Os12g0134000

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Revision as of 10:20, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0134000| Description = Similar to Hydroxymethylglutaryl-CoA lyase| Version = NM_001072625.1 GI:115487211 GeneID:4351434| Length = 3655 bp| ...")
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Gene Name

Os12g0134000

Description

Similar to Hydroxymethylglutaryl-CoA lyase

Version

NM_001072625.1 GI:115487211 GeneID:4351434

Length

3655 bp

Definition

Oryza sativa Japonica Group Os12g0134000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:1670510..1674164

Sequence Coding Region

1671329..1671347,1671611..1671743,1671816..1671885,1672009..1672188,1672630..1672710
,1672848..1673011,1673107..1673243,1673490..1673605,1673723..1673956

Expression

GEO Profiles:Os12g0134000

Genome Context

<gbrowseImage1> name=NC_008405:1670510..1674164 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:1670510..1674164 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacagcaacaccaacaattacaagcatcgcaatggtggcaacaatcagacgatctttcacagcagtgctcattcatggcatatgcaaggccaatatactgattcatcctgcaatggggtggatatggagttcagagctcttccacggaaggtttcatcagaccacctcaaatagaaggaatgaactcacatgtagcattatgactgtggcaatgcaacatgttttatgggaccttccaaggtttgtgaagatagttgaagttggaccacgggacggtctgcaaaatgagaagaatactgtacccacatctgtaaagattgaactgatacacaaattggtggcttctggtctatcagtagttgaagccacaagttttgtgtccccaaaatgggtgccacagctagcagatgcaaaggatgtggttgaagggattaagcatgtgccagatgtgcggtttccagtgttaactcctaacctcagaggatttgaggctgctgttgcagctggtgcaaaagaagttgcagttttcgcatctgcctctgaatccttttctaagtcaaaccttaattgtaccatcaaggaaagccttgttcggtaccatgatgttgtaacttctgccaagaaacatggaatacgaatccgtgggtatgtttcatgtgtggttggttgccctgttgaaggcacaattcatccatcaaaggtagcatatgtagctaaggagctttatgacatgggttgctcggagatctcactcggagacacgattggtgttggtacaccaggtagcgtacttgctatgcttgaagctgtaatgtcttttgttccagtggacaagatcgccgtccatttccatgacacatacggccaagcccttgccaacatactggtctctctccaactggggatcaacatagtggactcatcagtgtcaggactgggaggctgcccatatgcaaagggcgccaccggcaatgtcgcgacggaggacgttgtgtacatgctccatggactggggatagagaccaatgttgacctcaacaagctcatggatgctggagattacatctccaagcatctgggaaggcagtcaggctccaagaccaccactgctctccgcaagctaaccacttaa</cdnaseq>

Protein Sequence

<aaseq>MTATPTITSIAMVATIRRSFTAVLIHGICKANILIHPAMGWIWS SELFHGRFHQTTSNRRNELTCSIMTVAMQHVLWDLPRFVKIVEVGPRDGLQNEKNTVP TSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVVEGIKHVPDVRFPVLTPNL RGFEAAVAAGAKEVAVFASASESFSKSNLNCTIKESLVRYHDVVTSAKKHGIRIRGYV SCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVMSFVP VDKIAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYM LHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT</aaseq>

Gene Sequence

<dnaseqindica>820..838#1102..1234#1307..1376#1500..1679#2121..2201#2339..2502#2598..2734#2981..3096#3214..3447#gcggcctccattttcggcgctctgctctctcctttgcgtcggattcaagtaaggcttgttgagttcggtgccccatatccctcaatctcgggtgcgattcgatcgggtttgcttcgaattcgtcgttcgattgaggtatgtgatttcttgtttcttcttggttctttcccctttctgttccctgttcttcgtagcaagtatgttgccgattggcctgcttgatttggtttcatggagaggttgcagtgtgggtttgtagtatcttggtttgctttgagtatttacaaggaaaaaaaatgaattaatacagagcagttggcgctgttccatttttgctgctagttactgggcatcatcatatattagttcatcaagcatggcatttcatgattgaatggttaaagagacctgcttgatggataattaattagggtgagtatctcatgtgcaattcaatatctaaagaagaagtctggccaagttcgagttccggtgtgcaagcaagcattgcacactgcacattgaccatgccgggagaatggacatggtttgcgagtcccattggattggatttcaaacgttcctttccatgcggactagtgcaccatttctgactatgttcctcaactcccccaccccgggcgtgtcctttatatattaacatatcaagattcatctcaacatagttgttaaaattgtaacgcctcctgcttcacagaatgtcaagcctcgaggagccacttggtcttggggacctgccaaagttgagtattaacagacttgaaaggttctctccaagtgcctgcagagcaagtgttgatgacagcaacaccaacaagtaagttctagtgttctactgttgcaaactttaccgtgctacatttcttcctttcctagttgttgctttgtcggtatttttactttgacgcggaatgtttttccagtatttccagaggtttaagcaaatcatgtacatttccacctttgcaacacttctatttttcttcaggaacttgttagtttactttagtgacagtagaattttattactgaagtatgccctgaaactcgtatgatatgaccatgtgaacttactttcagttacaagcatcgcaatggtggcaacaatcagacgatctttcacagcagtgctcattcatggcatatgcaaggccaatatactgattcatcctgcaatggggtggatatggagttcagagctcttccacggaaggtagtttgatcatgtgtaactgaaatggctcatgggtgattgggtgtattcaatttcatttccttgttataggtttcatcagaccacctcaaatagaaggaatgaactcacatgtagcattatgactgtggcaatgcaacatgtcagtcttctctatttacctttataactaaataagtgaaaatggccgctgatgaagtatagtgatcgtaatgtattaccacaagttactccttttctcaattgatgattaactggttttcaggttttatgggaccttccaaggtttgtgaagatagttgaagttggaccacgggacggtctgcaaaatgagaagaatactgtacccacatctgtaaagattgaactgatacacaaattggtggcttctggtctatcagtagttgaagccacaagttttgtgtccccaaaatgggtgccacaggtaattacttagattaggtgaaggcgtgtactagtatcatacattaatttaaatcacagacatttgagagattgtcacgatagctcttgatttgttttttgtcagtatttactcagattaggtgaagaaacgaaccgccttttctaagaatttagcatgtcatgctgcatgagaaactcatgcatatctggtagcacttaatttctcatcagaagttgttactgataattccatctaacttctttcactatcaattttttgtatgacattagtttgtaaaacttgtaccgcaaaatttattacataacaaaaaatgttaaaattgggacattagcttgtaaaacttgtattgcaaaattcattgcagaacaaaaacacgataaaattggtagcagttcaagttcaaatagctaacctttatcactcaatttggagttgcagctagcagatgcaaaggatgtggttgaagggattaagcatgtgccagatgtgcggtttccagtgttaactcctaacctcagagtatgtctggttctgttctattattgggagactctacaatatactagcaccatagcaccaatagactatctatacgtatcgttttttgaagacttttgatctattgtgatgaatcaaccttatctccacttatccagggatttgaggctgctgttgcagctggtgcaaaagaagttgcagttttcgcatctgcctctgaatccttttctaagtcaaaccttaattgtaccatcaaggaaagccttgttcggtaccatgatgttgtaacttctgccaagaaacatggaatacgaatccgtgggtaagtcacataagcttgatgatctatcgagcctgaaagttaaaatgaacagacagcaatctgatctgagaatttgcaaaatttgattgtcataggtatgtttcatgtgtggttggttgccctgttgaaggcacaattcatccatcaaaggtagcatatgtagctaaggagctttatgacatgggttgctcggagatctcactcggagacacgattggtgttggtacaccaggtattgattttgttgcctttactgctttcagcatgtcatttcctggtttatatatttttgcgcatttaaaactactttcaaaagcgatgatacgtttttttgaaagcattgcagtcctaatccataaaacatgccgacacattacttgctaatcatgtgatttcaattgttcgaacttttctacatgatagtatgagccacttctcattgggaatttcctgctccttgttatcttatttgtttcaggtagcgtacttgctatgcttgaagctgtaatgtcttttgttccagtggacaagatcgccgtccatttccatgacacatacggccaagcccttgccaacatactggtctctctccaagtaagcaaccacacttcacatcctgccaatgccaatgaacaaaccatcttactgaaaaacagacacagaacaaccagaaatgctctgttggtctaacatttccttttgtattaccagctggggatcaacatagtggactcatcagtgtcaggactgggaggctgcccatatgcaaagggcgccaccggcaatgtcgcgacggaggacgttgtgtacatgctccatggactggggatagagaccaatgttgacctcaacaagctcatggatgctggagattacatctccaagcatctgggaaggcagtcaggctccaagaccaccactgctctccgcaagctaaccacttaagtccctgatgatcataatagggattcagaaaagaagtccgaagatacatcggttggcgtcagtttaatgtttttacacaagtcatatgtgattgtaacctgtaaaccgtctcaatttagtcccaatatgggtgaaagtaaacagaaaccatatatgtatagacacatttgtgtttaagttcttggattgaataatcaatgcccttcat</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0134000, RefSeq:Os12g0134000