Os05g0194600

From RiceWiki
Revision as of 20:05, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0194600

Description

Peptidase M22, O-sialoglycoprotein endopeptidase family protein

Version

NM_001061393.1 GI:115462516 GeneID:4338033

Length

5237 bp

Definition

Oryza sativa Japonica Group Os05g0194600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:5773977..5779213

Sequence Coding Region

5774805..5775206,5775345..5775500,5778587..5779171

Expression

GEO Profiles:Os05g0194600

Genome Context

<gbrowseImage1> name=NC_008398:5773977..5779213 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:5773977..5779213 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacgtcatcgccggcggcgaggcgccggccgccgggtccgctggcgctggggctggagtcgtcggcgaacaagatcggcatcggcgtcgtctccctctcgggggagatcctctccaacccgcgtcacacctacgtcaccccgccggggcacggcttcctgccgcgggagacggcgcaccaccacctcgcccacctcctcccgctcctccgcgcggcgctgggcgaggccggggtgacccccgccgacctcgcctgcgtgtgctacaccaaggggcccgggatgggcgcgccgctccaggtcgccgccgccgcggcgcgcgcgctctcgctgctctgggggaagccgctcgtcggcgtgaaccactgcgtcgcgcacgtcgagatgggccgcgcggtcaccggcgccgtcgaccccgtcgtgctctacgtctccggcgggaacacgcaggtcatcgcgtacagcgaagggaggtacaggatcttcggcgagaccatcgacatcgcggtggggaactgcctcgatcgctttgccagggtgcttgagctgtccaatgatcctagccctgggtataacatcgagcagcttgcgaagaagggagagaagttcattgatctcccttatgttgtaaagggtatggacgtgtcatttagtggcatactgagcttcattgaagctacagcaattgagaagcttaaaaataatgagtgcacgcctgcagatctatgctactcattgcaggaaactctctttgctatgcttgttgaaatcactgagcgtgccatggcacattgtgattcgaaggatgttcttattgttggtggtgttgggtgcaatgaacgtttgcaagagatgatgaggataatgtgttcagaaagagggggtaggctgttcgcaaccgatgatcgatactgtattgacaacggggcaatgattgcatacactggtttactggcatacgcacatggcatgaccactcccctagaggagtccacttttactcaaagattccgaacggacgaagttcatgcaatctggagggagaaggagatgccagtgttaactaacatccgtgcccatgcaatggctgaagtatccaaagatgaagcttccgttccgactccaattgctgtagattcatga</cdnaseq>

Protein Sequence

<aaseq>MTSSPAARRRPPGPLALGLESSANKIGIGVVSLSGEILSNPRHT YVTPPGHGFLPRETAHHHLAHLLPLLRAALGEAGVTPADLACVCYTKGPGMGAPLQVA AAAARALSLLWGKPLVGVNHCVAHVEMGRAVTGAVDPVVLYVSGGNTQVIAYSEGRYR IFGETIDIAVGNCLDRFARVLELSNDPSPGYNIEQLAKKGEKFIDLPYVVKGMDVSFS GILSFIEATAIEKLKNNECTPADLCYSLQETLFAMLVEITERAMAHCDSKDVLIVGGV GCNERLQEMMRIMCSERGGRLFATDDRYCIDNGAMIAYTGLLAYAHGMTTPLEESTFT QRFRTDEVHAIWREKEMPVLTNIRAHAMAEVSKDEASVPTPIAVDS</aaseq>

Gene Sequence

<dnaseqindica>4008..4409#3714..3869#43..627#acttcgctgcaaaaccctaccgtcgccgccgcccccgcagctatgacgtcatcgccggcggcgaggcgccggccgccgggtccgctggcgctggggctggagtcgtcggcgaacaagatcggcatcggcgtcgtctccctctcgggggagatcctctccaacccgcgtcacacctacgtcaccccgccggggcacggcttcctgccgcgggagacggcgcaccaccacctcgcccacctcctcccgctcctccgcgcggcgctgggcgaggccggggtgacccccgccgacctcgcctgcgtgtgctacaccaaggggcccgggatgggcgcgccgctccaggtcgccgccgccgcggcgcgcgcgctctcgctgctctgggggaagccgctcgtcggcgtgaaccactgcgtcgcgcacgtcgagatgggccgcgcggtcaccggcgccgtcgaccccgtcgtgctctacgtctccggcgggaacacgcaggtcatcgcgtacagcgaagggaggtacaggatcttcggcgagaccatcgacatcgcggtggggaactgcctcgatcgctttgccagggtgcttgagctgtccaatgatcctagccctgggtataacatcgagcaggtaatgtgttcgatcaaatgccgacttgatatttcctacctcccgtctgatgttgctatggctgtagctgcctgtcagtatgtgcaactttactttgatttaatttctgccattttgattaaatcaatgcaccactttcatggatatgccattgaagtgctgttgaattggtgattgaaatggcctaaattgtggtgactagtgtggataaagtaggaacaggatgattagatagtaggaattgttatggaggatttctgctctctgtgaggtgttcatcgatcctaggtccaggctaccattgagaagttgacctattcattggaatggttaaacttttcaactctaagttgctaataggttgcacccatatgagcccagtgtataggatggaatgatggggtatgtttggttgaatggattgtacagcctttttttttggcacatccaaccttgtaacatgtgtccagagtgatcatgttgcagcatttcccgttgttttattcagtctatgcaatcacttgtgcttcttctcctttacacaaagtagctcatgcgggccatcagacattgtcttagtactttcaaggtaactaaaaaaccaaccgaaatgtaatcctttttgactaaaagcaaaaataggcatgttttcaatttacagttaggattactatattcatgattgtttagcacttgaagctctaaaactggtatgggatcatatatggcttcatcctgagatggtgcaagctaagctgcctttttagatgcactttgtctggtcaactatatgaagttgtcacaaatgtgcatagatgttgtttggttgcctgtatgagctaatttatgtgagtgagaaggagcacaagttattaaatacgtgtcaataacttgtgcacaataggagaatgtagccatacgtgatgatactacataaaagaaatggactgtatgaagcctgcatagttcacatgttcttatggcctgtacaatattttcaaccagaaacattgtacacttagcctgcgttctatactacattttcccaacttctgctcccccgttttccacgcgcacgcttcccaaactgctaaatggtgtgctttttacaaaatccatgttgatccattttcaagtttttagctaatacttaattaatcatgcgctaatctgtcactttgttttgcgtgccgggggaagggttcccaagtccccccaatcgaacacagctaggctgtgtttaggagtagttgggaacttctcttccccgcacgaaaacgattaacatggttttttttaaaacaactttacaatagattttttttcgcaaaaaacgcacagtttagcagttcgggaatcgtgcacacggaaaacgaaggagtagaagatgagaaagtgtagtattgaacacagcccaatctatcttgcccctactacaagcaccacaaatcaataattctctggtacctgttctagctgagctcaatgtgttctgctaactggtgtatagcttcctttaatagtgttcagaaggataattgatattagtgtggataatatttggtgtttggattgattcaatattatccatctttctaatgactaccccctccggttccataattcttgacgttttggacattgacacggcctccaaaatatatcttcgactatgtttttctattatattatatacaataaatatatttttatttttattatagtactttgtaagacaagatatgttgttctagtgtctttaaactaaagattttaaaagtattgatagtcaaagttaaaaaagtttgacctcgaccttgtccaaaacgtcaagaagtatagaactagagggaataagtggtttcttgatataacattgattggagagatcttacatttaagctttgttcttttctcattatattggttgtcctggtattctatcaacactcacgtctacatccatttgcctgtcctagatttacatgatgtcccctaaatttatgcagaccattagaataaaagttatgttccatggaacatcatttttttaaaagaaaaaattagtatgtctaaaatttaatcattactagatattaggctgacataatcatggtatgtttggtaataatgaagcctgctttagcttatttggagtgttcactattaagatggtatgaaaagcccatgtagctccttatttgtttggcccaagcttcaacttcaacttggggctataggttacttcaacctgaagcttgcccaaacagttgggagctttatggactattccttcttgttcactgctgctgctactccctttcctggcatgtatactgctgctgctactccctttcctggcctgtataatctgacaattcaggccaaccttctctaaaggcatgttgcagctgtctgtgtgcagacatctcagatactcttgaccattattgagacttagaggcagaattatgtatttattatttttctccacatgagtcgtaaaggataatcgtgatgaaattgtctgtgttctgcctgtgccttcaatagttgaattgtgtatgaaaatcagttctatttttgtaaagaattcttgtcacaaatttgcattttacaaatatccactcatgccattttatttagcaaagtaagcacaaataacatgcatgcagtagctccattctatttctaaataactttaaagtgttagaatgcttggtaacgttaagccttattcagtatactcggtaacgttatggccatcagcctcaaagaaaaatcttgatcaagttgtgtcggtctatatttcattcattgcctcttctattgcttgtgtgatgtgcagaagtacattgataaactgtactgtactctgtattaacttataagtcacctttcttgttttagcagtttaacatatttagaaaatgaagcttcccatttgtgtcaaacctgttctactagctccttttacatttttttaagaaaaaaattatctttaccattgcgattttctaccacgtacccaatccttttccctgattcatgcttatccaatgtattatatgtctttccttgttcagcttgcgaagaagggagagaagttcattgatctcccttatgttgtaaagggtatggacgtgtcatttagtggcatactgagcttcattgaagctacagcaattgagaagcttaaaaataatgagtgcacgcctgcagatctatgctactcattgcaggtacatgtgtgtcgcaactaacataaatagtaacgttgttgtaattctagttaatattcttgtcctggaatatgttctagttaagtatacagatgaatatgctattctaattaagattcataatggccaattgtccaggaaactctctttgctatgcttgttgaaatcactgagcgtgccatggcacattgtgattcgaaggatgttcttattgttggtggtgttgggtgcaatgaacgtttgcaagagatgatgaggataatgtgttcagaaagagggggtaggctgttcgcaaccgatgatcgatactgtattgacaacggggcaatgattgcatacactggtttactggcatacgcacatggcatgaccactcccctagaggagtccacttttactcaaagattccgaacggacgaagttcatgcaatctggagggagaaggagatgccagtgttaactaacatccgtgcccatgcaatggctgaagtatccaaagatgaagcttccgttccgactccaattgctgtagattcatgaggtacaattgatgtttcctaatatgttttgctgttttcattttcttatgatagttaatgtagttagtattaactgtttaggactaataattttgggacaaacgaaatgacatttaattttcttgtggtgaattcaattgctgttttacatgggtttatttgacatgaacatgatgccactggtttttggcaaacattgtgatggcacttgtgatatttttactgggaaataaattgaaaggcttaccctggaataggtttggaataggtttgctagtacaggaaggaatgcctgcaatagtttttgtgagtccagaaggctgtttgacacgaaacccatttacctattttcccccctcatttgggccttgttgcaaaaacagaaggaaagaaaaagcgtggcaatttctaattactaacatatgctatttattcagttaatacttactatgcattttctcccatgtaccaggtaattcttgttcttttccttcctatccaaggaaatagaatacttggaaaggaagccagagtccagagacatgtacttcggttgatgatacgaaagcctttgtggcggcacatgggaagtttcttgtactgctgtgtggggttaacctggtgaaagatttggatcatcggcaacctcgtaacacttatgtatttcatgttgtatctctcaatagatgaaccatgattaaacaaaccacaccgtctatttggtcagttaagccctactcccttttatgtgatccattcatttgatgtaaaagcgattcctgctgctaatttcactcccatgctgtacctcctagggtgtgtttagttc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0194600, RefSeq:Os05g0194600