Os12g0128800

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Revision as of 10:20, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0128800| Description = Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I| Version = NM_001072595.1 GI:115487151 GeneID:4351402...")
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Gene Name

Os12g0128800

Description

Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I

Version

NM_001072595.1 GI:115487151 GeneID:4351402

Length

6675 bp

Definition

Oryza sativa Japonica Group Os12g0128800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:1367899..1374573

Sequence Coding Region

1368563..1368753,1369137..1369258,1369358..1369505,1369882..1369951,1370027..1370172
,1370258..1370303,1370394..1370446,1370612..1370762,1371228..1371346
,1371482..1371553,1372546..1372649,1372944..1373000,1373093..1373285
,1373501..1373644,1373967..1374065

Expression

GEO Profiles:Os12g0128800

Genome Context

<gbrowseImage1> name=NC_008405:1367899..1374573 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:1367899..1374573 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>tgttttgaagctggagccaacacatcaaacattgacccatggtccatcattggagatgaatcctctgttcacgtgacaactgatcgctcatcctgtttcagtcaaaatcctgttgctgtaaggatagaggttgtctgtgacgattgtccagccggtggtgttggaatttacaatccaggattttggggcatgaatgtagaagaaggaaaggcatataatctggtcatgcatatcagatcattagaatcggtggagttgacagcttcactcacatgctcaaatggatcgcaaaatcttgcatcaaattctgttcgagaaactaatttgtcaacttggacaaagatagagctacagttactagctcaagggacatgcagaacttcaagacttgaactaacaactaggaaaaggggagtaatatggcttgatcaggtgtcacttatgccttcagaaacatacaagggccatggttttcgcaaggaactcatgtacatgcttttggacttaaaaccacggtttctacggtttcctgggggttgctttgtcgaaggcaattggttaaaaaatgcattcaggtggaaggaaactattggtccatgggaagagagacctggacactatggagatgtctggcactactggacggatgatggccttgggtattatgagttactcgagcttgctgaagacttgggtgctaaccctgtatgggtgctcaacattgggatgagtcaccatgatgcagttaatggaactatgctcgcaccttttataaaggatgcaactgacagtcttgagtttgcaaaggggagtgacaaatcaacatggggctctgttagagccacgatggggcaccctgaaccattcccactgaagtatgttgcactagggaatgaagattgtgctccattcaagctgatataccgagaaaattatcccaagttctacaacgccataaaagaggcttatcctgacatccaaataatttcaaactgtgatggctcgtctgggccacttgatcatcctgccgatctctatgactaccatatatatgaaaatgcatccactgtgtttttcaagaagaatgaatttgataggacatcacgtaatggtccaaaggtatttgtaagtgagtatgctgttaatggtgaggatgctggcaatggaagccttcttgcatcattggcagaagctgctttcctaattggtttagagaaaaatagtgatgtcgttcagatggcatgttatgcaccactcttcgtgaatgacaacgatcgcgtctggaacccagatgcgattgtcttcaactcctggcaacagtatggaactcctagttattggatgcagacatatttccgtgaatcaagcggtgctatgattcatccaattatgatcagttccagctactctgatttattggctgcctctgcaatcacctggcaagacgctgagaatacctttctgagagtgaagatagtaaacttcgggccaaatgctgtgaacctcacaatatcttcaagtggacttcaagctggtgtagatacggcaaaatcaactgtgactgttctcacatccagcaacttgctggatgaaaattcatttagtgaaccaaacaaggtcgtgccagttgccagcgagttgccgaatgcagcagaacagatgcaagtcttacattttccttactcaatttgttcgtttgatcttgctctggtttag</cdnaseq>

Protein Sequence

<aaseq>CFEAGANTSNIDPWSIIGDESSVHVTTDRSSCFSQNPVAVRIEV VCDDCPAGGVGIYNPGFWGMNVEEGKAYNLVMHIRSLESVELTASLTCSNGSQNLASN SVRETNLSTWTKIELQLLAQGTCRTSRLELTTRKRGVIWLDQVSLMPSETYKGHGFRK ELMYMLLDLKPRFLRFPGGCFVEGNWLKNAFRWKETIGPWEERPGHYGDVWHYWTDDG LGYYELLELAEDLGANPVWVLNIGMSHHDAVNGTMLAPFIKDATDSLEFAKGSDKSTW GSVRATMGHPEPFPLKYVALGNEDCAPFKLIYRENYPKFYNAIKEAYPDIQIISNCDG SSGPLDHPADLYDYHIYENASTVFFKKNEFDRTSRNGPKVFVSEYAVNGEDAGNGSLL ASLAEAAFLIGLEKNSDVVQMACYAPLFVNDNDRVWNPDAIVFNSWQQYGTPSYWMQT YFRESSGAMIHPIMISSSYSDLLAASAITWQDAENTFLRVKIVNFGPNAVNLTISSSG LQAGVDTAKSTVTVLTSSNLLDENSFSEPNKVVPVASELPNAAEQMQVLHFPYSICSF DLALV</aaseq>

Gene Sequence

<dnaseqindica>665..855#1239..1360#1460..1607#1984..2053#2129..2274#2360..2405#2496..2548#2714..2864#3330..3448#3584..3655#4648..4751#5046..5102#5195..5387#5603..5746#6069..6167#agccgttggatggccatccaacggttgatggatcgtcttcaacctccagctcatggctactctctctctctctctctctcctcttgaacgattccctcctgcctcctccctccccgcacctgcacctgcaccatctccggcgtctctcgcggccggatccgccgcctcctcacccaccgcccaaggcctcccctccctgtatacgaagccccgatgaactgctcctccctccacaacccctctataccccgccagatccactccacggccccaccccaacccaatatcctaatccattcgccctctctcgccggggaagaaagccaaaaggaggaggaggaggctcatcggcgcagggatgctcgggattcaccggccagctcgacctcgttttggtgggggtggtgtgtgtgagagtgagtaacgaaggcttgaggttgaagaagcaacatggatggtttggatttgtgatctactgccaagaatatttggggagaaatcaatcacctcatgtatggcaaatgcaaggatttttgaggagaaatcaaccggctgatgtatagcaatgttgaataagaaaacattttcccccctcaataaataaataaataataatatttggagtttaactttaactgattttttgtctaatttcttgctttaggttttgaagctggagccaacacatcaaacattgacccatggtccatcattggagatgaatcctctgttcacgtgacaactgatcgctcatcctgtttcagtcaaaatcctgttgctgtaaggatagaggttgtctgtgacgattgtccagccggtggtgttggaatttacaatccaggattttggggcatggtatgagttctatccatttttataagtgcattcctatatgaataatatgcaaaatagagcttgtaattgaaagtagtatcctttttttttacgacagtttacaataaacagtgctgccacagaaagaaactatagcaaagttatttattctgttcgaaatggtgaagaaaacaaataattaagctaacctattttttgtttgatttcaatttgcatttatcttttccttgcataatgctggttttttatcagattgttgtgcattgctcttggaaaagtgtaatctatagcttttcttcgaaccgttttcattttaccttctcatattttaatgggattttaccttctggttttgtgacgaatatgatcatttcaattttcagaatgtagaagaaggaaaggcatataatctggtcatgcatatcagatcattagaatcggtggagttgacagcttcactcacatgctcaaatggatcgcaaaatcttgcatcaaattctgttcggtatatattttttccgtaacactgagataaaaaaggtttttcaatctctctcgctcgttcgctcgctaaccgaaaggattgtacatcaaatttctgcagagaaactaatttgtcaacttggacaaagatagagctacagttactagctcaagggacatgcagaacttcaagacttgaactaacaactaggaaaaggggagtaatatggcttgatcaggtgtcacttatgccttcagaaacatacaaggtgcactgtcttttacttttttattgctactgtcatcatagcttgatctggaatccggtatcatcttgtgaagaatggagaatagaattcatgcactgaccccaaagattttagccactacaccatgccaggttcaatggacaccctgttcaaatcatgtctgctatttgatattattcaaacttatttaaaaaggtcatcataaaaattatcaatttattcacattgctatctgacaagaaaaaaaagtaaattaacttatctgtaatcagtaatcccgtagagatggcagatcgagttattgttccttaatctacatttgcttactatgagtccataggagttgttgatcgacatttttcttctacatatgcagggccatggttttcgcaaggaactcatgtacatgcttttggacttaaaaccacggtttctacggtttcctggtatttcgaatgttttccaactggcaatcaatttcggttgccctgtaatttaatcgctcgcattacatttggcagggggttgctttgtcgaaggcaattggttaaaaaatgcattcaggtggaaggaaactattggtccatgggaagagagacctggacactatggagatgtctggcactactggacggatgatggccttgggtattatgagttactcgaggtatgggttgattaatgtgaaatgggttttttcttttggtctcggcatatctcaccatttgtttacttcaaaatgttcatgaaagcttgctgaagacttgggtgctaaccctgtatgggtgctcaacattggtaaatatcgtgtctatttgtcttgttcaatgtatttttaatctttgcacaaaccaacgaactgctcagggttttttatcttgtaattagggatgagtcaccatgatgcagttaatggaactatgctcgcaccttttataaaggtatgttttcgatgccctacattttttgaagtatggatgagatgaagatggacttctcatgatgtaacagaaaacagttgtaacatgtgaatattaacataaggccttgcatttattgtgatcccatgtttcttatttcgagatgctttgattttcttgctacaggatgcaactgacagtcttgagtttgcaaaggggagtgacaaatcaacatggggctctgttagagccacgatggggcaccctgaaccattcccactgaagtatgttgcactagggaatgaagattgtgctccattcaagctgatataccgaggtaaattttgcataataaacaaatagtattgtccttcgtgttaatgctgcgatgattggctaaattcatcattctgttttttatcgatctgcaagggtaatagcactattttatttaacttcaccctttttagtactatctgattgcataatggagatattttggagaaataatagatgaaaaaattggctgcatgccttgtggcagaggccagggatgtaaaatatttccattataaaaaaaataatagatgaaaagaaaaacaagaagttaatttaccagtctgctgttatgtttcgaaacagactttaccagtttctagaaggttcattagttttacatttgattgaggccaaattggctacgacgtataatgctgtttcagtacatttaaatgggctactactatcataaatatcctaattttcccttgatatcatataaccatgtaattctgttgaacagaaaattatcccaagttctacaacgccataaaagaggcttatcctgacatccaaataatttcaaactgtgatggctcgtctgggccacttgatcatcctgccgatctctatgactaccatgtaaacaactcactgagactaatttatttctatcattctccctatttttaaattctgtcttgctggtttttttcagacttggttatgtgatcattttctccatagatttctgagaatgttacatttattctgtagatatatgaaaatgcatccactgtgtttttcaagaagaatgaatttgataggacatcacgtaatggtccaaaggtaatgaatttgatataaagtggcttcttttgggaaattaagttcttttttttattttttttagagaagggtattttttacccggcctctacatccaaccggatatatgcggccattgaaatagggaacttagccccacaaacaacccaatctgaaattcgctccataggagatttgaactcaggaccttgggtactaggagattcgctccataggaaattaagttcttagattagatcagtcttacaaaggcagcttctctcatgcgccattatcctcgacattttcttgaatgaaatatgcttctagttatttcgaaaaaaaagtgtttctaggtattagtttcttccatcttcttccatgactgagactgaatctataagatcagaatatatgataacttgaataatatcccaaactagagcaatctactagtacttcataacttgaactccagatcgcttctagagcaatctgctgtggtattgattgacaacaagcatagttagtaattatgacaacaagcatgttcttcttcttctcttccttttcccatgagaagaagcctaactatcgaatagcaaaacgtaagacgctgttcttccttttcccatgtttgttggatggtttggaaggaaagaaatgcgcgtgtgtttcagaaccagcggcgctcagccggtttcctgtttggttcaatcaaagaggaagtggcgatttggaaggaagctggggttttcagaaatataggagagtagtcccttagtgtaatcttttgcttttgggaggttgctccggtgacaacttccattacttcgacagcttcttgttgaagttataactttgtatatttgtatatattcttcaatcttaagtaaatttggttggcctttcttggccggcccggcaatttattcatctcattaccctttgatgttggatagacagaatataagtgagcaggaaccactgactatgcaattgtttcactgcaggtatttgtaagtgagtatgctgttaatggtgaggatgctggcaatggaagccttcttgcatcattggcagaagctgctttcctaattggtttagagaaaaataggtgatccctctggggatactctcttaattctttatcttgggttcagagtaaatataaaatcatgcgcagagttgtctacttgtatccagaccatgcatgaatataagagatcgttcaatgggattcctggataaattgttgatttttgtttgacaactactacctcatctttgtacttctccacaaggaaaatattttgagtaaatgtataatttgtaaaaatttacattgagcaacagtaattccttattgcaagttattgaattggctctcatcatgcatgcttctttgcagtgatgtcgttcagatggcatgttatgcaccactcttcgtgaatgacaacgatcgcgtgttagtatacatggtcttatactttctttgttcaaggattctagcatctgtttcctctctgactattgctaatgtataaatgtgataaccagctggaacccagatgcgattgtcttcaactcctggcaacagtatggaactcctagttattggatgcagacatatttccgtgaatcaagcggtgctatgattcatccaattatgatcagttccagctactctgatttattggctgcctctgcaatcacctggcaagacgctgagaatacctttctgagagtgaaggtaaaccatccattccagtttcttctaaacttatatgcatttggttcaattcattagacatgcgccttattgtttggaatgatttagttacaacgatacaaaattgattcagccaatgcatacttgcataacatgcatctgtctttatatgtattactgctggagtaatatgtttggatcttagaacatcctgatcttcaaatgatcttccacagatagtaaacttcgggccaaatgctgtgaacctcacaatatcttcaagtggacttcaagctggtgtagatacggcaaaatcaactgtgactgttctcacatccagcaacttgctggatgaaaattcatttagtgaaccaaacaaggtatgaccaattttgctttgatcagtaattattggtttcagactttcattactatgcacagaatttagaagagggtaacttctccattacaaaaatctggtctgttacaattagacatgcaggtggtatgcctcgcatttgtcaagtagtgcgtgctacataaacacctttgtagatatatccctactctgccttttattttgtcatgtctggattatttccttgtctttctaaagaacacagagaatctattgtaacacacgatatctcagggtacgcaagttggtctaacatacaagtttcttgtgaacacgcattgcaggtcgtgccagttgccagcgagttgccgaatgcagcagaacagatgcaagtcttacattttccttactcaatttgttcgtttgatcttgctctggtttagccgtttaattagcacaagtttatcaggctaacatgttgggacgctgtttctgtccttaatgacatcccaggatttcatagtgatcaaaagctaattattccactgtatcagagcccattaggccaaggatggttttaattaaagcttagtttgaacaactcgctttatttataatatatccctttattgcttctaagaaatcatcgagttgtttgtttggatattagtaatgatatgggaattattaagttgaccagataaaaatgtagaatgcatcaaaaaggaacttggtatcaatgagatcacgtctcctttttgtttgatagccatggatatgatgtttctataatatggggatggtgatgagtctctcttttgttttcttgcggtaatgcagctctgttaatttctctattacggtttggcaagatggccggtgtctccggatgtgattttttttgagtaaatttcactttggacctgttttattgaccaaagtttcaccatg</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0128800, RefSeq:Os12g0128800