Os12g0233400

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Revision as of 10:25, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0233400| Description = Zinc finger, C2H2-type domain containing protein| Version = NM_001072982.1 GI:115487925 GeneID:4351836| Length = 468...")
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Gene Name

Os12g0233400

Description

Zinc finger, C2H2-type domain containing protein

Version

NM_001072982.1 GI:115487925 GeneID:4351836

Length

4684 bp

Definition

Oryza sativa Japonica Group Os12g0233400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:7305705..7310388

Sequence Coding Region

7306040..7306132,7307056..7307081,7307349..7307433,7307517..7307726,7308067..7308189
,7308846..7308903,7308995..7309068,7309607..7309695,7309771..7309840

Expression

GEO Profiles:Os12g0233400

Genome Context

<gbrowseImage1> name=NC_008405:7305705..7310388 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:7305705..7310388 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccgaggcgggagggtggtcgctctcgctccgccgcctacctcgtcctcttcgcttcctgccttttagctgttgcggcggcatcacaccaggaatttcatgaagctgctggatccagaactcttcttatgtcacatgaacacacaaatcaagtgcattgctcaagggaaagaagccgtgcagcttggaaagctattgatgagtatttgatgccctttgtggaaaaagagaaatatgaactcccaagcaaatgtagacttcatcctggtaatgacatgtttcgggaacaggagcagcataagattcactttgatataaatgaatggcgctgtggtttctgcaagaaagccttccgagcagagaagttccttgatcagcattttcacaatcggcacaataatcttgtggataatagtcaaggaagatgcttggctgatctatgtggagcacttcactgtgatctgatgttggagtttaagaaaccaaagagtaaatgcagtgcaactgcagctgcaaggaatcgtcatctttgtgagagccttgcagatagttgctttcctattaatcaagggcaatctgccagccgtcttcatgaatttctcttgcgccaattctgtgatgcccacacatgcaagaatggctctaaacctttccccaaaggtggcaggaaacaaacaaacagattctacctggctctctgtgccttaacaatagtacttttgccactgttctatctcatagtattcttgcaccagagggaaatgaagaaaggcggtcaaaatttaagacgaatttcgaaagttgtccaaaagaaaaaaccatcttag</cdnaseq>

Protein Sequence

<aaseq>MPRREGGRSRSAAYLVLFASCLLAVAAASHQEFHEAAGSRTLLM SHEHTNQVHCSRERSRAAWKAIDEYLMPFVEKEKYELPSKCRLHPGNDMFREQEQHKI HFDINEWRCGFCKKAFRAEKFLDQHFHNRHNNLVDNSQGRCLADLCGALHCDLMLEFK KPKSKCSATAAARNRHLCESLADSCFPINQGQSASRLHEFLLRQFCDAHTCKNGSKPF PKGGRKQTNRFYLALCALTIVLLPLFYLIVFLHQREMKKGGQNLRRISKVVQKKKPS</aaseq>

Gene Sequence

<dnaseqindica>336..428#1352..1377#1645..1729#1813..2022#2363..2485#3142..3199#3291..3364#3903..3991#4067..4136#ccgtctccgcctctctcgctcgcgccgccggccgccggcgatcctcccgccggagcacgctcgcctgacctggctgcctccgccgcttcgaatcgaagcccgcagctccccctccctctcttcctctccagacagtcccctactcccctctgctgcactggacttggggtggggtggagcgggagatccatccaagatagctcggagtgagtgatttccccttttttctggtaaggaagtcctctcctgcatgatttttcagttcgaatcacagtgagaacaagtacctgaggtcccctccgattattctccagaaggttgtagaagcttggaggatgccgaggcgggagggtggtcgctctcgctccgccgcctacctcgtcctcttcgcttcctgccttttagctgttgcggcggcatcacaccaggtatatatctatcttgtgctggattggatcggtagtcttcttgcttgctgaattagagatccgtacgttcagttcctgttatttcagggtgcagaagaggtgttttttcttttgtatgtagaattaagctttaggttactttgatttgataagtataaatgaaatgattcaacattctgagcttgggctcaacttgtgagcattacgtgagacggtgtcattcattccattaagagaattaattggcgttgggtccgcatcagctagtctatctgcagatttgttctttgtcttgcttcatgcctaaagggaacattgcaagcttgcctatgttgatatgatttgcttacctgacttgttttccttgtataatttgctttgtgatgtccgtcgtggtttcttgcaacgattgattgtgagatggaaattcgccgtggtaatttattatagtagtatttttatgcaaaacaaaaaggagagctgttgcatgtaaacgtttctctggtgtccctgctactagttatttcagtaaaatgttgatactaatggtgtgcatgttgagtaggcatgttttttatgtgaagttaagttcttatggtaggtgtgcagcgtactgccatcaattatttgatataccatcctatgttcaatcatcacttcctttgagttgttgcatatacttgcaatggctacattctattagaaagcagcacactgttatttgtattagctgataagcaaatgacatttcaggatatgaatatgcatgcttctcatgataaacacgaaataagtaaatctttactttgttacagtgcaaattacaatttgctgctatatctactagaaaattctctttgattttaagatgaacacctaattcccttattctagctaatctgaatattccttttgtgctataggaatttcatgaagctgctggatccaggtacttaagctcacaaactcatatggagggaaatatgttatttaatgttttattttatacatgccagtctaaattctaaaataagaccctcacctagtccctcccaaaattgtaccttgccttttcaaggcatgacactacaagcaagatccttgccgagattaggtcctcttaattcctaaagtagttcattccttggagccttaatggaaattggaaacgctcttgcttgactcatgaccctctgtccttttaacttgattctagaactcttcttatgtcacatgaacacacaaatcaagtgcattgctcaagggaaagaagccgtgcagcttggaaagctattgatgaggtaaagcatgtgtaacatgaaaatgcccagtgcattggtgcctctataataatatgacagattaacatttcctttctatgcagtatttgatgccctttgtggaaaaagagaaatatgaactcccaagcaaatgtagacttcatcctggtaatgacatgtttcgggaacaggagcagcataagattcactttgatataaatgaatggcgctgtggtttctgcaagaaagccttccgagcagagaagttccttgatcagcattttcacaatcggcacaataatcttgtggataatgtatgattcttaccgatttgcatgagactttcaatcatccgttccataaatcacttgtactagtttcatatctgctttctttctttgatagtattggtgtagcctgtgtggtttctgccacaagtgtgattatattctttcccttcctcattaattgagaaaataacaaattcaaggctcttcgaagttccatttataactatttacacgagacagtcttctgtgggattttcttggcaatgcatctcctagtgcagatctaacttgtttaatctatttttgtttcttcattatgattggccatgcttagaaatgctgattgttacactatctcctttagagtcaaggaagatgcttggctgatctatgtggagcacttcactgtgatctgatgttggagtttaagaaaccaaagagtaaatgcagtgcaactgcagctgcaaggaatcgtcatctttgtgaggttcttatccttttgttttaaccattctaaatccatttttttccggggacattctaaatccatttatttgtttgatttcattatattcatatagcatatcaagaagcatattcatgttctgctattactaatttgcattttgtttttatcttggactgtttgtgtgtaaatattactattcccatttcctgctctacatatcgaggattgcattagataaactacacatcattgatatgttataacttttgtctttagctattctcatcttatgtgacatattttttcctttgaaactaatattgttctgcgctgtgatcttgttgagaagcaccagattatgcatgcaggcatattggtgtacttgttatgttaattagatgaaaatgagggacctttggatagagattttcatgcttatctatcccctaatcaacgagcagactatgggtgctgtacatgctttacttataagcactatttgtatttaccttaatccattattgcaatggtattgaagttttctgtgtcctttatctttcataaatcagtttgctaccttggttcttatggttaaacaatagatgtgatatacattgagcattttctggcctactgatggaaattatctaactcagttttgcttctgctaatagagccttgcagatagttgctttcctattaatcaagggcaatctgccagccgtcttcatggtaagtgagcaactgagcactacttgaatctaattatctgtcctcatagcactctcgtgtagctttcttgcttatccaacttgtttcacagaatttctcttgcgccaattctgtgatgcccacacatgcaagaatggctctaaacctttccccaaaggtggcagggtgagagaattcctaacttggaaacctttgattgattcagttatgggtttctcctcacaaaacaaaaaggattctgaactttttgctgcattattgagctacatatgaaaacatgaattttaagcaggatctgattccaataaaaatcagcaaataacatttggaataagttaacagttttttcatctcttgttctggactgtggaagctttataatatttttattttgtgtaatatcaactttgattggagtatgctgtaaaaaatttttgtggcgtattgcagtttaaggttatcatactttcatatagcatttacactttaaacatgccaaatgtatgcccttgtagttcacacttgaacagataatgcgtgatcaatgaaaaataatcattatagcacttggacagaactcttttatttctttatccaggtccaaggtcctggatatttctcattgtgtaactatactccttttactagctaaaggaataaaaagtatctgaaatcttatctttgtacttttccttttgtgcagaaacaaacaaacagattctacctggctctctgtgccttaacaatagtacttttgccactgttctatctcatagtattcttgcaccagaggtctgtgccacaagaactataattatcttttacttcaaacattctctggtctgatcctcatattttgtggttcagggaaatgaagaaaggcggtcaaaatttaagacgaatttcgaaagttgtccaaaagaaaaaaccatcttaggtacctaattgtaagttgccctccacagtaaagcgtgataaaatatttattcacatttttgcgcatgataggaactagtatctacctggtgctattatatcttctctatttttttttgtgtcaagatgctcatgctctttctcaagttttcctaacacatgagcatattattcagaggggaaaaaaatctgtgtggactaacttttcctattttcagccatgccctgcttcttccctatgcagcccctcatgcagatgcaatcgtcaagaagcaaacgtgtgctttttatgtgaggtcaagcaagataatttttcgatgccttgcccaagctggagtcttgttgacctctgtagttcatcccttgaaatgtgggtttacatgaccgtttacagacaatctcatgagactatatgtacattgaagaatgaaaatgtgtatccaatatttagtaggctctaatttgaatcctatgggcttagattaatggaatagaaacatccccatataatttgtaatatttgcaagaggcttggaggtaattgtcatt</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0233400, RefSeq:Os12g0233400