Os08g0111200

From RiceWiki
Revision as of 20:43, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os08g0111200

Description

Protein of unknown function DUF608 domain containing protein

Version

NM_001067360.1 GI:115474456 GeneID:4344485

Length

6091 bp

Definition

Oryza sativa Japonica Group Os08g0111200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:579366..585456

Sequence Coding Region

579466..580551,581141..581538,581668..581729,581928..582000,582101..582171
,582308..582495,582577..582724,582948..583003,583092..583145
,583247..583350,583464..583564,583645..583715,583812..583911
,584073..584143,584259..584315,584653..584769,585000..585029

Expression

GEO Profiles:Os08g0111200

Genome Context

<gbrowseImage1> name=NC_008401:579366..585456 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:579366..585456 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggaagttcagaattggaggaaaccaaggcagtcctgcacatggattgtgaaaagccaccagcaatatcttgggagaggacatttgatgatgaaggaaagaaggttgcaatgtttagcatgaccttgaatgacatgatggcaattgtgccgttgatgattaaaatgctgggactaaacctgaaagacaatgcaaaaggcctggcttcagtgtatgatccactgaagaaatggatggacaactgctaccgcggtgtacccctcggtgggattggtgcagggagcatagggagaagctacaggggatattttcagcagtttcagatattccccagtatatatgaagagaagcctatcctagcaaatcaattttcagcattcatttcgcgccctgacggaaagagatactcgacagtgttgtcggcaccgaatgccgatgtcctcaagggaatcgataaagctggcattggatcctgggactggaagctgaaagagaagaattgcacttaccatggcttgttcccaagatcatggacagtatacaatggtgaacctgaccctgaaattaaaataacttgccgtcagatatcaccgttcattcctcacaactacaaggagagcagcttccctgttgcagttttcacttttacgttacacaattctggaagcacacctgcagatgtaacactgctcttcacatgggcaaattcggttggagggaaatctgaactgaccgggaatcataagaactccagaatgacgacggcggatgggcgccctccggtgacgttcgcgatcgcgtcgcgggagaccgacggcgtccgcgtcaccggctgcccgcgcttcacgatgggaccatccaactccggcgatgtcacggcgaaggacatgtgggatcagatcaacaagaatggttcgttcgtcggggacggcaatgcggcggcggcggcgacgggagcgtcgaggcccgggtcgtccatcggagcggcggtggcggcgacgacgacggtggcggcgggtggcgcgcgcgcggtgtcgttcgcgctgtcgtggtcgtgccccgaggtgaagttcccggcggggagaacctaccacaggaggtacaccaagttccatggcaccgatcgcgacgcggctgctgagcgcctggcccacgatgctcttcttgaacacatgaaatgggagtcccagatcgaggagtggcagaggcctattctgcaggacaagagcctacctgaatggtatccaattacactgttcaacgagctctactacctcaacgctggaggcaccatttggacagatgggcagcctccgaagaacaccagcctttcgtcagcgactgagccgttcaacctcgacacgttcagtacagtcgccaacggcggcagcgcggtcgacggcattttgagcacggtggcggtggcggcggcgcggtcgaacacggcggcggcggcggcggcggcgatgggcacggcgctgctgcgcgacggcgaggagaacgtggggcaggtgctgtacctggaggggatggagtacaacatgtggaacacctacgacgtccacttctacgcctccttcgccctcctctccctcttccccgagctcgagctcaacctccagcgcgacttcgtccgcggcgtcctcctccacgacccctgcctccgccgcacccttgacggcgccaccgtggcgcgcaaggtgttgggagcggtgccacatgacatggggctgaacgacccgtggttcgaggtgaacgcgtacatgctgcacgacccggtgaggtggaaggacctcaacccaaagttcgtgctgcaggtgtaccgcgacgtggtggcgacggggaacgccggcttcgcggaggcggcgtggccggcggtgtacctggccatggcgtacatggaccagttcgaccgcgacggcgacgggatggtcgagaacgagggccgccccgaccagacctacgacctgtggtcggtgtccggcgtcagcgcctacaccggcggcctctgggtggcggcgctccaggccgccgcggccatggcgggcatcgtcggcgacggcgccgccgaggcctacttccgggggaggtaccaccgcgccaggcgcgtgtacacagacgagctctggaacggcggctacttcaactacgacaacagcggcggcgccaccagctcgtcgatccaggccgaccagctcgccggtcagtggtacgcgcgggcgtgcgggctggagccgatcgtggacggcgacaaggcgcggcgagcgctggcgacggtgctcgactacaacgtcatgcgggtgaagggcggcgccatcggcgccgtcaacgggatgcggccggacggcgccgtggacgcgtcgtcgacgcagtccaaggaggtgtggcccggggtgacgtacgccgtcgccgccgcgatgatccacgaggggatgccggaggcggcgttcaagacggccaagggcatccacgacgccggctggggcaagcacggcttcggctacgcgttccagacgccggagtcgtggacggccgacggcggctaccgggcgctgcactacatgcgcccgctcggcgtctgggcgatgcagtgggcgctgtcgccgccggtgctccacaaggagcacagggtggcggcggtggcggcctcgccggaggacgccgcactggggcaggagaagttcgacaaggtagcgagcatgctgaggctgcctgaggagcagcagcacaaggggatccttcgggcgctctatgatactcttcgccaattgctgctcccatcatga</cdnaseq>

Protein Sequence

<aaseq>MGSSELEETKAVLHMDCEKPPAISWERTFDDEGKKVAMFSMTLN DMMAIVPLMIKMLGLNLKDNAKGLASVYDPLKKWMDNCYRGVPLGGIGAGSIGRSYRG YFQQFQIFPSIYEEKPILANQFSAFISRPDGKRYSTVLSAPNADVLKGIDKAGIGSWD WKLKEKNCTYHGLFPRSWTVYNGEPDPEIKITCRQISPFIPHNYKESSFPVAVFTFTL HNSGSTPADVTLLFTWANSVGGKSELTGNHKNSRMTTADGRPPVTFAIASRETDGVRV TGCPRFTMGPSNSGDVTAKDMWDQINKNGSFVGDGNAAAAATGASRPGSSIGAAVAAT TTVAAGGARAVSFALSWSCPEVKFPAGRTYHRRYTKFHGTDRDAAAERLAHDALLEHM KWESQIEEWQRPILQDKSLPEWYPITLFNELYYLNAGGTIWTDGQPPKNTSLSSATEP FNLDTFSTVANGGSAVDGILSTVAVAAARSNTAAAAAAAMGTALLRDGEENVGQVLYL EGMEYNMWNTYDVHFYASFALLSLFPELELNLQRDFVRGVLLHDPCLRRTLDGATVAR KVLGAVPHDMGLNDPWFEVNAYMLHDPVRWKDLNPKFVLQVYRDVVATGNAGFAEAAW PAVYLAMAYMDQFDRDGDGMVENEGRPDQTYDLWSVSGVSAYTGGLWVAALQAAAAMA GIVGDGAAEAYFRGRYHRARRVYTDELWNGGYFNYDNSGGATSSSIQADQLAGQWYAR ACGLEPIVDGDKARRALATVLDYNVMRVKGGAIGAVNGMRPDGAVDASSTQSKEVWPG VTYAVAAAMIHEGMPEAAFKTAKGIHDAGWGKHGFGYAFQTPESWTADGGYRALHYMR PLGVWAMQWALSPPVLHKEHRVAAVAASPEDAALGQEKFDKVASMLRLPEEQQHKGIL RALYDTLRQLLLPS</aaseq>

Gene Sequence

<dnaseqindica>4906..5991#3919..4316#3728..3789#3457..3529#3286..3356#2962..3149#2733..2880#2454..2509#2312..2365#2107..2210#1893..1993#1742..1812#1546..1645#1314..1384#1142..1198#688..804#428..457#gtacagtttgttctgtatgtgagctttggctctgattgttttcttgtacagtttgcttaaactctctccttcttaatatatactccggccggctttcgaaaaaaaatcttagcatctgctgaatgagaagagcagtctaagtgtctagtgctgttcagattcaggtattactctcttcctcctcctcctccttagttgatacttgatagttctcggttagttttctgcagattcctgaaatgcatgctttgcattcagatacctgagtatttgtgttgtgctgtgttttttattgctgatttacattcagaaatcttgatatttgcttagtcatgttcttgacatctcgacaagtctttaaatttacatcttgtccttgtgcccatattagctgcccagccgcaatccaaccggagttcatatcaagatgggaagttcagaattggaggaaaccaaggtaccttctgaacctaacaaagagttgtggaaaaagtttttttttttttggaaaatggaacacgcaaatgatgtgctcctgtgtttagaagaactgttttcttcaccttggttctttggttccttgatttgtgccactatttatatggattgtatctgagcagtgtttcattatgttctttgttgagaaagttagccagtctcactctgaaagtactgttcttgctttaggcagtcctgcacatggattgtgaaaagccaccagcaatatcttgggagaggacatttgatgatgaaggaaagaaggttgcaatgtttagcatgaccttgaatgacatgatggcaattgtaagcatttgagcacacagtgcacctcttggttttctgctctgtaagatgcccaaatgaattggttgttcttcaaatttcaatattcaatactgtttgtcaaggaaaagtagtcctttcttttcagagaagagcaagaacactgttattattctaagaaaagttgttaaattaataacatgagcactaactttgtttaatattgttatttgtttcttttgcatatttagcaaaaagggcaacgacactcgttgctttcaagaaaagtagtctaaattaggtattagcagtgaagcattccatttgcaatgaagtcatggtgcttttggtattgtaggtgccgttgatgattaaaatgctgggactaaacctgaaagacaatgcaaaaggcctggtgattactcttaccctgttgaagatccagctaatccatcaataattgttttgcaggctgttgaaatatcagcaggaattgctaaacttactgacaatttttcacttttgcaaaggcttcagtgtatgatccactgaagaaatggatggacaactgctaccgcggtgtacccctcggtgggattgggtaagcaaattaagcctttcctactaaaaattcagctaagtttccttactatctacgattaggaactatatcaagatattctattaccttttggtcatagctaaatttgaattcattgaacaatagatgacaactttgttcaaagcacactgttttatcagtgcagggagcatagggagaagctacaggggatattttcagcagtttcagatattccccagtatatatgaagagaagcctatcctagcaaatcaattttcagttagtgcttttcattttgtatttctaatataaaatgaacattgatggtaatcctagaaatcctctaatcatcacgatcatggttcaattgtataggcattcatttcgcgccctgacggaaagagatactcgacagtgttgtcggcaccgaatgccgatgtcctcaagtaaacaacaaaatttatatcaaagcctatttgaatgcatctttgcatgctaggaatatcatgaaatgtgaaattttcaggggaatcgataaagctggcattggatcctgggactggaagctgaaagagaagaattgcacttaccatggcttgttcccaagatcatggacagtatacaatggtacacactgatttcttatagtagtatcactagaccattgatcacgaatcctggaaaaacatcaattgtgcaaatccttactaatctgagctctaaaattgcaaacaatgcaggtgaacctgaccctgaaattaaaataacttgccgtcagatatcaccgttcattcctcacaactacaaggagagcagcttccctgttgcagttttcacttttacggtacagttcttacaatcctttttgtttctgctgcagatgaaaataactccaattgatctgttcattttgttttctctgaacttctgttcctgtgcatgcagttacacaattctggaagcacacctgcagatgtaacactgctcttcacatgggcagtaagtgcaaaccaacacctagttcttcataaaacaaagacagcattttccagtaaaaacctcaccactggcattgttcatcatgcagaattcggttggagggaaatctgaactgaccgggaatcataagaactccagaatgacgtaattactgatcttgccatcatgtctctcaccaattttaatcagttaattcatggactcgttgcttcttgcaactgtgctgatctttcttgcgcagagctcgcgacggcgtccatggcgtcctcctccatcacaggtgcgtagttcatcacctcatcatgctctcgtgtcggaaactcttttgcaaatgagatgatgacatgtcgtcgatcgatggatgcaggacggcggatgggcgccctccggtgacgttcgcgatcgcgtcgcgggagaccgacggcgtccgcgtcaccggctgcccgcgcttcacgatgggaccatccaactccggcgatgtcacggcgaaggacatgtgggatcagatcaacaaggtacggaggacggacaccatgcatacgcttcactgtcagtctctgacaggctgacgaacactgcatgttcgcggcgaacagaatggttcgttcgtcggggacggcaatgcggcggcggcggcgacgggagcgtcgaggcccgggtcgtccatcggagcggcggtggcggcgacgacgacggtggcggcgggtggcgcgcgcgcggtgtcgttcgcgctgtcgtggtcgtgccccgaggtgaagttcccggcggggagaacctaccacaggtgaagtgacactgtgacagtgacacagctcatgctcatcagcagccagcaatggcgattctcttgttggttctttgctgtttctgaaattctcgaacactgacatgatgagatcgtctgatcatggctggagcaggaggtacaccaagttccatggcaccgatcgcgacgcggctgctgagcgcctggcccacgatgctcttcttggtgaagataacaaatttaatttctgaatttacgcaagagtcaggagtttgttgtctgaagattctgacgacgaatgtttggtgttcttgtctgcatgtagaacacatgaaatgggagtcccagatcgaggagtggcagaggcctattctgcaggacaagagcctacctgaatggtgatcgaatttttcagattttgcatatcaattactaatcactactccctcagtccaaaaaaactcaacctagtatttcgatgagacataatctagtacaacgaatctagacaaacttctaggttgagtttttttttacggagcaagtaattgactaattggattagtggtcgttgatggtaatgttgtttttgtcaggtatccaattacactgttcaacgagctctactacctcaacgctggaggcaccatttggacaggtcaatataatcttctgcacccaaattcttaaacatccattctgaaagtccaaaataacttgatcactgatctgaaacccaaaacgattcagaaacttgaaactgaccaagaaaacaaaattgtcacagatgggcagcctccgaagaacaccagcctttcgtcagcgactgagccgttcaacctcgacacgttcagtacagtcgccaacggcggcagcgcggtcgacggcattttgagcacggtggcggtggcggcggcgcggtcgaacacggcggcggcggcggcggcggcgatgggcacggcgctgctgcgcgacggcgaggagaacgtggggcaggtgctgtacctggaggggatggagtacaacatgtggaacacctacgacgtccacttctacgcctccttcgccctcctctccctcttccccgagctcgagctcaacctccagcgcgacttcgtccgcggcgtcctcctccacgacccctgcctccgccgcacccttgacggcgccaccgtggcgcgcaaggttcatacatcctctaccattcagtactccttccgtcccattttaagtgcagctgtggttttccgtattcaatgtttgagtcttagaaaaaattatgtgaataatatttttattgtttttagataataaaacataaacactaatcacatatttttttcaaataatacagatggtgaaatgttaaacacgaaaaaccacaattacacttaaaatgagacggagggacaagtattaagtttcatgcactgattagtaaaaatataaaaggttcatacttcctctaccatttagtagtattgagtttcatacaccgatgaataaaatatatacttcatccatttctaagactttatgttagaaagttttataatatgaaacgaagggagtatataaaaatacagtaattttaaggttttatgtatcgactaataagacatgaagttatacgtcggtattatgcttcatacgtcgatcaattaaacgtaaagagtatgttgtatattgagttatatgagtttatcggttaggcgtgaagagtacgttatattgagttgcatgcattgactagtttggggtgtcaaaaatgcaggtgttgggagcggtgccacatgacatggggctgaacgacccgtggttcgaggtgaacgcgtacatgctgcacgacccggtgaggtggaaggacctcaacccaaagttcgtgctgcaggtgtaccgcgacgtggtggcgacggggaacgccggcttcgcggaggcggcgtggccggcggtgtacctggccatggcgtacatggaccagttcgaccgcgacggcgacgggatggtcgagaacgagggccgccccgaccagacctacgacctgtggtcggtgtccggcgtcagcgcctacaccggcggcctctgggtggcggcgctccaggccgccgcggccatggcgggcatcgtcggcgacggcgccgccgaggcctacttccgggggaggtaccaccgcgccaggcgcgtgtacacagacgagctctggaacggcggctacttcaactacgacaacagcggcggcgccaccagctcgtcgatccaggccgaccagctcgccggtcagtggtacgcgcgggcgtgcgggctggagccgatcgtggacggcgacaaggcgcggcgagcgctggcgacggtgctcgactacaacgtcatgcgggtgaagggcggcgccatcggcgccgtcaacgggatgcggccggacggcgccgtggacgcgtcgtcgacgcagtccaaggaggtgtggcccggggtgacgtacgccgtcgccgccgcgatgatccacgaggggatgccggaggcggcgttcaagacggccaagggcatccacgacgccggctggggcaagcacggcttcggctacgcgttccagacgccggagtcgtggacggccgacggcggctaccgggcgctgcactacatgcgcccgctcggcgtctgggcgatgcagtgggcgctgtcgccgccggtgctccacaaggagcacagggtggcggcggtggcggcctcgccggaggacgccgcactggggcaggagaagttcgacaaggtagcgagcatgctgaggctgcctgaggagcagcagcacaaggggatccttcgggcgctctatgatactcttcgccaattgctgctcccatcatgatcatgagtcatcatgatcatgagtcataacaactgatgtaagattatcattgcaattgaattacaactggaatacgctttggttccagatttaattagtt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0111200, RefSeq:Os08g0111200