Os08g0486100

From RiceWiki
Revision as of 20:51, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os08g0486100

Description

Similar to Potential copper-transporting ATPase PAA1 (EC 3.6.3.4)

Version

NM_001068628.1 GI:115476993 GeneID:4345883

Length

2206 bp

Definition

Oryza sativa Japonica Group Os08g0486100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:24125060..24127265

Sequence Coding Region

24125062..24125139,24125881..24126084,24126250..24126330,24126543..24126782

Expression

GEO Profiles:Os08g0486100

Genome Context

<gbrowseImage1> name=NC_008401:24125060..24127265 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:24125060..24127265 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>agtgtgtatatgttgtctggggacaagaaaagtgctgctatgaatgtagcttcacttgttggtatccaggcagacaaggtcattgctgaagttaaaccacatgagaagaagagtttcatatctgaacttcaaaaagagcacaagctagttgccatggtcggtgatggcatcaatgatgctgcagcactagcttcagctgatgttggcattgctatgggtggaggtgttggtgcggctagtgatgtgtcttcagttgtgcttatgggcaatagattatctcagcttgttgatgctttagagttgagtaaagagaccatgaggacagtgaagcaaaatctttggtgggcttttctgtacaacattgttggactacccatcgctgctggggcattgctgccagttacaggtacggtgctgaccccgtcgatagctggagctctaatgggttttagttctgtcggcgtaatggccaactcactgttcttgagaatgaggttgagttcaaggcagcaaccaatccataagccacaggcgaccatttctgatgtattacccaacgcagccgagtcagagaaaagttatccatcaaaatggagtgcctag</cdnaseq>

Protein Sequence

<aaseq>SVYMLSGDKKSAAMNVASLVGIQADKVIAEVKPHEKKSFISELQ KEHKLVAMVGDGINDAAALASADVGIAMGGGVGAASDVSSVVLMGNRLSQLVDALELS KETMRTVKQNLWWAFLYNIVGLPIAAGALLPVTGTVLTPSIAGALMGFSSVGVMANSL FLRMRLSSRQQPIHKPQATISDVLPNAAESEKSYPSKWSA</aaseq>

Gene Sequence

<dnaseqindica>3..80#822..1025#1191..1271#1484..1723#ttagtgtgtatatgttgtctggggacaagaaaagtgctgctatgaatgtagcttcacttgttggtatccaggcagacaaggtaatatcgattgttttttgcactgctgacgtggcaatttcattcatgtgaatgcatcatttatccagttttctccagtaaagcagaaaatgttccacaatacgtattacatgaaaaaattttacaggaatgaacatgttaagtgtccctagctatattttttgctgccatttggaaccatgtacatgactttgtaatcttagaagacatcactgatgtctgatgatatggttctctatcaatttttgagacgactaaatgcttcagaagttttacctgctagtattatttacctgagaacatgactttgttgctcattaaattatcccatcatgtagctttataagtaggaactatttcatatttatcttgacttttgattatggactgttcaatttcacgtaggatacagttgaaaatgtatccttttttttttttgccagaagcaaggcccctccttcccctttcattaaatggaaaagacaattcatagataacagagtgcagatcaatctgagacctccacaagcgatccttggttgtaaaatatgaaagagcggcatatatgccaatcatgggacaatgtgtggcagtaggcttttgaatatttgaacatagaaatatatcttaatgaaatcaattgaataacgaaaaggaagcacagtaatatatctcgaatattcattcattatgatttgttatgttttatttattttgtgtatgcaactgaatgtgaatcaggtcattgctgaagttaaaccacatgagaagaagagtttcatatctgaacttcaaaaagagcacaagctagttgccatggtcggtgatggcatcaatgatgctgcagcactagcttcagctgatgttggcattgctatgggtggaggtgttggtgcggctagtgatgtgtcttcagttgtgcttatgggcaatagattatctcaggtaatctcatatgcaacaatttgaaatttgcgaattcttaagcatgaaaaatccactgttttgtattcttggtattgctgccagactcaattaacttttactttttgtatgccgatttaatctcttcttttcctgaaaaaaaattcgagtcttcttgtcatgcagcttgttgatgctttagagttgagtaaagagaccatgaggacagtgaagcaaaatctttggtgggcttttctgtacaacattgtatggttccctttcttactttgtcttctcttctccacggaacaatatgcattcagcaatatgtacaaattgtgtggcctagataggttatcaactaatcgtgtagctgggcctgaatttcgagaaactaaaacttccgaagttattacttattaggttggatctgttttatcctcttcttgcaccacctcatataattgagtgctttgcaggttggactacccatcgctgctggggcattgctgccagttacaggtacggtgctgaccccgtcgatagctggagctctaatgggttttagttctgtcggcgtaatggccaactcactgttcttgagaatgaggttgagttcaaggcagcaaccaatccataagccacaggcgaccatttctgatgtattacccaacgcagccgagtcagagaaaagttatccatcaaaatggagtgcctagctgacatccatttcttcatgaccggctgacctgctttgccttaaagagttcatagcagtaacacgcgtcgcagagaaaacacagtaatttggcccggaactggatgtcgtgataggtagtcctgtctcggagatcagatgcagtcataagaacaaaagaataatcagataaagcacagggttaggagagttcagctgccgcgtgttggtgttttttttttctttgaaaagagtattgagtatgctagtatacaggtacaggccgatacttcacacacgagggcaacatcctctccgatatgtggtacttctttcatgcatagtatttgctatgctgtaacgtttttcctctgataaaaaacactattgacgagtgaaatgacggtccgcgtaccagaactcatgtggtggcgtctcttagatactgtgtagagtcgatactcttctgaattcattctcaattgttaaccatggtgattcgcac</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0486100, RefSeq:Os08g0486100