Os12g0168700

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Revision as of 10:23, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0168700| Description = AMP-dependent synthetase and ligase domain containing protein| Version = NM_001072788.1 GI:115487537 GeneID:4351610| ...")
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Gene Name

Os12g0168700

Description

AMP-dependent synthetase and ligase domain containing protein

Version

NM_001072788.1 GI:115487537 GeneID:4351610

Length

5219 bp

Definition

Oryza sativa Japonica Group Os12g0168700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:3482974..3488192

Sequence Coding Region

3483930..3484379,3485076..3485156,3485247..3485519,3485700..3485831,3485908..3486081
,3486169..3486398,3486567..3486684,3486953..3487084,3487194..3487328
,3487398..3487604,3487777..3487941

Expression

GEO Profiles:Os12g0168700

Genome Context

<gbrowseImage1> name=NC_008405:3482974..3488192 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:3482974..3488192 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaacccttattttgttggtcttctcgtcccaattgcggtatctcttctcctacggaagaggagaatggttgggaagatgagggcactgccagttgatgtgggtggagagcccgggtatgcaatccgcaactatcgattcaagcaaccggttgaaactcactgggaaggtgtcaccacgctcgccgagttgtttgagcagtcctgcaaggattatgtcaacatgccgctcctcggcaccaggaagctcatctccagggaacaggaatcatcactagatgggaggtcctttgagaagcttcatcttggagagtatgactggaagtgctacgctgaggtattcaagagtgtttgcaacttcgcatctggactaattcggctaggccatcagaagactgatcgtgttgctattttcgccgagacgcgggctgagtggcaaattgctctgcaggcatgcttcaggcaaaatattacagttgtcacaatctacgcctccttgggagaggaagcactgtgccactcactaaatgagacagaggttactactgttgtatgtggtcagaaagaactgaaaaaaatgattgatataagtgggcagcttgacacagtaaagcgagttatctatatcaatgaggaaggaatctcagctgaagtttctttagctcaaaaaagcactagctggataattgagccgtttgaggatgtaggtagattgggagatacagcacctgttgatgcaaacatgcctctcccatctgacgtagcagtgataatgtatacaagcggtagcaccggattgcctaagggagtaatgatgacccatcggaacgtcctggctacactttcagcagttatgaccattgtgcctgaaattggtaaaaaggatgtatacctggcctacctgccacttgcacacattcttgagttggcagctgaggcactcatagctgctgttggggcttccataggatatggatcacccttgaccctgactgatacatcaaacaaaataaaaaagggaacactgggtgatgcttctgcactcaagccaacactgatgaccgctgtacctgctatacttgatcgtgttcgtgatggtgtgagaaagaaggtggatacaaagggtggtgtagcaaagcagttatttgatgttgcctataatcgtcgacttgccgcagtcaatggaagttggctgggtgcatggggattagagaaactcttgtgggatatgcttgtcttcaaaaaggtgcgagcagttttgggaggaaaaattcgctttgtactttcaggtggagcacctctatcaggagatacccagagatttatcaatatatgccttggggttccaatagggcaagggtatggtcttactgagacatgtgctggaggaacattttctgagtatgatgacccatctgttggtcgcgttggtgctccactaccttgttcgtacattaagctgattgactggtcagaaggtggatacttaacaagtgactccccaatgcctcgaggagagattgtcattggtggtcccaatgtaactaaaggctatttcaagaatgaagctaaaacaaatgaagtctataaggatgacgaaaaaggtatgcgatggttctattctggtgacatcgggcgcttccacccagatggctgccttgaaatcattgaccgtaaaaaggatattgtgaagcttcaacatggtgaatatgtgtctctcgggaaggtggaggctgctctgattgtgagcccatatgtggagaacatcatgatccatgctgatcctttccacagttactgtgttgcacttgtggtagctgcacacaatgagctggaaaactgggcttcgcagcagggagttacatacaccgatttcgtagatttgtgccagaagccagaggctgttaaagaagtgcttggatctctatcaaaggctgcgaagcaagcgcgactggagaagtttgagatcccggccaagatcaagctgatatctgagccatggaccccggagtctggccttgtcactgctgccctcaagctcaagagggaagtgctcaggaagacatatgaggatgatcttgctaaactatacgcctga</cdnaseq>

Protein Sequence

<aaseq>MNPYFVGLLVPIAVSLLLRKRRMVGKMRALPVDVGGEPGYAIRN YRFKQPVETHWEGVTTLAELFEQSCKDYVNMPLLGTRKLISREQESSLDGRSFEKLHL GEYDWKCYAEVFKSVCNFASGLIRLGHQKTDRVAIFAETRAEWQIALQACFRQNITVV TIYASLGEEALCHSLNETEVTTVVCGQKELKKMIDISGQLDTVKRVIYINEEGISAEV SLAQKSTSWIIEPFEDVGRLGDTAPVDANMPLPSDVAVIMYTSGSTGLPKGVMMTHRN VLATLSAVMTIVPEIGKKDVYLAYLPLAHILELAAEALIAAVGASIGYGSPLTLTDTS NKIKKGTLGDASALKPTLMTAVPAILDRVRDGVRKKVDTKGGVAKQLFDVAYNRRLAA VNGSWLGAWGLEKLLWDMLVFKKVRAVLGGKIRFVLSGGAPLSGDTQRFINICLGVPI GQGYGLTETCAGGTFSEYDDPSVGRVGAPLPCSYIKLIDWSEGGYLTSDSPMPRGEIV IGGPNVTKGYFKNEAKTNEVYKDDEKGMRWFYSGDIGRFHPDGCLEIIDRKKDIVKLQ HGEYVSLGKVEAALIVSPYVENIMIHADPFHSYCVALVVAAHNELENWASQQGVTYTD FVDLCQKPEAVKEVLGSLSKAAKQARLEKFEIPAKIKLISEPWTPESGLVTAALKLKR EVLRKTYEDDLAKLYA</aaseq>

Gene Sequence

<dnaseqindica>957..1406#2103..2183#2274..2546#2727..2858#2935..3108#3196..3425#3594..3711#3980..4111#4221..4355#4425..4631#4804..4968#gccgcccgccaccgcgctctccctctccccccaattccatccctccacgccacgatcgccttccgcaaggtaaccgccctcccctcgccgccgcggctcggagcttgcatgcatgcacgcatcatcatcatcggctcatcgcagatgtagggtagggacggtggtaagtgcagcgccagcttgtgtggcgaaacctagagagagaacactgttacctgcagttccaactacccgttggattaactatccctctctgtcccataatactgttcatttttttggcctcttctgtttgtcccaaaataagtttattttgatttttgagtgatcattgcatcggagtttataaaaatagagaataaatgtattgagagtaagataaagttagcaataattgcattgtgattcgataaattatgggtattttagattttttggttttgtattttggtacgtgtgggatgaatgaaaaatgggatggaggtagtagcttttgtcaaattctcttcttttgggggcattgcatcgcgtcctacatgctttgatacattgccaaagcaatcacctagtcaatttttattttgtaatgagtcaatcagtaagtggagtggttgcacaattacgatgggccgcccaaagaacgaaccttgcagtttgtttgtttgtttgttgcatatatggattttcctttacatattgcaattctaacctaaaagttcactatacaatgggcccaaaggaggagccttgcaggctgcagcctgtttgttgcacgtggaatttgtttgcatattgcaatctgacctacttgaaatttcagttatttatttatgattctgttcctttaccttgtgagattcatatctttactatgcaggtttcttcttcagtgcacatgtgaaactgtacttcacctcccatatataattcagtgcagagagcattcttgaataagtatgaacccttattttgttggtcttctcgtcccaattgcggtatctcttctcctacggaagaggagaatggttgggaagatgagggcactgccagttgatgtgggtggagagcccgggtatgcaatccgcaactatcgattcaagcaaccggttgaaactcactgggaaggtgtcaccacgctcgccgagttgtttgagcagtcctgcaaggattatgtcaacatgccgctcctcggcaccaggaagctcatctccagggaacaggaatcatcactagatgggaggtcctttgagaagcttcatcttggagagtatgactggaagtgctacgctgaggtattcaagagtgtttgcaacttcgcatctggactaattcggctaggccatcagaagactgatcgtgttgctattttcgccgagacgcgggctgagtggcaaattgctctgcaggtaggcccctgtttcttcttctgtaattgtttcatatgctaatcttgtgtgttctatttctgtggagatgtgaagaaggaatgcaatggataaatacatagagcaaaattcctacgtagtgaaacatgcatagatagaaatgagtgttccagacaaggtttgtcctaagaaaccctgcaattgcaggtgttctgctctgctaatatgcttatctaaatagcggacaaccaacagtattcaactagtaacatcgtggcaaaaaaagtattgaagtagtaatacagaatgatagtgcagttctttatttaacgtaatcatgtaaattgagtaacggggtattcagatttgtcaatgggtggcacaacatttgattattatggtatgtgtgtaactgacagtggtaggttcgtaggtgtgacagcagcagacacaggaatggtatgggttaccgagcgtatatgtacatgctgtcataccgtgaaaagtatagtgcctcatgaagatactagtcattggaaatattgcacatgctgcatgcttatataaatcttaattggtttgtttaacatacatccaccctgactctgtttcctatttttcccccctattgctctctaatgttgagatcaaccttgttcctgttccattgagatctgaacttgagtttctctaagttactgttcttctatttgcaaggcatgcttcaggcaaaatattacagttgtcacaatctacgcctccttgggagaggaagcactgtgccactcactaaatgaggtaagtagacagtacagtcacttgtgtctcaccttgtctgtactgtagtctctgtcactaaatgagctaatttgcccttatgttctccagacagaggttactactgttgtatgtggtcagaaagaactgaaaaaaatgattgatataagtgggcagcttgacacagtaaagcgagttatctatatcaatgaggaaggaatctcagctgaagtttctttagctcaaaaaagcactagctggataattgagccgtttgaggatgtaggtagattgggagatacagcacctgttgatgcaaacatgcctctcccatctgacgtagcagtgataatgtatacaagcggtagcaccggattgcctaaggtttgcccaagcccacctgtttttccagtgttctcattttggaatatctttatgctacaaatttgccttttacttccaggactcatgttggcaattacttcatgatacacataccatgtgaaatatcagttaactgtattttctgcaaataaactaacatatactaaaaatgttttatagggagtaatgatgacccatcggaacgtcctggctacactttcagcagttatgaccattgtgcctgaaattggtaaaaaggatgtatacctggcctacctgccacttgcacacattcttgagttggcagctgaggtgactctaaaatagcatctatttacatcatcggttacttaagattaataactcactgtatggatttttttttcaggcactcatagctgctgttggggcttccataggatatggatcacccttgaccctgactgatacatcaaacaaaataaaaaagggaacactgggtgatgcttctgcactcaagccaacactgatgaccgctgtacctgctatacttgatcgtgttcgtgatggtgtgagaaagaaggtactgcactttaagctgtttcgtccaatgttcttcatctctttcttaatttactgattgttatttttcatattgggatggctttaggtggatacaaagggtggtgtagcaaagcagttatttgatgttgcctataatcgtcgacttgccgcagtcaatggaagttggctgggtgcatggggattagagaaactcttgtgggatatgcttgtcttcaaaaaggtgcgagcagttttgggaggaaaaattcgctttgtactttcaggtggagcacctctatcaggagatacccagagatttatcaatatatgccttgggtaagattatgaataccatcatcccatgttgttagttgccatccttgtttaatgaactatgtttaaacacaatgaaatcataaatttaaacacaatgaagaatgaactatgcttatttgtttcaacatgcatagagacctgggaattaacaagtttatgcaatttcagggttccaatagggcaagggtatggtcttactgagacatgtgctggaggaacattttctgagtatgatgacccatctgttggtcgcgttggtgctccactaccttgttcgtacattaaggtaagttttgtttttcttacccatattctaatttcagatgaattcgtttttggtagaaaccactgtgagttgaagtcttgaagatcgtccatatatgaaagaatatgttcactgttttggtttttgtgatcactgacaagctcatgctttgatatttgtaacacgctgatcttttttcagtaatctgattgatctccatattattctagtcactattatctgttggcatcacaccgatgcttgacatttttgtaattatattatccagctgattgactggtcagaaggtggatacttaacaagtgactccccaatgcctcgaggagagattgtcattggtggtcccaatgtaactaaaggctatttcaagaatgaagctaaaacaaatgaagtctataaggtatgttgtcttgttaccaatatgttcgatgactacttcacggctcatagtaataaccttctatccacaataatttacataacctttgtacctcatttatcttgtgaaggatgacgaaaaaggtatgcgatggttctattctggtgacatcgggcgcttccacccagatggctgccttgaaatcattgaccgtaaaaaggatattgtgaagcttcaacatggtgaatatgtgtctctcgggaaggtcagcaatagtcatgttctgttcagactagtagttgttagcccttcttaactgattggaccatcacaggtggaggctgctctgattgtgagcccatatgtggagaacatcatgatccatgctgatcctttccacagttactgtgttgcacttgtggtagctgcacacaatgagctggaaaactgggcttcgcagcagggagttacatacaccgatttcgtagatttgtgccagaagccagaggctgttaaagaagtgcttggatctctatcaaaggtttgtattctccactcacctcgtccatcaataatgtagggtgcatccttggatgaactctagacctggccctttgcggcatactaatttgaacgtaagctgaaaatttgcaaaccacgtccacttttagaatgaaaaattcaactctaatgacataaacttgctatttcaggctgcgaagcaagcgcgactggagaagtttgagatcccggccaagatcaagctgatatctgagccatggaccccggagtctggccttgtcactgctgccctcaagctcaagagggaagtgctcaggaagacatatgaggatgatcttgctaaactatacgcctgatgatcaatgctgaattgctgattaagcctactcgacgttttgacacaaccagctaccgtaggacagagctcttgtgagcaaactgaagatgctgataccggcaggaggtagcctgaaattttggagctgtggttgtttgatcttttggagctagcacaattatgtgtagcctcatttcacacttacttctgtgtctctgccatattctcttgtgaatttacattgttcaaaggaaaaaaaaaaggcattct</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0168700, RefSeq:Os12g0168700