Os08g0244100

From RiceWiki
Revision as of 20:46, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os08g0244100

Description

contains InterPro domain(s): IPR010989

Version

NM_001188535.1 GI:297726200 GeneID:9268458

Length

4061 bp

Definition

Oryza sativa Japonica Group Os08g0244100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:8801824..8805884

Sequence Coding Region

8802677..8802702,8803022..8803193,8803740..8804429,8804548..8804662,8805347..8805429

Expression

GEO Profiles:Os08g0244100

Genome Context

<gbrowseImage1> name=NC_008401:8801824..8805884 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:8801824..8805884 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcggcgggagggctggagcagtggcagaaggacgggttcttccaggccgccgaggaggtgcaggagtcggcggacttgatggaatctatttatagaacttggatgcgggaacgcgatagcggagctaatttagaggagctgagcgatttgcaaagggagctgaagacagcattaggaactgcaaagtggcagttggagcagtttgagagagctataagcatgagcaatgataagtattctttggaagagggtacattggccaggcgtcggcagttcgttgtagcaatggaggaccagatttctcaagtagagaaacaaataaatgattactcgattgacaatgataggcgagggctcaactgggtaaagttagatgatgaggaacgagatgatcttgtggctttcctttcagcacctgcacagttatctcaagatacaaagaaaagagacaacacttaccatagtccatcaaaacaaaagaatgcgttgattggcgcgaatgatcccagggacatggctgcaatcagtaaagaccgacataaaactgaagcattatgcagagaaatttcaaatggtcagagtgaagcttgttgtctagccgagcagttaaatggtcacagtacaagcccgagttctggtggtgaacactggaagatcgatatttctgatgataaagacgatgatagaaaattgtcccctaacaaggtcgaggcatcaagtcaggcaactgcattttctggtatcatgaaaaccaccgaatctttcacaagagtaagatggttgaggaatagcttgtggaaagccaagagtgatgaacatcttccgttaagatatgatatgccaaatcacttagactggagggttataaccttattagcacagaggtttaacgggcttactgaaagaagcaggagttgtttcagcggttggaaggaaaactctagagtatctggaaggatgggtggacttcatatacaagggccgcaatacaacactcagtttggtcgttccattcgaataacccttttactggtgttgagcatctttctgattgtgccatttctcgtgtactcagcttga</cdnaseq>

Protein Sequence

<aaseq>MAAAGGLEQWQKDGFFQAAEEVQESADLMESIYRTWMRERDSGA NLEELSDLQRELKTALGTAKWQLEQFERAISMSNDKYSLEEGTLARRRQFVVAMEDQI SQVEKQINDYSIDNDRRGLNWVKLDDEERDDLVAFLSAPAQLSQDTKKRDNTYHSPSK QKNALIGANDPRDMAAISKDRHKTEALCREISNGQSEACCLAEQLNGHSTSPSSGGEH WKIDISDDKDDDRKLSPNKVEASSQATAFSGIMKTTESFTRVRWLRNSLWKAKSDEHL PLRYDMPNHLDWRVITLLAQRFNGLTERSRSCFSGWKENSRVSGRMGGLHIQGPQYNT QFGRSIRITLLLVLSIFLIVPFLVYSA</aaseq>

Gene Sequence

<dnaseqindica>3183..3208#2692..2863#1456..2145#1223..1337#456..538#gtccgagagagagagaaacaacaccaccaccaccatcaccaacgacaccgagacggaaggaagaaggagaagaaggcgagagagagagtagttcacttccctcctctcctctccctctcttcccactctcacgtctcctctcttcccctccgcgaagcaacggggggcgaggcgacggcagcggaggaggaggaggaggcggcggcggcagccgaaaccccaagaaaacgccgcccctttttctttctttcttgccttgcacagcctcctcctcgatccgtcgcgcgttcgtcgggcgagatccctcctcctcctcctcctcctcctcctcctccggtttcccccgcgtgcgagattgagcctggaagcccattcagcggcggggttggggcggcaggcggctgtgaggttcttgatttgatctgtggttgttgttgaggttgtggttgggcgccatggcggcggcgggagggctggagcagtggcagaaggacgggttcttccaggccgccgaggaggtgcaggagtcggcggacttgtcagtgcttcttctcttccttccttccttttcttgtcctgtcatgtgtgttcatctggggttgaaccgagattggattttcatgttcgttcgtcgtagagagatttgattgatttttgtgtgtgtgtgtgtgtgtgtgtgttatttactttgggaagatttgattgatttcagcgcgtgactgctggtgtattcggtgatgcgtttcttcttgctcgtgtgttttggtgttatatgtgtttgttaggggattatgggtggttgtggctgcaaataagatgaggttttgatgaatgtttgttggtaaattttcttggatggagtctttcctggtttggttggtgaactactgttaacattgtgcagtactctgtcttctttgttgacgtcagtgtgcgatatcaatatattagagttatttaatggggattttatttctctacttatgagatgctatgaatttttggtgatttatccattctggttttgatttatctcttctatatttatatggtttggtggcgggtgtgttccccagtcaaattgttatatattgttcaactagacaatttgtgcttgatatattaccatatggagaatgattatttattagctgttaaggatgtggaggtttttcctagtttgccatgccaagttcttaactttggtgaattcttctttcaggatggaatctatttatagaacttggatgcgggaacgcgatagcggagctaatttagaggagctgagcgatttgcaaagggagctgaagacagcattaggaactgcaaagtggcaggtgtgttttgtcctaacatttagttgttgacttactcctacattcattctatattcattcatgtggtagactagtttatccattgtcttgctaatggttggtagtgtccgccttgcagttggagcagtttgagagagctataagcatgagcaatgataagtattctttggaagagggtacattggccaggcgtcggcagttcgttgtagcaatggaggaccagatttctcaagtagagaaacaaataaatgattactcgattgacaatgataggcgagggctcaactgggtaaagttagatgatgaggaacgagatgatcttgtggctttcctttcagcacctgcacagttatctcaagatacaaagaaaagagacaacacttaccatagtccatcaaaacaaaagaatgcgttgattggcgcgaatgatcccagggacatggctgcaatcagtaaagaccgacataaaactgaagcattatgcagagaaatttcaaatggtcagagtgaagcttgttgtctagccgagcagttaaatggtcacagtacaagcccgagttctggtggtgaacactggaagatcgatatttctgatgataaagacgatgatagaaaattgtcccctaacaaggtcgaggcatcaagtcaggcaactgcattttctggtatcatgaaaaccaccgaatctttcacaagagtaagatggttgaggaatagcttgtggaaagccaagagtgatgaacatcttccgttaagatatgatatgccaaatcacttagactggagggttataaccttattagcacaggtataactactaaccctgctgagaggagttattgtagatgaaagaattaaagaaataaaccccccccccccccctgttttgcatttacttggtacctttgactgaaatgtcctccacaaatacttgacacaatgctatccccaatgcaaacattaccattttacccttctagctgcctagagaaggatataaagtccggcgtgcgcgccaaatgttgcctcttttaaaaatttaaactatttctaatccactggttattagcgacaaggggttattgttagtgtgtgcacccaactagcataggtaccaacaagaagacataacagtagcaactgcatctttttctcccggaggtcaacacaggtgcattttcgccgttctcttgtcacaaaatacacgtgtagcagtaaaaagtgccaagtaaatgcaaatggacggaggataaagtttcattatgctgtctaatttgatttaaataaacaagtcatatgactttagacttttagctaattttcaacatatgtgccctttgtcattttcttacagaggtttaacgggcttactgaaagaagcaggagttgtttcagcggttggaaggaaaactctagagtatctggaaggatgggtggacttcatatacaagggccgcaatacaacactcagtttggtcgttccattcgaataacccttttactggtgttgagcatctttctgattggttagtgtcaaacttgccttccttctacctttacaaatgcatttttcactcctagattgtatccacattcagaataggaaagagtaattgatacgttatgattttggaacatcttttgtgttttgtcctatcctgcaccgatgtctccatttgtgcaggttttgcatgcctatcgaaccgtcatatatctgttttatcatcataaatataccatatactgcttcagatacatatactttaggatgatttcatgtttctatatgatataaatcattgtactgttctatccattctaataatttaattatgtcatatgcagtgccatttctcgtgtactcagcttgacaatgctcatattggtggctgctggtgaaggaaaaagtatccgttattgtacttgcaaaccgtggttggtgttattcacatgctcagatgaaacaaacgagcgggtaattacagatggagctgtacataggaggggaaaaagaaacaaaacgggaacgacttcatttgtggagaggaaaaagaaacaaaacgggaacgacttcatttgtgcaatgcaaaatttccaagatcagaaaacgtgttgtcaccagcagaaaatcatcctgagatggatccatagttaatggctatttggagtctgttgtgatggatgattcattgattcctgccaatttctccttgctgctgtaccctcaccaaggcaattgtaaaaaaaaaatgtagagctgttgggaaatggatttgaacgactattgtgaatgatttatacaatttgtggaagtgaacagtttcggtgaaatgaactgtttggctgatctgaaggcatttcatcagaaaaaaacattcagaagcatgcgagattctttgtccacaggtgattctgtaacaccttgttcccccctaattcttaaaccgtacttgaggatttgtagatagtatatcgcccttgcttgtcttaccattagcagtagtataattaatctggaaacgaagagttcatctgtataagaacatttctgtatagatagcagtcccagcttgtgtatggcttctctgctcacttctaacactcaccactcgtgtcagtcctacctagttgaggcagaaaaagaacacacttgtagatcagagatgacaatgtatcggatagtacatctagctcgggtatcctatctattaatgaggatgtagt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0244100, RefSeq:Os08g0244100