Os08g0559400

From RiceWiki
Revision as of 20:54, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os08g0559400

Description

Similar to Cyclophilin-like protein

Version

NM_001069037.1 GI:115477812 GeneID:4346316

Length

2546 bp

Definition

Oryza sativa Japonica Group Os08g0559400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:28087801..28090346

Sequence Coding Region

28088095..28088140,28088678..28088762,28089354..28089487,28089826..28089887,28089983..28090078
,28090199..28090270

Expression

GEO Profiles:Os08g0559400

Genome Context

<gbrowseImage1> name=NC_008401:28087801..28090346 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:28087801..28090346 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtggggcagcgccgacggcggcacgccggaggtcaccctggagacatccatgggcgccttcaccatcgagatgtactacaagcacgcgcccaagacctgcaggaacttcctcgagctctcgcgccgcggctactacgacaacgtcatcttccatcgcatcatcaaggatttcatcgtgcaaggtggggatcctactggcaccggaagaggcggcgaatccatctacggagcaaagttcgaggatgagattaggccagaactgaagcacaccggcgctggaattctgtcgatggccaacgctggtccaaatacaaatggaagccagttctttattactcttgcgccttgtcagtcacttgatggaaagcatacaatttttgggagagtatcaaaaggaatggaaattgtcaagcgccttggaagtgtccagacagacaaaagtgataggcccatccatgaagtgaaaatcctgcggactgtggtcaaagattga</cdnaseq>

Protein Sequence

<aaseq>MWGSADGGTPEVTLETSMGAFTIEMYYKHAPKTCRNFLELSRRG YYDNVIFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIRPELKHTGAGILSMANAG PNTNGSQFFITLAPCQSLDGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKILRT VVKD</aaseq>

Gene Sequence

<dnaseqindica>2207..2252#1585..1669#860..993#460..521#269..364#77..148#cctcctccgaagagagagaagggaatctctcctcttctcttctcttctcgcgccgccgccgtgtccagtgcccaagatgtggggcagcgccgacggcggcacgccggaggtcaccctggagacatccatgggcgccttcaccatcgaggtaccattggctcggctcggctcggccgtctctctcttgagctattcttttcgtcggcatacaccgagttaagttcttgctccttgatttgatttggtcgcttctctcgtcgatcgacagatgtactacaagcacgcgcccaagacctgcaggaacttcctcgagctctcgcgccgcggctactacgacaacgtcatcttccatcgcatcatcaaggtttctgcccactccttgcttgctgctttgcttaataggagtattaatcaatccggtcaggttttctttactgcttttatcttcttgcggtttaggatttcatcgtgcaaggtggggatcctactggcaccggaagaggcggcgaatccatctacgggtcagcatatttcttgctttcctcctctttcaatttgtaagattgcattgcaactgtaacactcgattttgaactgtattttgagctcacatcatcaacccatgatggatagcactgtatttctacctgttaaaaacataatagggaattagtacctattgtgtagcagcatttggtagcgattgtaccattgttgctgggctcctgtagcatcttgtttgtaaaagtagctaaatttattattccttgttattttccacgccacgccgttattgcattctatttggggctctgtttgaatccttacaaatgtttgtgttcttgctgtgtttttacagagcaaagttcgaggatgagattaggccagaactgaagcacaccggcgctggaattctgtcgatggccaacgctggtccaaatacaaatggaagccagttctttattactcttgcgccttgtcagtcacttgatggtgagtctaccgtactgtctcattgttgctccagttttacattatgctttcgcttgtttgctgtctatgaatgttctttgcattgccctggaaagctgaagttcactctgtaggagttaatcaacaatttctcagattgcaacctaaaaactttactatcaaatcactgcaagtttttttttaatattagatttggaataattacaagaaaaacttgggactagcttttgaagagcctgttgtagagtgactttgagtctagtgcaatcactaggagcgtgattcttggagacttctggtggatttctgggactcctgttcttctgtattgtgatgttggtacattggactgcattgttgttaatgtgtaatgcaattgtgaaggacttctgctagcaccatcactgttttttcttcctaattgccaaccctggaagattttgcccctcaggatgtcactgcttacatctgtttttgacattgtatttcgcactctggattgcttttacaaatatgttcttttcgaaatttccacattgaaagtcaggtacattttcatgctattaaggttatatggttttcctattccaggaaagcatacaatttttgggagagtatcaaaaggaatggaaattgtcaagcgccttggaagtgtccagacagacaaaagtgataggtaacaccaaaactatatgccatggttgtacatatcacataatagatatagcatccgatttgtcctgagggagagttgagtgagtgcaacgcctcgctattaccatgcatatgcaatggcaaagtaggtagcagggtagcagcaggagggaaatatttgggatgatgagttgcagcgttagtagatttggctaggatctactcccttcgttccacattataagatgttttggcctctccattcgttggctagattcactaacatccataagcagtttagcacatacatggatccatgcattaatctatccaaaactcaaatcgtcttataattttaacttataatgtgaaacggagaaagtattcatcatggtagagaacaatgagagctgcgggtgagtgagggcgaatggtgggagggagataaccaaatcatgtgtacaatccatgtatggtgcctgtaaaactgaaagggaaaatgatcgatatgcatttttcctgtcgaatttattcagacttgttatctttgttgattcaggcccatccatgaagtgaaaatcctgcggactgtggtcaaagattgaggcacagcgggtctactcggtgtcactcatgacttctggtatttggagttgtagctgctgtcagtttcaggaattgtttcctgcttgttccgtgcttatgcagtggtgtatcgtttcggatgggctagtttagttattaacaactcatgaatcgtgatccgtcttaattattctcacctgaacgagtagtgttcagtgattatcagtggaaataactttcgaaatatatgaagtcattttgagcgcatgatgtaattcagctgatattcagcatgttacatgctgtaccaactc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0559400, RefSeq:Os08g0559400