Os12g0180600

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Revision as of 10:23, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0180600| Description = HAD superfamily (subfamily IG) hydrolase, 5'-Nucleotidase protein| Version = NM_001189891.1 GI:297728912 GeneID:92683...")
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Gene Name

Os12g0180600

Description

HAD superfamily (subfamily IG) hydrolase, 5'-Nucleotidase protein

Version

NM_001189891.1 GI:297728912 GeneID:9268382

Length

9245 bp

Definition

Oryza sativa Japonica Group Os12g0180600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:4059633..4068877

Sequence Coding Region

4059633..4059667,4060202..4060412,4060517..4060771,4060848..4060912,4061167..4061241
,4061487..4061622,4061708..4061800,4061885..4062030,4062121..4062221
,4062306..4062481,4063870..4063947,4064038..4064246,4064333..4064425
,4064935..4065018,4065452..4065553,4065638..4065725,4065803..4065856
,4065916..4066122,4067017..4067073,4067218..4067272,4067784..4067860
,4067988..4068054,4068430..4068491,4068588..4068650,4068749..4068877

Expression

GEO Profiles:Os12g0180600

Genome Context

<gbrowseImage1> name=NC_008405:4059633..4068877 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:4059633..4068877 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggtgtgtggggatcgagaagaaagattgctacactaggttaggaatacagatatgggaggcggtcttcgagagctcttcgcttggatggactaagaaatttgaagcttattgtcctggtgtaaagcatatggagtggatgcctaataagctcggccttgcgtatggcgatgaaagaggattgataacattattacaatacaacaaagagcaaggttgctttaaatccaaaatcatacatgacaagccatctagaggagaaacaacctcgatttcatggagtgggaacagctcttatctagcatcaagttttcacccaagagcaactgaagatgagacaagcaacagtatgatcattattcataagagggcaagtgcttcaagaacaaatgaggtgcaatcaattgagatggaaggccgaccaaacctaatagcaaagtttcaccctgttcataattgtcttttcatagctaagcggcggtggggattagacatcaagatcttctcgaacacaatcactggctttgaaaaagaatctgataagtgggttcaagttgcttccttggttgataacataatatctttctataaatatgatcactattccggatctgagtggactcctacagctaagcaaagagtttctttccaatacaaagtgaacactggaaatcgattcaaaaaaattctttccatgggttgctacatagactcaactattgcaattggttacacggatggttctattgagatctttacaaagaaaagaggaaaatatgttagtgctttaaacaagtactgggagcatcattggtcaaaagctaaatgctgggcatccaccattccttgcctatcctggcaatacaacaccgaaaagactcctaaggtgctagcagtaggaggggaacatggttttgttttgttctatgattttattgaagcggggccttacactgaaataccaaaccgtgactatgaatgggagactaactactacaaatgtccttccgaaccggacgaggaggtcgaggaggaggaggaggaggaggaggaggagccaacacatgatgtcactcaagagttaaactcacaagaagaagttgagcctgtgaaggaaacaaaatttgctatctgtcaacagattttctgtagcagaacagtaaatatggaagatatcaaagccattggatttaaaatggagtacacactcatcaattataaggtcacatttgagaaccttgcttatgttgaagccaaaaagagattagtaaatggaaagtatcccgaaaagatattagaatggaactacaacagtgagcatatgatcagaggtttgataattgacaagaaaaagggaaatataatcaaggtggaccactataataatgtaaaaatgtcataccatggcatgaatgagatgccatatgaggaatcaaaaaatgtttatggatctacatttatgtttgaagaacctgagtttgctgccatggatacaactttctcttgttgtgaaggatatctatttgcccaactcgttgatttgatggataccaatcctcaagaagtgccagcgcctacctacatgactttatacaaacatctcagggaagcctttgatcagggctataaagatggaactcttaaacaatctgtggccaatgaccttgctaggtacatcgataaagatccatcacttcttccaatgcttcagaacattaagaacaaaggaatctccacgttcttaataacagatagtttgtgggattatactgacattgttatggattatgcgctacatcaagataaagtgaacaaacacagctggcttcaatattttgacattgtctttacaggaagccgaagcttttttagtgaagaaagccacgtggagctgttcgacgtggagattgaaaccgggaaaatttcaaatcctaaagaatatcagttggggagatcgaaaacaaatcaagcacctaaggagatccagaaagtatatcagatagattgtaatttaatgccattaatgccatgtacagtcaatgtccacatgactcagactccccataattctcccacacatacacactcgtatcgagtaacaccgccaagggcagtgtacatgcatgcaaaaccacctcccgtaaagtccaaggatgaaaaatgtttagtttggattgtcgagggatggaatgatcggtttcgactgggaggagatgttggacatcttcaaagattattacctaataccaatgaccccaagcaggttctgtatgtgacacatcatattaccaaagagatgctcaacaacaaggcccaaggttggaagactatgcaaattatacctgagctggaaaaggaattgcaaattatcagagaacaggggtcaattcgacagacattctctcctactgagtggttctcaatatgcttacatgctacaatgattaagggtgattcagatgtgagaagaaagaagggaatggacagcgaacgtgaaactgctgaaaagaggctagcttcaaagtttaatgataaatggggtccagttatgaaggctgggaataagaattcccgatttgctcgcgaggtagaaagatcagcatggttatataccagcagggcgtcaaacttggctgctgagagatgttatgaacaatcagaccagttgatggcacatgactccgatttgttgagcttccatttgggcaaggactga</cdnaseq>

Protein Sequence

<aaseq>MGCVGIEKKDCYTRLGIQIWEAVFESSSLGWTKKFEAYCPGVKH MEWMPNKLGLAYGDERGLITLLQYNKEQGCFKSKIIHDKPSRGETTSISWSGNSSYLA SSFHPRATEDETSNSMIIIHKRASASRTNEVQSIEMEGRPNLIAKFHPVHNCLFIAKR RWGLDIKIFSNTITGFEKESDKWVQVASLVDNIISFYKYDHYSGSEWTPTAKQRVSFQ YKVNTGNRFKKILSMGCYIDSTIAIGYTDGSIEIFTKKRGKYVSALNKYWEHHWSKAK CWASTIPCLSWQYNTEKTPKVLAVGGEHGFVLFYDFIEAGPYTEIPNRDYEWETNYYK CPSEPDEEVEEEEEEEEEEPTHDVTQELNSQEEVEPVKETKFAICQQIFCSRTVNMED IKAIGFKMEYTLINYKVTFENLAYVEAKKRLVNGKYPEKILEWNYNSEHMIRGLIIDK KKGNIIKVDHYNNVKMSYHGMNEMPYEESKNVYGSTFMFEEPEFAAMDTTFSCCEGYL FAQLVDLMDTNPQEVPAPTYMTLYKHLREAFDQGYKDGTLKQSVANDLARYIDKDPSL LPMLQNIKNKGISTFLITDSLWDYTDIVMDYALHQDKVNKHSWLQYFDIVFTGSRSFF SEESHVELFDVEIETGKISNPKEYQLGRSKTNQAPKEIQKVYQIDCNLMPLMPCTVNV HMTQTPHNSPTHTHSYRVTPPRAVYMHAKPPPVKSKDEKCLVWIVEGWNDRFRLGGDV GHLQRLLPNTNDPKQVLYVTHHITKEMLNNKAQGWKTMQIIPELEKELQIIREQGSIR QTFSPTEWFSICLHATMIKGDSDVRRKKGMDSERETAEKRLASKFNDKWGPVMKAGNK NSRFAREVERSAWLYTSRASNLAAERCYEQSDQLMAHDSDLLSFHLGKD</aaseq>

Gene Sequence

<dnaseqindica>1..35#570..780#885..1139#1216..1280#1535..1609#1855..1990#2076..2168#2253..2398#2489..2589#2674..2849#4238..4315#4406..4614#4701..4793#5303..5386#5820..5921#6006..6093#6171..6224#6284..6490#7385..7441#7586..7640#8152..8228#8356..8422#8798..8859#8956..9018#9117..9245#atggggtgtgtggggatcgagaagaaagattgctagtaagttattcgatcaacttgcaggagctagccgtgcagagtgttatcttgttgctgcacctctccggccggcctctccaatagaaaaaggtaagctgctattcatttttacatctgtggcatggttccgtgttcgaatctagtctttgcaaaagaacgatgtctcctgccttgttcgaatccatgagcagcctccttcattagctcataacgcgcgtgtaggcacaatttaggactgttcatcggtggttttaggcacgtaagcccagcccaacccataaaccttgatgtttagcgtgcgaccatcgatctgcttgaagaagaaaactgattgattgattgattgtatttcgtttgtgtgggactccaggtgcagtgacaatggactatcagttggtcccttaccaaagttctttgcccgtgggtgaggaacactctgggatgcctccccaaattcatgcaatcgcttattgtccaacgccaattaatgtcatttgatttctacaaccaacgtagaagtttgttggccgtcagcactaggttaggaatacagatatgggaggcggtcttcgagagctcttcgcttggatggactaagaaatttgaagcttattgtcctggtgtaaagcatatggagtggatgcctaataagctcggccttgcgtatggcgatgaaagaggattgataacattattacaatacaacaaagagcaaggttgctttaaatccaaaatcatacatgacgtaagttcccatttattctcttcttactaacttactagataataatattactatatatcatcaataatgatattcaatacttgcacgtttgttgcttactacagaagccatctagaggagaaacaacctcgatttcatggagtgggaacagctcttatctagcatcaagttttcacccaagagcaactgaagatgagacaagcaacagtatgatcattattcataagagggcaagtgcttcaagaacaaatgaggtgcaatcaattgagatggaaggccgaccaaacctaatagcaaagtttcaccctgttcataattgtcttttcatagctaagcggcggtggggattagacatcaaggtaaaattagctccccaatatttttatcctcgtcgtttgtgcacacattaatttgttattgtttcattatctccagatcttctcgaacacaatcactggctttgaaaaagaatctgataagtgggttcaagttgcttccttgtaagtaaaatttgtcaagcttattaattttctaatcaaacaacatgtcatatccaatattgcattattgttgtatatagtgatcacgacggtgaaatatcttcaattaatttcatcatttcaagtaatgggtcgtcaaaatcatttgcaattgctaggtatgttttgcattatagctaaggtctgtcattgttcataaaaaaacagatattatagcataaagggaaattgattatatttaaaccgtacttcagggttgataacataatatctttctataaatatgatcactattccggatctgagtggactcctacagctaagcaaaggtaatttctaatttaactcatgtttatcataaagtttctattttcattagtttatttaaatgattttaggagacaaaatatattatagaccaactacccattcaccatataataatagcatccataaatatgataagttaacccgcggtttggtgatagatgtgccccgaaatctaagaatttgtgatatttactcgtaatattttataggactttgatatataaataattgttgctattggcagagtttctttccaatacaaagtgaacactggaaatcgattcaaaaaaattctttccatgggttgctacatagactcaactattgcaattggttacacggatggttctattgagatctttacaaagaaaagaggaaaagtatgtgtttcatgttcttcttatttgtttaagatatatcaagatattttttttactatttatgtacttgtttacctaaatgcagtatgttagtgctttaaacaagtactgggagcatcattggtcaaaagctaaatgctgggcatccaccattccttgcctatcctggcaatacaacgtaagattgacatcttatttattagtatttttagcatacaatcatgttttgatacgtcatctcaccatcatcattttatttcagaccgaaaagactcctaaggtgctagcagtaggaggggaacatggttttgttttgttctatgattttattgaagcggggccttacactgaaataccaaaccgtgactatgaatgggagactaactactacaaatgtccttccgaaccgtatgtactattagaagtgaaaacattgtttgtgtttctttaattaaagtatttatcactttttagcatatactgatccaagtttatcagggacgaggaggtcgaggaggaggaggaggaggaggaggaggagccaacacatgatgtcactcaagagttaaactcacaagaagaagttgagcctgtgaagggtatgtacaaaattggggtcagattcacataacttagattaattacttagactaaacacttttttctcttcattgtatgtgcagaaacaaaatttgctatctgtcaacagattttctgtagcagaacagtaaatatggaagatatcaaagccattggatttaaaatggagtacacactcatcaattataaggtcacatttgagaaccttgcttatgttgaagccaaaaagagattagtaaatggaaagtatcccgaaaaggtacgtttgagtaaaagagtcagtcagttgtattttgaaattcatttgttaagtttgtgagttattctaacactttttctgtgaaggttattgttggcatggagcgctgactctagttcgttataattagagtttgtgttagtttgtcttagtacatggatacttggatagtacccatatggtattgtagcaacgagcactattggattgggccccctgctacaggttaggaattagagacaaaaacaagtagtttccttataaattagattgatatggttccttgatattacatataattaccaccttttttgacaaatgggtccttttcaaaaacttattttaaaaccagaccatggcaaaaacttcacaaaaataggccatcggctcagcgccagccatgcactttgacgctgacccccctacccacatggcggccgagccgattcccctcgccggcgtggcaatactcagcgccagcgccaaccgaaatggtgctgaaccgtctaacctcagcgccaatgggggttggcgctgagctaggctactaaggccaatgcggccgccccacccaccatctctcttcttcctctcctttccttctctcccctagggctgctgccatgtagtgcaacatcgttgacgacaaccatcttggagccattgcatatctcaatgccaaagggctcatgctgtgaggacgtcgatggggccagccaagccactgccattgctctttgcctagtcaaggaagttggcctagctgctgtttggggctgttgaatcaacgttgaggacaaccacaacaccaccgatggaatggcttgtcgacaaccatgcgtttttctgaagttgcaaccatggccaccccctgcagctcgaggatgagttgcccaaaaggagggataagatattatgggcgtggagcagctccatttagttataattagggtatgtcagatacaaaaaaaaaaccatggtattacagtgctgagcactatttgcatgggcctcctgttgtgcaggttaggaaccagatgtaagaataagtaattccttatagattaaattggtttggttccttaatattagagaaaggtattttagaggtcaagttattcctctccatgggattgtatctcttttgattaagcaagaaacaaaaaatagttccctcctccacggccgcagctctctctagacccccgcaaaccttagacaaaacaacatccactctatactaactgtcagtcatgatatcatcttttactgttgcactgtttaatctacttgtttaaatactatatgagatcaaatttatcatagtaagagtaattttactttgttagttatattctaatttaatttattcattttctattgaatagatattagaatggaactacaacagtgagcatatgatcagaggtttgataattgacaagaaaaagggaaatataatcaaggttagcaaaacaagtgaactttttttgtatacaaacaaaatagacaatggttaattgactctatccaccttttttgtgattgaacattaggtggaccactataataatgtaaaaatgtcataccatggcatgaatgagatgccatatgaggaatcaaaaaatgtttatggatctacatttatgtttgaagaacctgagtttgctgccatggatacaactttctcttgttgtgaaggatatctatttgcccaactcgttgatttgatggataccaatcctcaagaagtgccagcgcctacgtatgattttgaccaaacattatttatatagtgaaagcatttcaattttcattaacattatttcaatgtgatatttgatgatgcagctacatgactttatacaaacatctcagggaagcctttgatcagggctataaagatggaactcttaaacaatctgtggccaatgaccttgctaggtatgagtagcaattttcagtcatatgattggtataattcaaatagtgctagatgtggtacatgtaagaaattatgatctaagaatgaacaagtctatgccaatttctttactatcctaaatagcacgaccttttaatttttgtttgattaaaaggagataacttgggctgctatatatagttgtcatcttcggctacaatctatatctagcccatctctaagaaacaagacaaacaaataaccagccctataaacgcatccttggctacagtttatatctagcccatctcttaacaagcagccaaacaaataaccaatccttttatagactaatcaattttctcctgatctgttaactaagttacgtggaaagcacaaatattgaaattctcttcattgcccctatagagcacacttatgacatgggctcgatctgtcattgatttgctacttgaatatatttcgcatgttatccatggcactaatttttgtagtttgaaactgacaggtacatcgataaagatccatcacttcttccaatgcttcagaacattaagaacaaaggaatctccacgttcttaataacagataggtatgtggtttatgcattttcaaaattataccactgtgatcgttggttatccctttagtgcagaattgaactacttcaatgttagggaagctttaggtatggatttagcaagagagataggttttggggctatgatgagctacagctagctgattcatcttctcatttatagctgaaagacaaagatacacaacatcctagtggcttgcttataactaagactcttcacttgacccactgacttgtagcctaagactttgactcactagcttactccctaaggaaagctattcccaaaggaaaagacctgacttattaactcaaactaactacaacaaggattatactaacaaagttttcagttcttctcattccacttattttgttttaagtgctatgtcttgatattcaacatatgtgcctgcttttgtagtttgtgggattatactgacattgttatggattatgcgctacatcaagataaagtgaacaaacacagctggcttcaatattttgacattgtctttacaggaaggtttggtgatgtctatttcacttctctacttcaagttactcacatattttgtttatatttatttagaaaaatttttgcttgcagccgaagcttttttagtgaagaaagccacgtggagctgttcgacgtggagattgaaaccgggaaaatttcaaatcctaaagaatatcaggtaaacaaagtgatattaaataatcatcaagatggctctattctcttgtgtgtgtaatccatgtgattcttacgtagttggggagatcgaaaacaaatcaagcacctaaggagatccagaaagtatatcaggtaccctctgttctcccattcgaatgtatgtaataatccttatcataattattaactagatagattgtaatttaatgccattaatgccatgtacagtcaatgtccacatgactcagactccccataattctcccacacatacacactcgtatcgagtaacaccgccaagggcagtgtacatgcatgcaaaaccacctcccgtaaagtccaaggatgaaaaatgtttagtttggattgtcgagggatggaatgatcggtttcgactggtatgacaattgagggacgaaactaaaccattgcaagagtcaagggtcgaaagtagactttttcctcctagataagagcatcaagttagtgaaatgctgcataaagtgtacatatagtgatattgtggtggctatagataaacaaaggaggggtaaatgaagctacactacaattatgaggataagaaccctgccatttattaaggacaattaatatgaccggttgcatgcacaacaatagtaggtcagggaagtcagcagcacatcagcctcgcttttcagtggaggcatattataagactaatcaggtagctgtagtttattaggtaaagcaggctagattttgcatgctcatatttgattaaaaccgtaggactaatcaggtagctatagtttattaggtagaacaggctagatttttgcatgctcatatttgattaaaactgtaggacttgcatatactcccaaataaaaaggaaaggagagaacagagaaagaaacctcaagaaatcagacaaaagcattccaattgtaaatgaccttgagcttacccgagcactctgatacctggtaacaaagaatgcacagaaaatgttagttatgaagccattgttctgttacaaactctgagacgaacccaaaaaaaaaacagttgcagctaaacaaaccatgggccacatttcatgtcacttttgttccgtaccaaattcttgtcttgttagcataatagattcatcctgaattcatttacccatcatggtactgtaattatcaccaaatttagtccaaaataagccacatactatgcattacgagaataacatcttataactttattacaattgcaacttagtaagctattgtttattttgaggcacttttcggttttttcagggaggagatgttggacatcttcaaagattattacctaataccaatgaccccaagcaggtatcatctttgccctatcacaaaattcaatttactttagatatagttggtatacatagagtttttctttttcatttgatgatatttaggaatgttttcttacaaacagtctaacaatgcaaaattcttcacgattatatataggttctgtatgtgacacatcatattaccaaagagatgctcaacaacaaggcccaaggtatgtgctattcacttgctatttttaggtgacctagaatatggtggatgttataaacttgactgaatataatagtttgggtctgttagaggaagggattattatactatcatacatcatcatggaaaatcatgatgaatgggtgccgactctagctggcaccaaaacagccacaatacatgcatctgggaatgatcaagcacaaggtggtacccaggcgtataattgtacttttgtagcaatatcccaaattatcctctcctgttttaactctaaaaataggagccagtgaacatagctttacgagttatatacataaagagtactcagcaaaatcaagtgacaaccatcattttccttaacacttgatgtgcatccagcacaacgaaaactggaagaaattttatatgcttgaagataacgatataatgtgttttgtttttattccattagtctggatttttccatttatattatttcagtaataattggtcgtgctgcattttgtaaggttggaagactatgcaaattatacctgagctggaaaaggaattgcaaattatcagagaacaggggtcaattcgacaggtattctttttctaaaaaaaataaacacaaaattgctacaatgtttcggacagatggttagcccatttcccctctcaaagtggagatcagtacatgttctgatgttttttgcgtgaaaacttaaaagacattctctcctactgagtggttctcaatatgcttacatgctacaatgattaagggtgattcagatggtaacatgaaaaatatattgaataaaatgtctaaccaatatttaatgtcttctctatttattgttcatttatggattatctagagtagcatgcaatcattctgtttgttagcttctgcttaattgcttatggcttgttctttccaatttggactctccaacacagattattattcgtgccagagtgaaatcaaatagtgtagaagataaaatctgtatgctcagaagcaccactgagtaagacaatagtgttgttcattctactttcttcctattcaatattttttctctctcgaatgattttgcagcaaataagtaattgtgtttttattttggacagggttgatgtaatggagaaaataaacaaactgaccagtgagaagaaagaagggaatggacagcgaacgtgaaactgctgaaaagaggctagcttcaaaggtaactttgcacacttatttcaaccatctgcgacgctatggtagttaatttaggaattagtatcagctaacagcagattgttttgttttatttcagtttaatgataaatggggtccagttatgaaggctgggaataagaattcccgatttgctcgcgaggtggcatttaatttgttgagattttgttttgaggtgttatacaacagttaccattagcagttgacagtttctcttttggctttattccgttttcgcaggtagaaagatcagcatggttatataccagcagggcgtcaaacttggctgctgagagatgttatgaacaatcagaccagttgatggcacatgactccgatttgttgagcttccatttgggcaaggactga</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0180600, RefSeq:Os12g0180600