Os06g0232100

From RiceWiki
Revision as of 20:20, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os06g0232100

Description

Protein kinase-like domain containing protein

Version

NM_001063760.1 GI:115467251 GeneID:4340578

Length

6983 bp

Definition

Oryza sativa Japonica Group Os06g0232100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:6822037..6829019

Sequence Coding Region

6822534..6822648,6823226..6823402,6823485..6823534,6824532..6824600,6824679..6824777
,6824865..6824943,6825788..6825888,6826829..6826897,6827732..6827772
,6827977..6828973

Expression

GEO Profiles:Os06g0232100

Genome Context

<gbrowseImage1> name=NC_008399:6822037..6829019 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:6822037..6829019 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagtacacagagcaaagataagtcctctgcagcgaataattcgtcatcaagttctccttcatcttctgaggtgggtggtgctccagcagtacgaaggatgaaagtgaaagatgtctcagaatatatgattagtgctgcaaaagaaaacccccagatagctgagaggatccatgctgtcttacttgaaaatggagttgtcccaccacctgatttgttttcagaagaatcaagggaacaacctaaagaccttattgtgtatgacacatctctgtttcaaactaaagatgaaatgataaagaggatgaatgagcttgaatctacaacaaacgctgatttttgtcatggtccttcggtgccacatccccctggacatgaactccaaacaaaggctgttccttatcggattcctctggatcttaaacctatccaggggctgggtacctaccatccctcagattcccggaacagtactggtagttcacatatgtatgaaccatctgcacctccccaggaggatccactacaacttataaaacaaatgcctgttgcagcagctgctgttgcaaccgctgcagtggttgcatcctcaatggttgtcgctgcagctaaatctaacagtgatatcaaactcgacgtgcctgttgctgctgcggcgactgctgctgcagttgtggctacaactgctgctgttaacaagcagtacgaatacttggaacctggttgtcaattgcttagtttgccaagttcttcaggggcaaatgaattgatcccgaagggtagacatgacttctgggataatcagcttgaaattgatcatggacaaactagtgttcccgagaaagaaaaagatttggttgaagtacctcaggaagctgaaagagtctctgacaagtcggttgggactgaaagctcaagatctgatattgccctagatggtgttgcagagtttgaaatccaatgggaagagatcactctgggagaacgtgttgggctaggatcctttggagaggtgtacaaaggggaatggcatggaacagaagtcgcagtgaagaaattcttgcagcaagatatatcaagcgatgctctggatgaatttagaactgagttccaaataatgaagagattgcgtcatccaaatgttgttctatttatgggtgctgttactcgtgtacctaatctttctatcgtgaccgagtttcttccaagaggtagtttgtttcgattgattcatcgacccaacaaccaattggatgaaagaagacgtctaagaatggcacttgatgtggctcgtggtatgaattatttgcacaattgctcccctgttgtagtgcaccgagatttgaaatctccaaaccttcttgttgacaagaattgggttgtgaaggtttgtgattttggtttatcacgtatgaagaatagtaccttcctttcctcgagatccacggctggcacagcagagtggatggcaccagaagtacttcgaaacgaaccatctgatgagaaatgtgatgttttcagctacggggttatattatgggaacttttcacactacttcagccatgggaaggtatgaaccccatgcaagttgttggagctgttggttttcagcaacgtcgccttgatattccagctcatgtggatcccaccatagcagagataataaggagatgctggcaaacagacccaaagatgcgtccatcattttcagagatcatgtcttccttaaaaccattattgaaaaacacgcttgccaatcaaccccaaaggcagcgagtgcaacgagcagatggctaa</cdnaseq>

Protein Sequence

<aaseq>MSTQSKDKSSAANNSSSSSPSSSEVGGAPAVRRMKVKDVSEYMI SAAKENPQIAERIHAVLLENGVVPPPDLFSEESREQPKDLIVYDTSLFQTKDEMIKRM NELESTTNADFCHGPSVPHPPGHELQTKAVPYRIPLDLKPIQGLGTYHPSDSRNSTGS SHMYEPSAPPQEDPLQLIKQMPVAAAAVATAAVVASSMVVAAAKSNSDIKLDVPVAAA ATAAAVVATTAAVNKQYEYLEPGCQLLSLPSSSGANELIPKGRHDFWDNQLEIDHGQT SVPEKEKDLVEVPQEAERVSDKSVGTESSRSDIALDGVAEFEIQWEEITLGERVGLGS FGEVYKGEWHGTEVAVKKFLQQDISSDALDEFRTEFQIMKRLRHPNVVLFMGAVTRVP NLSIVTEFLPRGSLFRLIHRPNNQLDERRRLRMALDVARGMNYLHNCSPVVVHRDLKS PNLLVDKNWVVKVCDFGLSRMKNSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVFSY GVILWELFTLLQPWEGMNPMQVVGAVGFQQRRLDIPAHVDPTIAEIIRRCWQTDPKMR PSFSEIMSSLKPLLKNTLANQPQRQRVQRADG</aaseq>

Gene Sequence

<dnaseqindica>6372..6486#5618..5794#5486..5535#4420..4488#4243..4341#4077..4155#3132..3232#2123..2191#1248..1288#47..1043#tgaaaatttgcctgttattcatgaatctagaaatacagaccataccatgagtacacagagcaaagataagtcctctgcagcgaataattcgtcatcaagttctccttcatcttctgaggtgggtggtgctccagcagtacgaaggatgaaagtgaaagatgtctcagaatatatgattagtgctgcaaaagaaaacccccagatagctgagaggatccatgctgtcttacttgaaaatggagttgtcccaccacctgatttgttttcagaagaatcaagggaacaacctaaagaccttattgtgtatgacacatctctgtttcaaactaaagatgaaatgataaagaggatgaatgagcttgaatctacaacaaacgctgatttttgtcatggtccttcggtgccacatccccctggacatgaactccaaacaaaggctgttccttatcggattcctctggatcttaaacctatccaggggctgggtacctaccatccctcagattcccggaacagtactggtagttcacatatgtatgaaccatctgcacctccccaggaggatccactacaacttataaaacaaatgcctgttgcagcagctgctgttgcaaccgctgcagtggttgcatcctcaatggttgtcgctgcagctaaatctaacagtgatatcaaactcgacgtgcctgttgctgctgcggcgactgctgctgcagttgtggctacaactgctgctgttaacaagcagtacgaatacttggaacctggttgtcaattgcttagtttgccaagttcttcaggggcaaatgaattgatcccgaagggtagacatgacttctgggataatcagcttgaaattgatcatggacaaactagtgttcccgagaaagaaaaagatttggttgaagtacctcaggaagctgaaagagtctctgacaagtcggttgggactgaaagctcaagatctgatattgccctagatggtgttgcagagtttgaaatccaatgggaagagatcactctgggagaacgtgttgggctaggtacacttctcttggtttctttaaattcattttgttcatagctcccctactatgttttgactatctgcaggattactcagctaattttcccattcatgagcattacctccccattaaattgaataaaagccgcatacaataatgttgtatacttgtatcatattttccatcttgtttcaacttcctcctttttctgtgcatcaggatcctttggagaggtgtacaaaggggaatggcatggaacagtaagtttttcacctaatatggctcaccgcaataccatatttctaaattatcaccaagttgaaataatgaaagcaaacttttgttctaatgaatccgtgtgcaatcaagacattaagttcttgttatagcatagtcaacatatcatgtgaggatcaactaacctcattaacctgtgtcttttttaagttctagccttgtcaatatagcaaaaagcttggatatctttacattatagtttctggttggtcgcatactaggacacaacaactgtttctacaggttgcaccagcacacctaattgtaattggggggattatatcatatcccttaataaatcataaatggaaaattccattttaatcagtatcattagtgtccacttaacacactaaactttcaatcattttaatcaaccccctaattggatggctccacccactttggccagttttgagtgtggttccgtggtgccaccatggacactatgtaacctggttttgccagccggcgttagttttcatcttatgtgtgtgcttctaagtaatctagtagtcgctagtatttcttcacaaaaaaagacactccattcattttagagaaatatttcttttgactttgtattccacaagctgaaaatacctgggacactttgtttttttttcgacaacttaaagttgaataatattaaaataaatgtgccaaggaactgcttgattagattagcttgagcaccttcctttgtttccctctatgttcgagcagctcgagagtgatattcattatcctttatttgttatgcattttgtgccttacctacttgcccctctgtgtaggaagtcgcagtgaagaaattcttgcagcaagatatatcaagcgatgctctggatgaatttagaactgaggtaactgtctgcaatccaaatttatgactgcaaaaaaagaaaaaaaacttagcgttgatactgcatcccagcatgttttgttttgtgacataaacgaggcaatcattttggttcaatgaaacgaatcatattagatgcaaaatttacatatattccattcagctaaggttttgagctcatttttcttgtggtgtatattttgtatatccatttgcctgagctgataaggtctgactaataggccaaatattatattagtttatgacaattaattggtctagttgttgaacagataaaggcatctgaggccatttgtaagtgcttatttaactccctcaacatggtttgaatgtttgacgacttttactttgaccatagtacgaaaagtcggaccggccattgaatcagttagagtacttggttcactggtccatcggtctgactggcaggctgctggtttcaccgcaatccaaacacattagttagatttaacattccctctatgccacaaccattcaactgcctaggtgggagtggagcttccattgaatccaccagggatcaatccccattccgcaccaatttctgatttacattccaaataaatgggccttgatacatcagtttcgctatatggtccttaaagtagcccaagttctgctggtgcgcatgatgagctaccgtctggcctttgttggttcactggtttacaggagacattgtccggttcagccggttcatcccagttcaattgcggagatggtcttgagagcaaactaagccatcaagggtgttggttccggtcttttccggtttaactgctggcccagtctgattttttgtactatgcgtttgacatgacatgcttacatcattacaatgatcacgcagatgttccaaaattttgtccgtgcttttttcactcttccttgatatgcagttccaaataatgaagagattgcgtcatccaaatgttgttctatttatgggtgctgttactcgtgtacctaatctttctatcgtgaccgagtttcttccaaggtacatttttctctgttcatgcaattctctttccaatttataacgtcttaattagtagtaccaagtatagtaaccacttatttttatcctggttttgttatctctcttaactaaatattattctactaacatttcactttcgcattattttctgacttttatcaaaagtgataagtagtttacattaatttcctttttggaaacttattacacattaaaaaaatattgttgtgggctagtggtgggtgtcaccgtttcagaattctgaaacaaataatataggtaataggaaatccctctgtccctatgcactgctccaaatttttcataaattgagatgttttccataggacaaccagttttttttttttgttacacaatgcatgtacgaattgggtgacactttttcaaaaactctaaaagaaattctgggatgaaatacaagtaatagttttatacacatggcaaatttctttagcagttccttttcttttattgtttacatatgtaaagattggacattgaaattttgcatgtatgcatgactttatgtctacgccatgtatattttggattcttttggacatcatgtgattttagaagatgggggagctttgtccctgggtcagcaaatttgcattggttagttagcaacaaatatagaagatgatggccaagcatcatgcaaaccaatacataatgcatgaccggagacagcaagttcagttgcatataaaataataagcatttttcagttgaataccatcatggttctaatattttatgtcgtagggttctaaccagcatagttgctaactacaatgtattaatattgacattgtagaggtagtttgtttcgattgattcatcgacccaacaaccaattggatgaaagaagacgtctaagaatggcacttgatgtggtatgcctaaagattccctatcctgatccacttagatggagaatttcaagctaaatttgtttcttacttcctttcttcttgcctcaggctcgtggtatgaattatttgcacaattgctcccctgttgtagtgcaccgagatttgaaatctccaaaccttcttgttgacaagaattgggttgtgaaggtaagaaacaggttgcctcatcagtaatatgcattggatgtttggcacttataaccatttgcttattttattatttaggtttgtgattttggtttatcacgtatgaagaatagtaccttcctttcctcgagatccacggctggcacagtaagctgcttatatttttttaattaaatattttccagctgttatgggattaagaaactcttattttaacaaaaaaaattatatgtgcagcttatctgtagtttttgcttagtatttaattgacttttgatatagttatactctcccattctcaaatagaggtttagtgttttacacgacaaacaataaggtaaatatagataagaccaccctgccgttgttagtgatgctaattgttgctgttagaatcaactcttatagagtagtaaatggtattggaactggaaagtatcattaaaaggattggagttcatcttgaaaatgtagcatgacatgtatctaggaccaaaatatgctataattgtgtgtgccaaaaaacagattgaatagtaagatgtttatatagtaccattgagtaggattgtaggaaaataattcaaatgcatcctgaatcgattttactttttgaggacttgtgcaagtagctagaagggttgggaactgggagaatgttgacattcaagcccagaagcttatccatggttcattgtgatttattctgatactcatcttttacaaacttgcatctttggtttatcttttgattattctgtattgccataattgaatctacaaactgtatctgttttcctgttgttatgagaatgaaatggttccatcagatggttcagtgaagaaatatcagtatataaaatgaaatggatcaatcggatggtttgatgaaaaaatatcagtacctgtaattcaatacggacaccatagacatagtatggtcttattcatggaaagtttagctggttcctgatttgatctatccatgtatttgctgtgattggtttaacattgtgctttttagcattgaacatcactggtcttgcctctgggtgctcttttgtaagctatggataggaatgtgtaattaattgacttcacaaagctgtttctagaggttactgattacctgcatgacatacaggcagagtggatggcaccagaagtacttcgaaacgaaccatctgatgagaagtaggtttctcatgtttttatgatttatcttttctttagtttagtcagcttgcatttgccaaatatatttgcatttttgcagatgtgatgttttcagctacggggttatattatgggaacttttcacactacttcagccatgggaaggtatgaaccccatgcaagttgttggagctgttggttttcagcaacgtcgccttgatattccagctcatgtggatcccaccatagcagagataataaggagatgctggcaaacgtgagtatgctttgatttgctgggctgcagtgactgttttctgaatatgtagagcattctttgtataaatatgctactactgttcataaacttatgacattataaaatccatgcagtcaaacttctttaacaactgcatatcaaagtctgttaagattgatcatgtaaactgataccattacatttgtcacttaaagtatattttcatattattacagtcttttagttttcatgtgcatattcatacaagaattaacggtatgaaacttactttcttttagttgacaaatttactatcttattccaactagtatgaacaagcgaagcaaacttaactaccatgaatttgatatgtgttttgtatacaaaattggagtatgtttagatgagttgtatgtcactatatgtggagggataaaagatattcttctccacatatagtgacatgcaactcatctaaacaaaatggatagatttattggtttcgtgatgaacttctcaataaattgaattgatgccttcctcttgtctgcctctgccactatcttaactccattttgtttttctgttgctgcagagacccaaagatgcgtccatcattttcagagatcatgtcttccttaaaaccattattgaaaaacacgcttgccaatcaaccccaaaggcagcgagtgcaacgagcagatggctaagaaaatggaggtcaacaccaggcgacaacgttaaaacaaggtgccttggtctttcatgccttccagtaactgcccacctgtaactataccattattttgtatagcaacatcaaatgcatggctaaggtgaaaaaggtgaagttctatttttgtccacccgtccgaatacactgtaaattttccacaggcaaagaaatgccgagcttagaaaagcagccaacccatcaagcaaaagaaaaggtaaaggagggaaaaggaaaatttgtgcaaaactactgtacatttttttttcttccttgtcatttctttggttcccaaaggttgagtattaatgtgtaaggcccaatcaattgtattgttgttcaacataaaaggtcagtcatcttaatcagcaagcttgaagaagccctctggcagggcccctgtgtatatcacattctgacaaattcgtcggaactgacaattagattgcaggagaaaaacccctttttgtacct</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0232100, RefSeq:Os06g0232100