaagctcggtgacatcgtccctgctgatgctcgtctccttgagggtgatccccttaagattgaccagtctgcacttactggggagtcccttccagtgaccaagaaccctggtgatgaggtcttctctggctcgacctgcaagcagggtgagattgaggccgtggtcattgccactggagtgcacaccttcttcggcaaggcggcgcatcttgttgacagcaccaaccaagttggtcacttccagacggtgctcactgcgatcgggaacttctgtatctgctcgattgcggttggtatcgtgatcgagatcatcgttatgttcccgatccagcaccgtgcctaccgcagtggcattgagaacctgttggtcctcttgatcggtggtatcccaattgccatgcctaccgtgctctcggtcaccatggccattggttcccacaagttgtcccagcagggtgctatcaccaagaggatgactgccatcgaggagatggctggcatggatgttctgtgcagtgacaagaccggaaccctcacccttaacaagttgagcgtcgacaagaacctcgttgaagtgttcactaaaggtgttgacaaggaccatgttttgttgctggctgcaagggcatctaggacagaaaaccaagatgccatcgatgctgccatggttggtatgcttgctgatcccaaggaggcaagagccggtatcagggaagtgcacttcttgcccttcaacccagttgacaagaggactgctctaacatacatcgatgccgatggtaactggcaccgtgccagcaagggtgctcctgagcaggtgagaaagattgacccttgtttcacttttttttttttgctaatttctttacttataatacgtgactgacatttttttggttgaaattggacagatcctgaccctgtgcaactgcaaggaggatgtaaagaggaaggtgcatgctgtgattgacaagtatgctgagcgtgggcttcgttctcttgctgttgcaagacaggtatgatggctgccttactgaatgatctatcacctttttagtgattagggaaccatattctcataccaatatgatgtcgcaggaagtacctgagaagtcgaaggagtctgctggtggaccatggcaattcgttggtctgctgcccctgtttgatcccccgaggcacgacagtgctgaaactatccggaaggctctccatcttggtgttaatgttaagatgatcactggtatgtacaaatattataaaaacagaaagcagtataatagaattttgcaagagctaatggttggattttaatgtacatcaggtgaccagcttgctattggtaaggagactggtaggaggcttggaatgggtacaaacatgtatccttcatccgcattgctcggacaaaacaaggacgcttcacttgaggcacttcccgtggatgagctcattgagaaggctgatggttttgccggagtcttccctggtatggcttggatcgatgcagacttacctgcttgtttgctttcaatgtttgcattcctcaatgtgtttcttgttatgcagagcacaaatatgagatcgtgaagaggttgcaagagaagaagcacatcgtcggtatgaccggagatggtgtcaatgatgcccctgctcttaagaaggccgacattggtattgctgttgctgatgctacagatgctgcaagaagtgcttccgacattgtgctcactgagccaggtcttagtgtcattatcagcgctgtcctcactagcagatgcatcttccagaggatgaagaactataccgtaagttcttcctttgcaaataacttgtgttctctgtaaaacatatgatcacatcgcattctaactttgtattattttgtctcgtgtacatcagatttatgcagtttccatcaccatccgtatagtggtaagtaccatttcgtacataaaagatggaatataagctcttttctcgattttccaaactctaatatcaattttattttccagcttggatttttgcttattgctctgatctggaaatacgacttctcacccttcatggtccttatcattgccatcctgaatgacggtatgcattcctattgcccagataaattactgataactattccctccatgtacattcctagtgtaaggatcagttctcacgcaatatttttgcaggtactatcatgacgatctcgaaggacagagttaagccttctcccttgccagacagctggaagctgaaggaaatcttcgctaccggtattgtgcttggaagctaccttgctctgatgaccgttattttcttctgggccatgcacaagacagactttttcacggtatgctctcaccttaccctatctgtagtctgtccactacacttctctctcattatgtatgcttttgcgtgaagttttgttctcactaaagtgcttttgttcaggacaaattcggtgtcagatcaatcaggaacagtgaacatgagatgatgtctgcactgtacctccaagtcagtattgtgagtcaggccctcatcttcgtcacccgttctcgcagctggtccttcatcgaacgccctggtcttctcttggtcactgcattcatgcttgcacaactggtatgtacaagacagtaactactcaacaatcgagctacgtcataacaacgtcacggcaaatcatgcctaatcctaaccttactgtttctgtaggttgcgacattcctcgctgtctatgccaactggggctttgccaggatcaagggcattggctggggctgggctggcgttatctggctttacagcattgtgttctacttccctcttgacatcttcaagttcttcatccgctttgtgctgagtggaagggcctgggacaacctccttgagaacaaggtacatatccagatctttcagttgtcagaaatgtacatatatggttgtctgctccattttttgtttcagctggctgatgatccgaaccttgtatttgcagattgcattcaccaccaagaaggattacggtagggaggagagggaggcacaatgggccaccgcacaaagaacacttcacggccttcagccaccggaggtcgcctccaacacgctcttcaacgacaagagcagctaccgcgagctctctgagatcgctgagcaagccaagagacgagctgagatcgcgaggtacattgctcacttccaacactgataaaatccatcaagtgcctaaccacttatgttaattaattaattactactacatcaatgagaaaatgttgctgaaaactaaaacacttgttctggatcataatctttcaggctgagagagctgaacactctcaagggccacgtcgaatcggtggtgaagctgaaggggctggacatcgacacgatccagcagaactacacagtgtgaggaaccccctcggcattcaacgagagatcgtcatcagcgctggagcgggaattgcaaacggcgctctggttaaaggaaattttcgatgaatgattggaagaacaaaaaacaaaaaaacatggctgatctgaacagccctagttgtaaagtgctaccaaatatatggtccggtttccctcttctagagaggttttacgttctagtggagtaccgtacgtacgtgttggagtacgacgacgtgttgtgatcgtttttggtctttttttactcttttccccctaactagcggtcttcttgcggaatgcaagatggagaaataatggatgaaaaattttctgccacgttaattctcactttggcaaatgggtctgcttcaattacttcttaattactctgc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0656100, RefSeq:Os04g0656100