Os12g0154000

From RiceWiki
Revision as of 10:22, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0154000| Description = Protein of unknown function DUF250 domain containing protein| Version = NM_001072717.1 GI:115487395 GeneID:4351533| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os12g0154000

Description

Protein of unknown function DUF250 domain containing protein

Version

NM_001072717.1 GI:115487395 GeneID:4351533

Length

4783 bp

Definition

Oryza sativa Japonica Group Os12g0154000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:2661007..2665789

Sequence Coding Region

2661463..2661472,2661546..2661633,2662624..2662640,2662735..2662943,2663573..2663734
,2664072..2664272,2664357..2664541,2665108..2665240

Expression

GEO Profiles:Os12g0154000

Genome Context

<gbrowseImage1> name=NC_008405:2661007..2665789 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:2661007..2665789 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacttcttccatgagcaaatccgacaagaagaaggtgctagattttgcggcatggagtttcaacatcaccacatccgttggaatcatcatggtcaacaaggctctgatggctacacatggattcagtttcgccacaacattaactggtcttcattttgtgacaaccaccttgatgactatcgtgtttcggtggttaggcctcagccagccctcccacttaccaataccagatctgattaagtttgtgatcttttcgaacttgtcaattgttggaatgaatgtgagcttgatgtggaactctgtgggattttatcagatagcaaagctgtgcatgatacctgcatcatgtctcctggaggttgtcttcgatcgtgtacattactcccgggacacaaagctgagcataatggttgtgcttataggtgttgcagtctgcacagttactgatgtcagtgtaaatgcaaaaggtctggctgctgctgttatagctgtttggagcacagctttacaacaatattatgttcattttctccaaaggaagtactctctgaactcattcaacctcctgggccacactgctccagcccaagcgggatctcttctgctagttgggccctttgtagatttcttgttgacaggcaaaagagtggatcactttggtttcacatcgattgctttgtttttcctgactctctcatgtgtcattgccattggtgttaatctgagccaatttatctgcattggtcggttttctgccgtatccttccaagtcctgggccacatgaagacagtgctcgtcttgtcccttgggtttctcttctttggcaaggaaggtctgaattttcaggtagtccttgggatgatccttgctgttgttgggatgatatggatggcagtgagaaataagaagataactttgaaaggcaatttcatctttggctgcggagcaggttaccttttacagtggattcaatgctggtataattggttgagcctgatgtga</cdnaseq>

Protein Sequence

<aaseq>MTSSMSKSDKKKVLDFAAWSFNITTSVGIIMVNKALMATHGFSF ATTLTGLHFVTTTLMTIVFRWLGLSQPSHLPIPDLIKFVIFSNLSIVGMNVSLMWNSV GFYQIAKLCMIPASCLLEVVFDRVHYSRDTKLSIMVVLIGVAVCTVTDVSVNAKGLAA AVIAVWSTALQQYYVHFLQRKYSLNSFNLLGHTAPAQAGSLLLVGPFVDFLLTGKRVD HFGFTSIALFFLTLSCVIAIGVNLSQFICIGRFSAVSFQVLGHMKTVLVLSLGFLFFG KEGLNFQVVLGMILAVVGMIWMAVRNKKITLKGNFIFGCGAGYLLQWIQCWYNWLSLM </aaseq>

Gene Sequence

<dnaseqindica>4318..4327#4157..4244#3150..3166#2847..3055#2056..2217#1518..1718#1249..1433#550..682#gggagatttggagacacttgttttcatttcgctaaaaaaaaaataaaacaaaagaaaaaaaaaacaccacacgagcaaaatctccttggcccgccgccgccgcctccgccgtcgcgcggcgatctccaccaccgcgacgcgagcggcggtgcccggcggcgtccagctgctcccgccgccgcgtaccctcgcctctggctcctcctcgccgcgcccaagccaatctctccccacccgccacctcggcctctcgactcgcgagcgagttcgccgatctccatccatcacccctcgagccagcggcgccggccgacggcgtgcttccggtgagcgcgcgtcctcttttcctctcgttctacccgcgcgcaccatttctctgtgccttaacctttttccttctcttctccttctagatctggaagaggatttttctctctgttttaaccttagtaccaattcttacagttttgtttcctcccaaaataatttgttaggtcctcccctgccaaagtgttggtgttgatttgaagcctcaaggattcgagcgaaatgacttcttccatgagcaaatccgacaagaagaaggtgctagattttgcggcatggagtttcaacatcaccacatccgttggaatcatcatggtcaacaaggctctgatggctacacatggattcagtttcggtatgttttttgctaccttaagatatatattttgtgatgttttattccaggctactccgtgttctgggatgacaaacttgcagtattatgttgttttagtatagaacgaataaatgctactagatcttatgtaattgtggattctagatgtttgttccttggggcatgcaattaaacaattgactgacaggcatctttaaactttgagtaattttttatcaaattccaatcatttgaattctagataatccatatgccaaagaagttcgccggatttgtttttgttgtgatctaaaacaaattaaaagtgaacctataaggtatccggtggacctgaaaaccacgctgttctagctgctatgagaattatgatcataatttcttgtcacaagctgccactctgcttgatgaacattaaaagggccttaatggaacagtggaagcacactatattatccagtttcttgttgtgtccaacaagatttatgggctgctcctcaacatacacatacttcatttgtatgataatggatgccatgtaactgactgtgttttgtattttgcagccacaacattaactggtcttcattttgtgacaaccaccttgatgactatcgtgtttcggtggttaggcctcagccagccctcccacttaccaataccagatctgattaagtttgtgatcttttcgaacttgtcaattgttggaatgaatgtgagcttgatgtggaactctgtgggattttatcaggttagcaaaggaccgttctagtagctagattccatcatggctttaaactttcaactactaaacaatcctttttcttcccttcagatagcaaagctgtgcatgatacctgcatcatgtctcctggaggttgtcttcgatcgtgtacattactcccgggacacaaagctgagcataatggttgtgcttataggtgttgcagtctgcacagttactgatgtcagtgtaaatgcaaaaggtctggctgctgctgttatagctgtttggagcacagctttacaacaatatgtaagttaaaatcaccacccttgttgtatggttatgtcttatatatcagctatgagataagattgcattctattcctatagctctcctttggcagccatgaacatttttatgagggggaaattagtacatggtggtacaacagtaactgtggctatctatttgtcttcttattgatgaatgatgaatagttggcgctccctgaatcattattggttccctgcagtccttgttagttatgaataattggcactccctaaatcatttgtttgtttgtcacttctttaattatagacaaattactcattagtttcctttccttttctattttccttgcagtatgttcattttctccaaaggaagtactctctgaactcattcaacctcctgggccacactgctccagcccaagcgggatctcttctgctagttgggccctttgtagatttcttgttgacaggcaaaagagtggatcactttggtttcacatcgattgctttggtaagaggctagcctcattacaatgctttgtttctgatctaagttagacaaaaccacaggaattttggcatgtgacacaaaaccatgattctaaagtttcacaaaccaacaccgttaaccattttgacatactcatatattaaaattttacaaagcggatgtaatatttatatgatggataaaacgctcataaatttgagatgtgattgtataactcaaaagtgtggtagatataagttaaaatgatcaatagtgtggttttgtgaaactctaggattataatatgtggggttatatgtcacatgccaaaatcccagtggttttgtgcaacttggaccataatatgtgggattttatgaaatttactcattttcaaatgacctagactagcattacatttcctcttgtgaccacaaaagtctttacttcatagcatcacttgttagcagtaacttcaaacaactatagtctatagatttccttttatgtgcaatctcttgcttgttattagtctatagttacactttacttggttggaatatggatgaatttgagtcaatgcttgatttgtttgtaatttgacctcaaattttccatttcatcttacgatggtttttattgttccgcagtttttcctgactctctcatgtgtcattgccattggtgttaatctgagccaatttatctgcattggtcggttttctgccgtatccttccaagtcctgggccacatgaagacagtgctcgtcttgtcccttgggtttctcttctttggcaaggaaggtctgaattttcaggtagtccttgggatgatccttgctgttgttgggatgatatggtatgggaatgcatcagctaaaccaggtggcaaagagcggcgcagcgttcttccagtaaggtctgagaagcctaatggagcattagacgagaaggatggcagtgagaaatagtacgtgacctgcgatttatatgacaatttcttctgtgaagtttttctggtgatgcaggtatgatatacaaaggaaaccttgcctggcgtcttcgtttagtgctgaagccgtagatttgccatctagaaactcagcattgtcatagctatagattacagtcaatatacacttgtcatcacatttttcgttctcctgtacatttcttatgggggagacagcagagatgttctacagggttgcatgacagttgtcccaaaatacaatatagtaactgtttgtgataacacgaatttctacatttccctctggatctgtacagagtaatatgttactatatgaagcagttaagttgcattgcagcattttaggcttaaatacgcatgctgtacacagtttatgcggccttcactaccctggtttttagcagcagcagcagcaaaagcatcgttcgaagttgagcttggttgttgtagtgtagtagagtcgaatgacaaggcctgtgtcaactgttacagttatgcatttgaatctcgtgttaaatggagaaatttctcgttcaaatgggctcatcagattggttgggttggttttctggcactccttttttttttctttttcatagcctatgtcgtcgttggtgttgagcctaatccacaaacggtggcccttctagattaaagtaatcatgcacgttatgtttaattaattggtgatgacagcataccggaaggctccaccatcataggtgatgacagcaaccattaacactgggctcaactctcttttggattaatgttcagtgtaaaaagtgtcggataaaatgttttggattgttcagtgtaaaaaatgtcagataaaatgctatggtcaagatacaaaggttgaactctcttggattgatgagcctcaatttacagtaaagttggtcttaagacgatgaacgcagcagagaagataacttttaaaggcaatttcatctttggctgcagagaagataactttgaaaggcaatttcatctttggctgcggagcaggttaccttttacagtggattcaatgctggtataattggttgaggtgagggtgtaaaagttactcatttttcaatcaggtatatatgctgaaattgatttactatgatcatcaacagcctgatgtgatgatcaaatggaaattgatccgtatgtacctccaagatgacaacagagttgaacaacaagaagaatctgatcaaatgaggttgttgtcattggtggaagaaaaatgatcccaaagattcaagaactaattatcaaggattactttgatgggagctgaatacagaattgaggcctgacgaagctgttgcttgtggaactgctctagccatcctacatcacatggatatctttgtattgtatgggagtagacaataattatcagatagggtgttttacatatttgtattatgcttactgaatgtgatgttcagttgcagtgttgtagtttggaactttggatgaaccctattcggcgtatatatgcgttcctctcgctgggattcagttaattgcactgcttaacttcttgtataaagtattgattgaagttattggtatatatactgtatattaacg</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0154000, RefSeq:Os12g0154000