Os12g0133000

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Revision as of 10:20, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0133000| Description = Similar to Major facilitator superfamily antiporter| Version = NM_001072617.1 GI:115487195 GeneID:4351426| Length = ...")
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Gene Name

Os12g0133000

Description

Similar to Major facilitator superfamily antiporter

Version

NM_001072617.1 GI:115487195 GeneID:4351426

Length

6230 bp

Definition

Oryza sativa Japonica Group Os12g0133000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:1593732..1599961

Sequence Coding Region

1593732..1593823,1594730..1594773,1594895..1594983,1595076..1595120,1595457..1595564
,1595647..1595732,1595872..1595959,1596159..1596335,1596531..1596606
,1596709..1596758,1596834..1596896,1597152..1597254,1597337..1597439
,1597559..1597619,1598119..1598159,1599790..1599961

Expression

GEO Profiles:Os12g0133000

Genome Context

<gbrowseImage1> name=NC_008405:1593732..1599961 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:1593732..1599961 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcagcggcagcgaggaggcggcgccgctgctgctgccggtggcggcggcgacggcgacggcggaggagaggtgcccggggtgcgtgcaggagcggaggaaggcgagccgcggagggcggatcccctacacggagctcttcttcgtcgccgttaccactcttgcctcatctttaccaatcacgtgcctcttccccttcctctacttcatggtaagggacctgcaagtagcacaaacagaggaggacattgggtattatgctggatttcttggtgcttcgtacatggttggtagatcctttgccgcgatattttggggagttgtggcagatcgtataggaaggaaacctgtcattgtgttttcaatattgtctgtggtcatatttaacacattatttgggctaagtacaaagtattggatggcacttactacaaggtttgttctaggtgctctaaatggtttacttgcgccaataaaggttaacacagcatggggtttgggtctcgttgttggtccagctcttggaggctaccttgcacagcctgttgaaaaatatccacatgtattttctaaggagtcagtttttgggagattcccgtatctcttaccttgccttggtgtatcattgtttgctgctattgttctgataagttgtatttggcttccggagactatacataaacataaatctcctgataaggacatcaaaagaatcaaagaattgccattacagcaggcttattgggattcacctcgtaagaagagcttgttccagaatcggccatggatgtctactatgatttcatattgtttttttggtcttcatgacacagcatacagtgagatattatccttgtgggctgtgagtgatagaaaatatggtggccttagcttttcatctgaggatattggtcaggttcttgctgttgcaggtgctagtcttctagcatatcagcttattatttaccactgggttcataagtttcttggaccaatcatttcattacgaattgcttctgctctatctatacttattctttctacttatccttttatgacatacctatctggcgcggaactttccttagctttttattcagcggcaatgatgaaaagtgctcttgcaattactataagcacaggaatttgccttttacagaacaatgctgtgcttcaagaacatagaggcactgcaaatggtgtatcaacaacagctatgtcatttttcaaggcgattgctccagtaggggcaggtgttctattctcgtgggcgcaaaaacgtcaggatgccctcttctttccagcttcagcagcctggacccaggagccagcagcaaagcagctagctgccttggcgtcggagctcaccttcaaggaggagatacggcgggactaa</cdnaseq>

Protein Sequence

<aaseq>MGSGSEEAAPLLLPVAAATATAEERCPGCVQERRKASRGGRIPY TELFFVAVTTLASSLPITCLFPFLYFMVRDLQVAQTEEDIGYYAGFLGASYMVGRSFA AIFWGVVADRIGRKPVIVFSILSVVIFNTLFGLSTKYWMALTTRFVLGALNGLLAPIK VNTAWGLGLVVGPALGGYLAQPVEKYPHVFSKESVFGRFPYLLPCLGVSLFAAIVLIS CIWLPETIHKHKSPDKDIKRIKELPLQQAYWDSPRKKSLFQNRPWMSTMISYCFFGLH DTAYSEILSLWAVSDRKYGGLSFSSEDIGQVLAVAGASLLAYQLIIYHWVHKFLGPII SLRIASALSILILSTYPFMTYLSGAELSLAFYSAAMMKSALAITISTGICLLQNNAVL QEHRGTANGVSTTAMSFFKAIAPVGAGVLFSWAQKRQDALFFPASAAWTQEPAAKQLA ALASELTFKEEIRRD</aaseq>

Gene Sequence

<dnaseqindica>6139..6230#5189..5232#4979..5067#4842..4886#4398..4505#4230..4315#4003..4090#3627..3803#3356..3431#3204..3253#3066..3128#2708..2810#2523..2625#2343..2403#1803..1843#1..172#atgggcagcggcagcgaggaggcggcgccgctgctgctgccggtggcggcggcgacggcgacggcggaggagaggtgcccggggtgcgtgcaggagcggaggaaggcgagccgcggagggcggatcccctacacggagctcttcttcgtcgccgttaccactcttgcctcatgtaatccgttcatttcagctactgcattttttttatatatatactccctccgtttcacaatgtaagttattctagcattttctacatttatattgatgctaatgaatatagacatataaatctataatcaatataaatgtgggaaatattagaaagacttaaattatgaaaaggaggaagtataagcaaatgattttaccagctgcattatccttgcacttcttattagtagttcttacatcttcatccgtctcttaaatctctcctcttttctactgcatgcgcaacactgcaatgcaccaaccatatggtagctatatattgattacagttatcatcgttgttaatgtttctgttcatgcatgttcatcaacgtgaacacatgcatacattgatacatagcactctttccagttataaacacttaaatttaagataagacgtgatcaacttttaaaattttgatcagatcatcaatagtttctcaaatgcttaatttaaaagaaaaaaaatagtgtgtgtaaatttatctggaaaggtactattataaaatcataaatctatcaaaaatttaaaacttattctaacataaatctaatggttaaaaatcaaaaaattaaccaagtcttatcttaaacatccaatatttatggcatcatttgatcatccttagccactagagagatgaagggggcatcgatcatgatgaataaacggtactacaagacggacaaaaggcaggttgcaagttgcaaacttggatctcctactcctaaataaaaggaaataaaaagtaaactaggatgcccttctggtacttgacaaaaagaaaagcataactagcacccaccaatacaaccccaacttgctctcttcttgacaaatcttgatctacatgccaaataaatatatactagtaatatattgccatattgatgcatcctaggctaactatagtatataagaccacatatttacctgttttgagatatgccaaaaacaagtaaatatataatgacatggacccaattaaccctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataagaggagagagaggagaacaaaggagaggatggaggaagaagacgagagaaattttgtccgaaaaatttagaatttgcattgaaagggtatgtagtggtacatcttaaacacatgttaaattatagtggcgtggttccaatttcacaaacagtaatgatatatcacaaaacaggtaaatatataatggcatgatccaattaaccctatatatataggagtacttgtggagccgcttgaattgaagctcaaacatgcatgtaaaatttgttcaggatagcaagtagtatctgtctatctgagatctgttccagcactatgcacctatgcaattatgtactatcagtatacatatcatattaatattggagatcaatagcgtaactaaccacaaacagcagcaggagcaagcacatgctttcttgtcgtgaataacaggattcttgtgtttgttcccttcatgctgcaagctgcacatctcgtttctgatttattgcttcctctgtcctttaaatattgcagctttaccaatcacgtgcctcttccccttcctctacttcatggtaagtatgtattcacttctccatctaattatttcatcatgcgtcttgagctacagtatcacctgcgtcgcacaaagacgtttacctaacttgaaggacactgctttgcatcattcctaattaatctctgaaccctggatcatttcgaatgcatgtcccagttcacacatttctccctaaccattataccttaccacttggttgcaacttggatctcatgagatattccaactgtagccttcaccgttttgctttgtatagctggactcattggtcctttgtctaaaagaaaaactcatagccttccttgaatttctgacacgatttcagtttgtacgtcaaaccatcatcttcagatctatgtagcatatataacgggagtgcctgccccgtagttctctttatcaagatctctactggttcattcaagttgcatctcagtgatccccttttcgcatattgaatactctggcttattcaatcatctctgttttcataggtaagggacctgcaagtagcacaaacagaggaggacattgggtattatgctggatttcttggtaattttttttccaaaccaattcaaaatatttataaaaatggctacggtgaccagtgagaaatgtaatttaaacgtgtgtacgccggtacacctatccattgatgttttgaaatgaaggtgcttcgtacatggttggtagatcctttgccgcgatattttggggagttgtggcagatcgtataggaaggaaacctgtcattgtgttttcaatattgtctgtgtaagtcaattcagtccagctacaacagcatttctatcagtcattttagggtagtacttagatttccatgtgtgtactgtagggtcatatttaacacattatttgggctaagtacaaagtattggatggcacttactacaaggtttgttctaggtgctctaaatggtttacttgcgccaataaaggtaactaaaagtctttcaagtgacaatttcagcatgaagttgtatgaaattattcatgtgcctaggagggagctttcctaacatagtatttatcaagcattacaggcttattctattgaagtttgccaaactgaacatcaagctcttggactctccattgtaatgccaagcaattctcttgtttgcccccattgtgttccacaatcctttcaatatgcactgctataaagctgttatgatttactttgatcataggttaacacagcatggggtttgggtctcgttgttggtccagctcttggaggctaccttgcacaggtactaatttcaaaatggaaaaagaagaaaagaagctaatattcggtttcttacatcgttctgcttccttctcagcctgttgaaaaatatccacatgtattttctaaggagtcagtttttgggaggtatgtcatacactgatacaagagcaagatataagcccagattgcttgcagtcagtgttgtaactactaaatacccatatctaatttcattacattttgcagattcccgtatctcttaccttgccttggtgtatcattgtttgctgctattgttctgataagttgtatttggcttccggtacgtaaagtttcacttagatgccatttccccaataattcttaagcgaattctagcactaaatgctcgttacttagcccttttctatggtctagttaatttcacaaaacaaaaaaaatattggattaatttttttagaactgtttttctagtgttactattaatgtggttttgtttgaaaaatgtatctggcaggagactatacataaacataaatctcctgataaggacatcaaaagaatcaaagaattgccattacagcaggcttattgggattcacctcgtaagaagagcttgttccagaatcggccatggatgtctactatgatttcatattgtttttttggtcttcatgacacagcatacagtgaggtaaagaaccatgttttctacgcctttgcttgttaccagtcagaaggtcacgttaatctatctagatgccactcagtttatttctcatgcttcaaaaattattatctacatacttgctaaactattcacacacagctttgatattcacataacttaaggggttctaaaaagattaataccattagcatatttatgctagatattatccttgtgggctgtgagtgatagaaaatatggtggccttagcttttcatctgaggatattggtcaggttcttgctgttgcaggtatattgccatctttcccccaacatacataatttatatatatattctgaactattcatcagactttaaagattcatgttctcacatagctgcataaatttgttgttaaataattgtacttcatgtctcttcgtttcaggtgctagtcttctagcatatcagcttattatttaccactgggttcataagtttcttggaccaatcatttcattacgaattgcttctgtgagtagtctcctatcacgacttcaaaagaaatataaataatcatttcatggtcatcactcatatttaactgaaattgcaggctctatctatacttattctttctacttatccttttatgacatacctatctggcgcggaactttccttagctttttattcagcggcaatgatgaaaagtgctcttgcagtaagcaatttcaaagctcttccttcaaattttaagtatctacacgtgtatccaaccacaccatttgttagctaataggtacagcagtaatatttcaaaagtaataatgtacaaaaaagaagatgtgttgcactgcagaatgcagattatgaaaatctaactcagtctacaatatgacaaattcaactgtaactacttggggaagacaagcctgggttatttcatagagtactattttcagggatttaagagtaacaactaaaataggggctttattatacttccattaatatccaagtctttatctctaatgtttgttttgtacaacgtgtgcagattactataagcacaggaatttgccttttacagaacaatgctgtggtatgcataaaaatcaagtgaatgcatgtgttctgatactgtgttcacgtaaataagctaaattatttattgactttgaaattcaatatcagcttcaagaacatagaggcactgcaaatggtgtatcaacaacagctatgtcatttttcaaggcgattgctccagtaggggcaggtgttctgtgagtaccacctcttaacacttttctcataaatacaattaatgatcgagacataatgtttcttaaatgattgagataaatgatttagattttagtgatcaatactcaattttcaattcagattctcgtgggcgcaaaaacgtcaggatgccctcttctttccaggtgagctatttatctgaactgcactgcgctatacgcctatatcttgcctcgtcttttaattagccaggttggccgaaagaacaccccttccctcccttgtctttcaatttgtttggcctagtaaactaccatatctttcagtcgaccatacattacatacccttgtcctatcttatttcgttaacaaggggtttgcctggactaattgtactaaaagaacatgtaatcaggaaaaagaaaaaggaaaggctgatccagtttggctttcttgaaacctgtaggtgatcaagtggtgttcttgatgctgaactttgtggagctcattggactcatatttacttttgagccttttatggtgttacctgaggcatcagatgagtgtagttagccaagtgcagaggaattgtttcttatcaataataaatttgaaacagtaataatacttaacacttgctaatgggctgagtaatgaggcatagcttaaatatgtggcatgcttgtctgctcacagaaatggaagtccttgaatgatgaatctggctgcagtcagcatgacatgtccaattttgtcatcatggtgtattagttgcatcttgtcacaatgattactttttaaacagaacaacattttaaggtagttcatgttctcagatgtcaacatttcccctttttgaggtcactactcctacttgactaggctgacagcttagtagttgacagttaagtttagcctgaaggaactgaagacaagaagaaatcaggcgggtaatgatgagactgattgattagacaatgggaggttaactcatcataatgcttacgcacctctgtcaaaactcaaaagccagtcatcatcatcttcggattgcatcgccgctgccggggccatgacggtgttctgttcagcttcagcagcctggacccaggagccagcagcaaagcagctagctgccttggcgtcggagctcaccttcaaggaggagatacggcgggactaa</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0133000, RefSeq:Os12g0133000