Os12g0152900

From RiceWiki
Revision as of 10:22, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0152900| Description = Basic-leucine zipper (bZIP) transcription factor domain containing protein| Version = NM_001072711.1 GI:115487383 Gen...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os12g0152900

Description

Basic-leucine zipper (bZIP) transcription factor domain containing protein

Version

NM_001072711.1 GI:115487383 GeneID:4351527

Length

6683 bp

Definition

Oryza sativa Japonica Group Os12g0152900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:2604857..2611539

Sequence Coding Region

2605155..2605236,2605774..2605916,2606353..2606595,2607260..2607531,2607691..2607733
,2607822..2607899,2608026..2608085,2608272..2608331,2609440..2609577
,2609655..2609767,2610333..2610472,2610867..2610964

Expression

GEO Profiles:Os12g0152900

Genome Context

<gbrowseImage1> name=NC_008405:2604857..2611539 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:2604857..2611539 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggagaggctaggagagggcagaatcctcatcatgttcttggctatggcttccatggcaccaccttgcccaactccatggcttctgcaaacctcttcgagcaaggaggaggaggaggaggtggcgctgcctattttggagagctagaagaagctcttgttcatcaggttgccacactcaggaggagggctcaacaaactgcaaccaccaccacctctcaccatggacacaccactcccttctccactgctgctgctgcagctacagcaacagcaacagctaggcctcctgctacactggacatcttcccatcctggcctatgaggaggagctctcttccaacaccgaaggatggatgttcaaatgtaacggcagacacaacggactccgagagcagcagcaagaacaacggcgatcagggtgcagcagcagccgacatggcgagccagtttgatcagatcccacagcagcagcagaagcagcacaagaagatggcagcaagttccactcacagtgaccacaggatgacaaagacacttgatccaaagataatgagaaggttagcccagaaccgagaggcagcacgcaagagccggctgcgaaagaaggcttacatccagcagcttgagagcagcaagttgaggctggctcagatggagcaggatctcgagagagctcgttcccagggcctcttgctgggaggatcaccaggtggaaacaccagcgcaggagcggcgatgttcgacgccgagtacgggcggtggctggaggacggcgggcggcggatggcggagctgcacggcgggctacacgcgcacctgccggacggcgacctgagggcgatcgtcgacgacgccctggcccactacgacgagctcttccgcctgagggcagccgccgccaaggccgacgtgttccacctcatcactggcacgtgggccacccccgccgagcgctgcttcctctggatgggcggtttccaaccgtccgatctgctcaagacagtggcaccccagctagaccctctgactgaacagcaagtggttggcatctgcagccttcagcaatcatcgcagcaggcagaggaagctctctcccagggcctggagcagctgcatcagtcactagctgagaccgtcgccaatggcggctccgtggtcaacgaagccagccttgggagcttcatgggttacatggcccttgccctgggcaagctgtccaaccttgaaggctttgtcatacaggctgataacttgaggcaacagactcttcatcagatgcacagaattctgacaattaggcaggcagctcgatgtttcttggcaattggcgagtaccataatcgcctccgtgccctcagctccctctgggcttctcgtccccgagagatattggtggcagatgaaggcaactgtggagagctaagcatagcagcacaaccatctgaaagccaattttcagctttctga</cdnaseq>

Protein Sequence

<aaseq>MGEARRGQNPHHVLGYGFHGTTLPNSMASANLFEQGGGGGGGAA YFGELEEALVHQVATLRRRAQQTATTTTSHHGHTTPFSTAAAAATATATARPPATLDI FPSWPMRRSSLPTPKDGCSNVTADTTDSESSSKNNGDQGAAAADMASQFDQIPQQQQK QHKKMAASSTHSDHRMTKTLDPKIMRRLAQNREAARKSRLRKKAYIQQLESSKLRLAQ MEQDLERARSQGLLLGGSPGGNTSAGAAMFDAEYGRWLEDGGRRMAELHGGLHAHLPD GDLRAIVDDALAHYDELFRLRAAAAKADVFHLITGTWATPAERCFLWMGGFQPSDLLK TVAPQLDPLTEQQVVGICSLQQSSQQAEEALSQGLEQLHQSLAETVANGGSVVNEASL GSFMGYMALALGKLSNLEGFVIQADNLRQQTLHQMHRILTIRQAARCFLAIGEYHNRL RALSSLWASRPREILVADEGNCGELSIAAQPSESQFSAF</aaseq>

Gene Sequence

<dnaseqindica>6304..6385#5624..5766#4945..5187#4009..4280#3807..3849#3641..3718#3455..3514#3209..3268#1963..2100#1773..1885#1068..1207#576..673#gactccatgacaaaacaccttcaagtagagacaagacctatacctctctctcctttcctctcttcaaagaagaaaaaaaccagcataggagaaaggaaggacaagatctttccatcaactgtgtgattagcatgccccagaccggaaggtgaagctgctacactttcagatactccatatcaagattcaagagagagctaaagctataggagtgagcagcaatagcaagagccaagaacagctagctactccagctgagagccaagaaccggtcaagctttgcttcttgcacttcttgctagctaaagctactccggtcacttttctgctatagtagctcttggctcttgcttatcacaagagaccacaatcttggtatgtttctttctttgactctctcatcttgaattcttcacatcatctggcgtgtagcatactagcatgtacagtagcagcgatcatgatgttcttttttgttgttctttgtggaggtagatcgaagaaatttgagctagcgcttcgttctgattcttggagatactgggagatcgagctgtggttttgtggctcgtaggatgggagaggctaggagagggcagaatcctcatcatgttcttggctatggcttccatggcaccaccttgcccaactccatggcttctgcaaacctcttgtaagatcagttcatcatcatcctctctctccttctctcccaacatctcgttttcatctttctgtctccttctctcccaatatctctctctctctctctctctctctctctctctctctggtgattgcgaagtgcaaactgtgcaacataaacatgatctgaagttctgaaccatgagcttctctttcacgttcaggggaagagtgctatatgcatcggttgctgaatcagcactcttctcagcttgttcttttcatattgctttctcattactgttcttcatgaatatttcttcagatcattctggtcaacaaatttattcccaacaagttgttgatctcatgttacatgttttaatttcccttcttaatttgcattggcctgacactgacagcgagcaaggaggaggaggaggaggtggcgctgcctattttggagagctagaagaagctcttgttcatcaggttgccacactcaggaggagggctcaacaaactgcaaccaccaccacctctcaccatggacacaccactcgtacgtactcacaacatcatctctctctctctttctctgaccaagaacaaaagcacacaacctagtgagccaactttcccaagaggttagggcagtgtagtcaaaagcaaccatgcaaatccatttggaaaaaaaaaaagaacagcaaaaactttgtagctagccaaaccacatgcaatgcaaagcaagagctacagatagcaggagtggcagttgtgcttcttgtcaccttgtgtgtagtggtgtgactgccttgtgactctcctcatcatcatcaccatctctctctctctctctctctagagtgcaacaattctccaaagtactatagtaccagctctggctagctccctgccatggcagcaaagcaaagcacacagtctgtgcagtactcctagctcctcaaagggaataaattccagtccacctttcactgccacatgggccccacttgccccttgtgatcccagtgcagtgcttcagctggtagtagctttctgatgttgcagttgcaggattggatgcatttcttgatctcctcctcccctatgatatcttcttgcagccttctccactgctgctgctgcagctacagcaacagcaacagctaggcctcctgctacactggacatcttcccatcctggcctatgaggaggagctctcttccaacaccgaaggtaaatacttgagcatgatccctactgcatttttcatttttgcaaagcaaaggcaaagttacagctgtgttctgtaggatggatgttcaaatgtaacggcagacacaacggactccgagagcagcagcaagaacaacggcgatcagggtgcagcagcagccgacatggcgagccagtttgatcagatcccacagcagcagcagaagcagcacaaggtttgcattctcatcaatcactggagtttcttgatgtgcgttttggtgtaattcttggtcttgagtttcttgatgcgttttggtgttgtaaacgcttgttcttggaggtgttcatcttgtctttgcttctgcatggatctcctgattcctgatcatgcatatacctacatcgcgagaagaaaataaagccatgcagtggtgcagatgcaatgcgttgttccctagtctggtgtcatgtcagtagctagcccacaactcaagatgctcatggagtagtactagaagagttcagggtcatttaagatcttgctgctcccaagatcaccaatcccaacaagttaggtgtattatttggctctacattagaaagttccaacttgttcccctgatgcttcatccaagggaccagcgtttttctgaagaatcagatgcagaatatgatcactttagtaattacccatgcattttctttgacatttagccttacttgccactacaaatttctatctttttcattctttggaaaaaagaagaggagcagataagtctaggaaaggatatgttagacttgtgcatgctagcttatgtgctgtattaggcgacaagtatgcattcttatagtatgttaattgtctctagcttgcacaaagtatggtcccaaaaaaattgcaccaactgatacctgaacaatggcaatttggccatcaggggtgctttaggttccttctggccaattgatgaactgccaagatcacattggatgaacaattattacccaatgtttatatctaactcacgcttaactgaaagagaactttgcatattagggcgtgacagcaacataaacaaaaaagcagaacaatatttttgtctgttgttagagtgggtggcttccacccatatacattgctgtttttttatatctggttgatgtaacgtgcatccaaagatcatactagtatattttatttgcaccataggcacataagcatgtatatcatcactatttttctatttatcttgtatagtttctaactgcacaaaactgtagtaattaaagtgcatcttgtaattaacaataacttgttcatgtccacatggcatgcagaagatggcagcaagttccactcacagtgaccacaggatgacaaagacacttgatccaaaggttaatcctactctcctagctctctcatactcccagttgatgcttaattagatagcatgatgatgatgattatgcgtgctcatgcaattatatgtatgtacagaaccattcagtgcaagctaattaaagactgtttgaaacatgagtttgagacaattacttactctctagtgttggtgtaatcagataatgagaaggttagcccagaaccgagaggcagcacgcaagagccggctgcgaaagaaggtgagcctagctagatccatgagaatttcagtacctgcatagaaagaaaatgagttgttcagaactgaatttcttcttcccaataagtttctgacagcataatctgtcaaaaataccaatttgcaggcttacatccagcagcttgagagcagcaagttgaggctggctcagatggagcaggatctcgagagagctcgttcccaggtagtaatttttttctgcattctgaactaattactaaacattataggtaggatcatgaatgcagtaaaatctgaatttcttggttcagggcctcttgctgggaggatcaccaggtggaaacaccagcgcaggtaatgcattgccttcacttgatcaatctctcatgtttagtagcttttatctactgatctgaaatgtgaaattcagtttgattgtcatataggatttgcatcagatcagtaataattcagtatatatgttttactttactgtccatttggtcgtggcaggagcggcgatgttcgacgccgagtacgggcggtggctggaggacggcgggcggcggatggcggagctgcacggcgggctacacgcgcacctgccggacggcgacctgagggcgatcgtcgacgacgccctggcccactacgacgagctcttccgcctgagggcagccgccgccaaggccgacgtgttccacctcatcactggcacgtgggccacccccgccgagcgctgcttcctctggatgggcggtttccaaccgtccgatctgctcaaggtatatacatactcgagatcctatcctctaacttacttttgtctgacatgagtcactgacatgtggatcttctactcaacgggctcacatgtcagtaattagaagtttaagtaagttagacatgatcctcctcatttctaaacccctttctggacacgaagctatttaattattgaaacagattatttagccgattactgctgcagattatctccttaattataggataaattaaatattttgataaataaattgaacgaatagcttaaaataagtggtctaaacaatacaataaaagaaagctttcatcataaaaagagctaagttttttcgtcacaaaatgcacctgaaaatctggagtaacatcagacatggagcatacttcacagttcatgataaagcaaaacttttactatatcatgcttaaacatgctcatggtatgtagtcataacctcacatctgaacatgataagttaaagctaggctagttttcataagaaaatgcacctgacaatctgacatcaaacatgaagctcacttcacagttcacaatgtgcaaaacaatttgccaaatcaagttttaaccatgctaaatctgacctcatcttctaagtacaagtatggtttttctaatttcattacaaactcttgatgttgatgcagacagtggcaccccagctagaccctctgactgaacagcaagtggttggcatctgcagccttcagcaatcatcgcagcaggcagaggaagctctctcccagggcctggagcagctgcatcagtcactagctgagaccgtcgccaatggcggctccgtggtcaacgaagccagccttgggagcttcatgggttacatggcccttgccctgggcaagctgtccaaccttgaaggctttgtcatacaggtgaagtccttgttgcctgccctttttccagttctgatccttctctccctgtttgactcaactttgtggatgtctagatgagcaatccaatcacttgacagtcgagcaaaaaaacagtcatttttatccttttaataatgcgacatgccaacatgttaattaataaagagtgaaaaggaacaaattttcctacagtaatatgctatggcatcaacatgtagagatgttatctctacatcatacaaagaaaagaatggtcacctaaacatgtgacattatccttattttggactttggagcttatctgattaactatagtatggcatagtaaaacaaacttactaccagtatctgctctagttttcaattttctagtgccaagagtgagatcctttcatcatgtactaaaactgcaactgtcaaattggatttccaggctgataacttgaggcaacagactcttcatcagatgcacagaattctgacaattaggcaggcagctcgatgtttcttggcaattggcgagtaccataatcgcctccgtgccctcagctccctctgggcttctcgtccccgagagtaagcaccatgctctagtcctacctgcaattaattcttttcctttctttattttatgataagcctcctacctgtagttgttgaaggtttaatctctgattggaaagttcgaagtacatataactgaaccattatttactagacaaaaaaatataaggaatgcaccctattaaatcagcatggaatggaccagcctcctactggaggtagtcaaaagctagcaaacttttttttgcacatcatgcatactgcatgcactttattttatcataattttgaaggtcattacaccaataaactagtggtagtcccttatcctaaaaaagattatgataaaatacaatgatgtgaaggtgtacaaaataagggctagatatggattttgtccctttctatgcatgtttcaactatttcaggctttcagccaactaactaaattctataaaagtctaaaagaataataggacagcagctgtagtgctatttatctggacgcatccatcatatatttatagctggagccttatttgcctgtaggatattggtggcagatgaaggcaactgtggagagctaagcatagcagcacaaccatctgaaagccaattttcagctttctgatttacaaggactttgaagactaaccttcagataggagcagaagtaagcaaaactgggaacaaattttggaagtaatctgacacgtgtgggaaacactgatatgagctgggaaacaatgcaagctccagaactaggaagatttctcagaacccagattgcatagaactcacatggtaatttgcctgagatgtcaaatgatttaatgtcctgcccagtgacaacaaaaaggggttagctagattttgttgctgaaatactacttatttatgtgatttagtggcaaattatgtttcccgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0152900, RefSeq:Os12g0152900