Os05g0346400

From RiceWiki
Revision as of 20:08, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os05g0346400

Description

Protein of unknown function DUF538 family protein

Version

NM_001061797.1 GI:115463324 GeneID:4338486

Length

3956 bp

Definition

Oryza sativa Japonica Group Os05g0346400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:16284322..16288277

Sequence Coding Region

16284422..16284508,16287076..16287130,16287661..16288031

Expression

GEO Profiles:Os05g0346400

Genome Context

<gbrowseImage1> name=NC_008398:16284322..16288277 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:16284322..16288277 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaccaggtgctgaacaaggtggggagctactggttcagcaagagggcgagcaaggagatcgactccatcggcgacgacatcagctcaatctctacaagcattggaacaggagctaaatggatggtgaacaagatcaaagggaagatgcagaaagcattgccagaccttctcaaggaatatgacatgccggcgggcctcttcccaagggatgctactaactatgagttcaatgaggagacaaagaagctaaccgtgtacattccttcagcttgtgatgtcgggtacaaggattcgtctgttctgcgattctttacctgtgtgactggctacctggagaagggaaagctctctgatatcgaaggcttgaagacgaaagtgcttgtttggaccaaggtgactgccatcaagactgagggatcgaaggttcatttcactgctggtgtgaagaagacccgcagccgtgacgcatatgaggtagtcagagatggtatccccatagacaagttctga</cdnaseq>

Protein Sequence

<aaseq>MDQVLNKVGSYWFSKRASKEIDSIGDDISSISTSIGTGAKWMVN KIKGKMQKALPDLLKEYDMPAGLFPRDATNYEFNEETKKLTVYIPSACDVGYKDSSVL RFFTCVTGYLEKGKLSDIEGLKTKVLVWTKVTAIKTEGSKVHFTAGVKKTRSRDAYEV VRDGIPIDKF</aaseq>

Gene Sequence

<dnaseqindica>101..187#2755..2809#3340..3710#agcggctgcttcttcttcctcattccaatctccccccaatttcggttggattcgtggaggcggattggggatttggatttggattggagagaggggggagatggaccaggtgctgaacaaggtggggagctactggttcagcaagagggcgagcaaggagatcgactccatcggcgacgacatcagcgtaaaccactccccatcctactactcagatcttttctccttttccacccagaatcttttcttgttttcttgttaaattgaaattgtcggcttgcattggtcgtcgagtggttggttaatcttgcgcggtagatggtttcttcaggaagagtttagattgctgcggatttagcgtatggagtggttcggatggagtcacctgtataaggggttggtctccaatgtcaatgtgtggagaagattgatcgatccggtggcaaagattgccgaatgtgtttcgttgattgtgttggagcttttagttgaagcggatgccgctgatacagggaagggcatcgagtggaattcaaggcggcggttagtagaaattgtcaccgtccaggttgtgctgttagtagcagcatcttgctactaatgtggacgactgatgataatgaatgccgtgcgccgccctgtggcctgatcagcagcatcttgctgtgttggattaggtcttagttggttagtcatttcattaacaaaatgtccctcattcatttttggggagtaatgaatagttgttaattgaaaggttcatagtcaaagtccagtattatgtttttttccgataaaaacagtaatatgtgcataaaaatttgcagacaactttacatgaaatcaagagttgtacaagggccgagtttagttccaaaatttttcttcaaacttccaacttttccatcacgtcaaaacttttctacacacataaacttccaacttttccgtcacatcgtttcaatttcaaccaaacttccaattttggcgtgaactgtaccgcatcatgaagtatagtactggcttcaatagttgactacagtatctaaacatcgtttcctgtcagaatcaagggaaatagggtagaagcaacaagcaagaaacacgagattcactacctgatgcttcttcatgacattattattaaactggctaataatgtataaacgattcccaatatatcctcttatagatctatatgaactgaccttgctacgactatgatcaacataacaaacaaaaagcactaaatactttcttacatcacaactagaaaatattaaagagtgaagtgcatgggtggtccctaaacttgtgcaggtgtgtcatctaggtccccaaattctcaaaatgcattattagccccctaaactcgattcagcgtccatcagtagtccgaaacagccacgacacgctttgactgatgacgtggcatgccgacgcggaggtgctgacaccgttgcaagggcagttttgcaaagatccccttctattttactggccatcacaatgcaaatccctgcatcaaatcccctagctactttgtttccaagctctcgatgccacaatcttccctagccctcgtcggcacattaaatactttcttacattaaaatgtatttcacgtgtctagaactttgacacaatactgactttgactcagaatacagggaccatcttgaaactttgtatgtcagaagataaactaattactcatgaatcatcaataaataaatgaactaatccagtaaaggcatcacatttgaacatgttaagtgattctattttgattttagattcttttgtccctttgggctgcacttctgcatggtctcatcatgaaagcatacttaactagaaatctacttattccattagcatgggcatgggcattctaaaaaataaaacattgtttatacttaaaagttatcaatcatttctccaactgaccttccaatgcttggtagccagaagctataattgcatagttcctggtatattgagtatagattaacactatgacaaccggtcaggggctagaccatcaaataactacatggtatcaaatgaaaaggttgaatatgcagcaatgaaaggatcatgcctaagtccgtattgaatgaaggtgtgcagtggatatgatgatctgattatggttggcactgcgctgtaggtgtttgtgaagtagataattgcagttatatctacatgggaggaagtcagtgactggaggaagttggtttgactcctgagtccttgacttgtgaaaatacaagggtcattgctccatattagctggtagtgatggtggggataatatgtaggtcttagtcaattaagctgcaaattcttttgctagtctatttctgcttgttcgttataggatgaattgtacagttgacttgagagttgatgcgtaactggagtaccaagtttcttcgcttctattatagcacatcatgattcttgaatcttaccagagcatgcaaagtgaactaagctaaagcattgtaatcgtgctcactgtcatttctatatggcacttattagttatatgaagcatgtcaggattctatttttggaatactacattttaatagcttccttttgatattcgttaccatgattataaatgtagtgtataagacgtttttggtaagtatggcatttcactatctgagttccagattctgctaggataagccaaattatgcagtgtaagttctaacattactatttacatattgaatacagtcaatctctacaagcattggaacaggagctaaatggatggtgaacaagatcaaaggtatctatgtgtattctgtattattgaatttctaacaaaaatgtgatgtagcaaatagctgcaccattcaatatgctgtatggcacacataaacagatggacatcaatcaatatatgccatccattatctagctcaacaaaaataagatatagcaactagctgtaccgcccaatgtgcgtatccttagaaataacatatgaacaggatgaattatacgccgatatctagtttgtagagaaacagaaggaaacaaacacaacttacacttcttacttagttttgcattatttctctactcaaatggccgttgcatcccttcagctagagttaacaaattttatcacttatgaagcaactcaaataatattgctatgggcagcgatatatacaaaagttaaagatggcatccatgcatattacctacacattccacgttgaaggcatgtaggccattttttcttatgtttatgacatttttcccaagtagacttatatctgattgtgagtaataaacatgttttggtctcagggaagatgcagaaagcattgccagaccttctcaaggaatatgacatgccggcgggcctcttcccaagggatgctactaactatgagttcaatgaggagacaaagaagctaaccgtgtacattccttcagcttgtgatgtcgggtacaaggattcgtctgttctgcgattctttacctgtgtgactggctacctggagaagggaaagctctctgatatcgaaggcttgaagacgaaagtgcttgtttggaccaaggtgactgccatcaagactgagggatcgaaggttcatttcactgctggtgtgaagaagacccgcagccgtgacgcatatgaggtagtcagagatggtatccccatagacaagttctgagcttgtacctgccatgaaaatgtgatgtaattaattagttgacgccttctacaacaaatatcaattgtcatatctcgtgttatgacctatttaactgaactgtattgccataatattgattgtccggcccaagagtgtttctcagcaccttaaaaatttggtgcttatttggttgtgattgtgaatcttgtagacggttttatgtttacttagtttaaggccatgtttggcaccacttcaagtctc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0346400, RefSeq:Os05g0346400