Os06g0179700

From RiceWiki
Revision as of 20:18, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os06g0179700

Description

Similar to DNA-binding protein phosphatase 2C

Version

NM_001063506.1 GI:115466743 GeneID:4340303

Length

4291 bp

Definition

Oryza sativa Japonica Group Os06g0179700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:3946928..3951218

Sequence Coding Region

3947308..3947875,3948270..3948466,3949068..3949268,3950853..3950969

Expression

GEO Profiles:Os06g0179700

Genome Context

<gbrowseImage1> name=NC_008399:3946928..3951218 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:3946928..3951218 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtgcgtggaggagtcggagggcgcggagaggctggattttggggagcccgccgccgccgccgccgacgccgggaagagcaagagcaagagccccgacgaactcccctcgcctcggatggaaagagtttgtgagaacactacagctgctgatttcaagcaaaataagtctggtaattttgtcccaaatattcgatctggggattggtcggatattggaggtcgtcaatacatggaagatacccatgtgtgtattactgacctagctaagaactttggttatcaatcggtggataatgaagctatttccttttatggggtctttgatgggcatggtggaaaagatgctgcccattttgttcgtgataatttaccaaggatcattgtggaagatgctgattttcctcttgagcttgagaaagtagtaagaagatcctttgttcatgcagataatcagtttgcaaagacaacactgtcttctggcacaacagcacttacagcaatgattttcggaaggactcttctgattgcaaatgctggagattgtagggcggttctttcacggtgcggcactgcaattgaaatgtcagtggaccacaggccttgcagcctcagcgaaaaactgcgtgtagaatcacttggtggctatgtcgacgatggttacctcaacggtttgttaggagtcactagagcactcggtgactggcatcttgagggcatgaaagaagctggcaatccaggaggtccacttagtgctgaaccagagctaaagatgatcacactgacaaaggacgacgagttcttgataattggcagcgacgggatctgggacgtcttctcaaaccaaaacgtggtggactttgcacggaggcgcctccaagaacacaacgatgtgaagtcctgctgcagggagatcgttgaggaggcaataaagcgaggcgccaccgacaacttaaccgcggtgttggtctccttccacctggaggctcctccccaggtcagagtgagccgacccggtagggtggcgcgcagcatttcggctgaggggctgaacagcttgaggacactcctgagaaaccaatga</cdnaseq>

Protein Sequence

<aaseq>MCVEESEGAERLDFGEPAAAAADAGKSKSKSPDELPSPRMERVC ENTTAADFKQNKSGNFVPNIRSGDWSDIGGRQYMEDTHVCITDLAKNFGYQSVDNEAI SFYGVFDGHGGKDAAHFVRDNLPRIIVEDADFPLELEKVVRRSFVHADNQFAKTTLSS GTTALTAMIFGRTLLIANAGDCRAVLSRCGTAIEMSVDHRPCSLSEKLRVESLGGYVD DGYLNGLLGVTRALGDWHLEGMKEAGNPGGPLSAEPELKMITLTKDDEFLIIGSDGIW DVFSNQNVVDFARRRLQEHNDVKSCCREIVEEAIKRGATDNLTAVLVSFHLEAPPQVR VSRPGRVARSISAEGLNSLRTLLRNQ</aaseq>

Gene Sequence

<dnaseqindica>3344..3911#2753..2949#1951..2151#250..366#acacacccacctccatttccctcccatttctttccttctccgcagatattccccaagaatctcctcctcctcctcggattcccctctctctctcctcctacagagtagtagcttgtgcttgctttgctccgattctctctcttccctgtctctcctagctgcaatataccactagcagcagggcgcccagttgcgcgatcgatcgatcgagctccgtggtgccaagaacgccctgtacggcgcgccggtatgtgcgtggaggagtcggagggcgcggagaggctggattttggggagcccgccgccgccgccgccgacgccgggaagagcaagagcaagagccccgacgaactcccctcgcctcgggtgagtagggtactacttggttttctctctcttccgcaacgagagattcgattctttgtcttggggcgtttcttcttcgttaggttcgtttgatttcccttcatggcgtgaaggaaggaaggacgatgatgatgagattgggaaggaaggaaggaaggaaggaagcaaagcatgcccttctgggtgcttgctttgtgcacacgcctcttccgtttcttgaaacacatggagtattattagaagtgattgtgattcttttttcttgtttaattattactgctagctagtactgattgtgcctagactgatcgtgtgtgtggaggagttaagttttctgcatttgttagctgcgaagtttggtggcctggtaggtgttcttcttgccaatgtgtgatgatactactactaatactacgttattggtcacctgttcattgcattgttcattggtactttgattttgtactgaatatatataattatagtcgcagcttccaatctctggcttgttcattgtggagtactaagggggtgtttagatggggctaaaactttttagtccgtgtcacatcgaatgtttgacgctaatttggagtattaaacatagactaataaaaaaactaatttcataaatgaaagctaatctgcgggacgaattttttaagcctaattaatccataattatgaaaagtttactgtagcatcacattgtcaaatcatggtgtaattagactcaaaagattcgtctcgcgaattagtccaaggttatagaataggttttataattagtgtatgtttaatactctaaattagtgtataaacatccgatgtgacagggacttaaaataagtccctgtttcccaaacaggccctaatttcagactgttgtacctaccaaacagggcaaaaacaatcatcacgtgctttagaacaggaaagaggtagtacctgcaaagtgtacatggtactttatttccctctcttgactgaaatgaggaaaaaagagtggttcttgtgcttctctctcacccaagggcacatttttcctgaagtgatccatgtggtttgctaactttgaagtgttcttttttcttcatatcagttgtagaaactgcttggctttaattatctatggctagtgagattgttggatcataagtgttgcggcattaattttttgctatggagagtgctgaagcgtgtagtttttgatgatatatttgttgcatctagcaaacaccaggcagtagcagctatgggatcttttcttatgtgatgttaccccaagtgcttaatcttctgttttgttatctggagttacatttatcggccgttgacactcaatgaataattcattcattactcgttagctagtaaatcatctaataaataaataaaatgttcaattggggtttgaaataacttgtctagccacgtttctaaagaagcattttaaagaatgtaactttgtagcaaagtattgcctcctcttttcattagagttgttgtttcctattaattgctccagctctgaatttccagtacaaattaattgatctagcattaatccttttgtttggacagatggaaagagtttgtgagaacactacagctgctgatttcaagcaaaataagtctggtaattttgtcccaaatattcgatctggggattggtcggatattggaggtcgtcaatacatggaagatacccatgtgtgtattactgacctagctaagaactttggttatcaatcggtggataatgaagctatttccttttatggggtaagcactttcccgctcatttgtatgtttccccgattctgactgaccaaatgagtacctacctttttttgtgcataaacttacagctaaaaagagactagcatgtcatgaatgaaagtagaaacttttgtcagatttgttcagaactagatatatgttcttccagttcagtagtaacatatcaatagcatccagtagaccagtacgctagtccagtagtaacatatttgtgtagtgcgcatagtagaaaataaacatgccatctgcattttttgacccagcttatttgtgtagtgtaacaggagtacaattactaacaaatttgtatgcattcttaaggactatccaaccaatcatatccaaacatcctccatactcacacctacagaacttgatcttattcttcactgtttcaattttaatgaaatcgagatatctcagtaaagttactctactatcacatttttggggctcagtttttatttaatgttcaataagtggctttataatttttcttattcttctgcttctgtattttgataaaactactaatcatagcacgtttatgtgaattaagtctttgctccatttccactatcaggtctttgatgggcatggtggaaaagatgctgcccattttgttcgtgataatttaccaaggatcattgtggaagatgctgattttcctcttgagcttgagaaagtagtaagaagatcctttgttcatgcagataatcagtttgcaaagacaacactgtcttctggcacaacagcacttacagcaatgattttcggaaggtgcttttatgacacattaaactgtggttttcccatctttgaatagtatgcttataagaatcagttatcagtaccatgagacatgaactaaatacctgcgacaatcttggtttccttattgctattcaattttactttgggcttggttagatacttagatctactagcagatgtgttttccaattatgttaagctataagatcatgcctgtttttgaatctttatcacgtgctatagatttcattgctttattaattcctagatataattctaaaagcatgaagtggcaaacatccatatcatgtctttctgtaaactttttgctacgtttttatacctgtcacttgttcgcaaacacttatgatggatactgatatcttcatgtctactgcaggactcttctgattgcaaatgctggagattgtagggcggttctttcacggtgcggcactgcaattgaaatgtcagtggaccacaggccttgcagcctcagcgaaaaactgcgtgtagaatcacttggtggctatgtcgacgatggttacctcaacggtttgttaggagtcactagagcactcggtgactggcatcttgagggcatgaaagaagctggcaatccaggaggtccacttagtgctgaaccagagctaaagatgatcacactgacaaaggacgacgagttcttgataattggcagcgacgggatctgggacgtcttctcaaaccaaaacgtggtggactttgcacggaggcgcctccaagaacacaacgatgtgaagtcctgctgcagggagatcgttgaggaggcaataaagcgaggcgccaccgacaacttaaccgcggtgttggtctccttccacctggaggctcctccccaggtcagagtgagccgacccggtagggtggcgcgcagcatttcggctgaggggctgaacagcttgaggacactcctgagaaaccaatgatggccatcttctttgcattcttgctgcaatttctctagtatgttgcattgccgagtgttaattgtatgtagtgatctcggcacctcattgttgttagatgttaccaccattgttgtgatgacaccagctattattcttgttggtaattaagccaacgaacatgagttctgagctctcaaattgtgagaaattctaagcggctgtaacaagttgagctctgtgaagaaagaagtgagtgcccaagctcacagtgtcatatttttctcctattcttgtctgtaaataaaaatgtcagctactcagctcctgggtaattgaacgttgaccatgtaaaagatacccccattgagtgaaattgccgccaattggctcatcttttc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0179700, RefSeq:Os06g0179700