Os09g0491788

From RiceWiki
Revision as of 21:01, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os09g0491788

Description

NAD-dependent epimerase/dehydratase family protein

Version

NM_001188990.1 GI:297727110 GeneID:9272624

Length

3878 bp

Definition

Oryza sativa Japonica Group Os09g0491788, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:19648255..19652132

Sequence Coding Region

19648508..19648697,19648811..19649000,19650969..19651134,19651410..19651595,19651679..19651848
,19651947..19652076

Expression

GEO Profiles:Os09g0491788

Genome Context

<gbrowseImage1> name=NC_008402:19648255..19652132 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:19648255..19652132 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacgcctccgcctccgccgccgcggcgccccgtgtgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcctctcccgtggctacgccgtccacgccaccctccgcgacccagatgatcccaagaacgcgtttctgaagcagctggagaacgctccggagaacctgcgcctgttcaaggccgacgtgctcgacggcggctcgctgacggcggcgttcgccggctgcgagggggtcttccatccggccactcccgtgccggaacacaagacggtcgatccggagaaggagatgctggctcctgctgtgaaaggcaccagaaatgtgctcgaggcttgctctgctgcgagcgttcagaaactcgtcgtggtctcatccatctgtgctgtttgctttaacccgagcttgcctcgagacaggctcatagatgagacttgctggtcagacaagaagtcatgcaaagaaaatgagaactggtactgtcttgccaagaccgaagctgaagagatggccctggaatattcagagaaaaatggactgcatgtcattacggtttgccctggcgttatctttgggccactgttgcagactgtgctactcaacaccagcagcaaagttctgctctacatcatgaaaggaggccctgatgcactaagcaacaaattctttcccatagtcgatgtccgcgatgtcgccgatgctttacttctagtgtacgacaaggcagggccatctgagcgatacatctgttctcaagaacaaatggacatgagggatttgttggatttgatgaagagcatgtaccctaactacagctacacagccaaagtggttgatgtggatatgactacgagtgttgaattgacatcagagaagctgaagaagctgggctggaaacctaggaaactcgaggagacgcttgtcgacagcgttgaatcctacaagaaggcaggctttgtagatgacgaaccttgccggcttccccatctttaccgtgcaccagatgctcaggagtga</cdnaseq>

Protein Sequence

<aaseq>MTPPPPPPRRPVCVTGAGGFTGSWLVKLLLSRGYAVHATLRDPD DPKNAFLKQLENAPENLRLFKADVLDGGSLTAAFAGCEGVFHPATPVPEHKTVDPEKE MLAPAVKGTRNVLEACSAASVQKLVVVSSICAVCFNPSLPRDRLIDETCWSDKKSCKE NENWYCLAKTEAEEMALEYSEKNGLHVITVCPGVIFGPLLQTVLLNTSSKVLLYIMKG GPDALSNKFFPIVDVRDVADALLLVYDKAGPSERYICSQEQMDMRDLLDLMKSMYPNY SYTAKVVDVDMTTSVELTSEKLKKLGWKPRKLEETLVDSVESYKKAGFVDDEPCRLPH LYRAPDAQE</aaseq>

Gene Sequence

<dnaseqindica>3436..3625#3133..3322#999..1164#538..723#285..454#57..186#acagttgcaggcttgcagcagtggtccagtggatacggaggtggtggcaaccggagatgacgcctccgcctccgccgccgcggcgccccgtgtgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcctctcccgtggctacgccgtccacgccaccctccgcgacccaggtctcttcttgagttcttattttttctgttctttcctagtatcctcttgtgctgcatcttcttgtatgtgggtttctttatccttttcctggtttcagatgatcccaagaacgcgtttctgaagcagctggagaacgctccggagaacctgcgcctgttcaaggccgacgtgctcgacggcggctcgctgacggcggcgttcgccggctgcgagggggtcttccatccggccactcccgtgccggaacacaagacggtcgatccggaggtaaatactccatttacacacacacttctctgcaatctgcagttcttctgctgatcctatgtttgctaaacacgattgttcagaaggagatgctggctcctgctgtgaaaggcaccagaaatgtgctcgaggcttgctctgctgcgagcgttcagaaactcgtcgtggtctcatccatctgtgctgtttgctttaacccgagcttgcctcgagacaggctcatagatgagacttgctggtcagacaagaagtcatgcaaagaaaatgaggtcagaaattggcctctcttgcttttctctatcgttagtttttccttgattcatcagttagttattagggatgattgctagaaagtagctaggattaatttattttgagcaaaatgttgccaaactagtgttctacagatagcagcttaacacttcagagttcagacaactgcaaaaagaaaagggggaaaaaaagctcttttagcctttcgttggatttcctggttaatagtagctaggattaatttatgaacctcaaattcttgtgttggcagaactggtactgtcttgccaagaccgaagctgaagagatggccctggaatattcagagaaaaatggactgcatgtcattacggtttgccctggcgttatctttgggccactgttgcagactgtgctactcaacaccagcagcaaagttctgctctacatcatgaaaggttcacctcaccctcttttctcaatggagagaaactagagcacgctatcccgtccgaacggcatagttagaccttgtttagttcccaaaataaaaacttttcacccatcacatcgaatgtttggatatatgcatagagtattaaatgtggattaacaaaaaccaattacacaattagccaggaaattgcgatacgaatcttttaagcctaattgcgccatgatttgacaatgtggtgctacagtaaacatttgctaatgacggattaattaggcttaataaattcgtctcgcggtttactgacgaattctataattagtttttttattagtgcccgaacaccccatgcgacaccctatataatacccgatgtgacacgccaaaactttacacccctgaatctaaacactccctaactttcaagcttcatgtataattttgatagatgggacgactacagagctaggccacatgctctgacatgcctatgtgctaggtggcttggatggagtcgggccaatatgtaatggatagatgctcttcgttatttctttttttttataaaatagggaatgagagctaggctgaccaattaggttgagtcacctagattgatacatgtgatgatactaatatttggagatacatatcatgtctatttgtatcaaacttgttggtgctcatgggtatctgacatggtaattatgtcctagatatggtaccgtattggacttggttactaggtatcggaaatggtatccataggtatcagacctgaggtctcaaatatggtaccataagtactattagacttggttactaggtatcagatatggtaccataggtatcagacctgaggtctcaaatatggtaccataagtatgggacttggttactaggtatcggatatggtaccataggtatcagacctgatacctaggtaccggatatggtatccacgaatactagacttgatacctaagtatcggatgtgatacccacgagtatcagaccaagtacgtaggtattgaacatggtaccaataggtatcaaacatggcacttattgtatcggatatgatacttatgggtctcagactaggtacctagatatatatcaaagatagtaatataggtatagtatcatgtttggtacctaggtaccgattaattgagatgaaaattagaaggtttcatcttaaaaaaacaaaatcaaaaaataagaaagaaaaggggacaatttagtgactttcccctcatcggtgctgcttcaatagtacaacgtaacaaatttctaaaaaattttgtagctgcatgccaagctagggtccattttatatgtggacatcaatggaaatccggagggcccatgtcatctcatccgcacatattcaacatggaccctacttctcgtcattttttatcttcccgagctatccgtatgagaagtggaaagttgcttgtgatttgtgagaatgcatgtgtcagatcatatgcaagcagggagcaggttctattaaggccctgtttagttctcgaaaagaaaatttttaggaattacatcggacgtttgaccggatgttggaaggggttttcggacatgaatgaaaaaactaatttcataattcgtctggaaaccgcgagacgaatctcttgagcctaattaattcatcattagcacatgtgggttactatagcacttatggctaattatggattaattaggcttaaaatattcgtctcgcgattttcatgcaaactgtgcaattagtttttctttaatctatgcatgtgtctaaagatttgatctgatgtttttgggaaaaaaaattggggaactaaaccgggcctaactataccgtgcaaacggtatctgttttctagcttttctcaatggtttatagtttctacagtttttgtttgttctggtgattggtgcactgattccatcagttttggttgcaacgcaggaggccctgatgcactaagcaacaaattctttcccatagtcgatgtccgcgatgtcgccgatgctttacttctagtgtacgacaaggcagggccatctgagcgatacatctgttctcaagaacaaatggacatgagggatttgttggatttgatgaagagcatgtaccctaactacagctacacagccaagtaatttgccttgtatcattatcatcatcaactatcctattcatgacagagaaactgaaatgacatcaggttattgcatcagtatcacaagatgaacacaattatttttgcagagtggttgatgtggatatgactacgagtgttgaattgacatcagagaagctgaagaagctgggctggaaacctaggaaactcgaggagacgcttgtcgacagcgttgaatcctacaagaaggcaggctttgtagatgacgaaccttgccggcttccccatctttaccgtgcaccagatgctcaggagtgaacagccggcgccgtcttgctgctactgttcttgatctaattgtcactgaaaaaaaaagtttccaataatactgtaatagatgagggatcaggtgttcctgtccagtgtccacattatcatctgctctgttccattagtgaattgattcagcctgtgatcaatgacacaatttatgcctggcaataattgaatattgtctactgattaagatggacaattgtgtgtgtaattttaatatatccgccacccgatt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0491788, RefSeq:Os09g0491788