Os12g0236500

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Revision as of 10:25, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0236500| Description = Similar to Aspartyl aminopeptidase-like protein| Version = NM_001072995.1 GI:115487951 GeneID:4351851| Length = 5344...")
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Gene Name

Os12g0236500

Description

Similar to Aspartyl aminopeptidase-like protein

Version

NM_001072995.1 GI:115487951 GeneID:4351851

Length

5344 bp

Definition

Oryza sativa Japonica Group Os12g0236500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:7483486..7488829

Sequence Coding Region

7483628..7483849,7484167..7484307,7484401..7484475,7484737..7484913,7485561..7485716
,7485812..7485895,7486620..7486692,7487775..7487977,7488077..7488155
,7488357..7488495,7488590..7488677

Expression

GEO Profiles:Os12g0236500

Genome Context

<gbrowseImage1> name=NC_008405:7483486..7488829 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:7483486..7488829 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcctccgccgccgtcgccgtcgcccccgtcgtctccgacctcgtcgacttcctcaacgcctcccccaccgccttccacgccgtcgatgaggcgaagcggcggctgaaggcggcggggttctcgcagctgtcggagcgggaggagtgggcggggctccagcccggccgcaagtacttcttcacgcgcaaccactccaccatcgtcgccttcgccatcggcgccaagtatgctgccggcaatgggtttcacataatcggtgcgcatactgacagtccatccctgaagctcaagcctgtctccaaggtaacaaagggaggttatcttgaggttggggtccaaacttatggaggtggcttgtggtacacatggttcgaccgtgatcttactgttgctggtagggtgattgtaagggagaagaaggatggtgcagtgtcgtatgcgcataagcttgtaagagtgcaagagccagtcatgagaatccccactttggctattcaccttgacaggaatatctcctcagaaggtctcaagattaacaaccagaatcatcttgtccctgtgctggccacatctgttaagaatgaaatgcagaaattagtggcagaaaatggttcagagtcatctgagagtaagaacaccaagcatcatccactattattgcagttgattgctaaagaagcgaactgcaagcctgatgagatatgtgactttgagctgcagttgtgcgatacccagccaagtactgtagcaggtgccatgaaagaattcatcttttcaggaaggcttgacaatctttgcatgtcattttgttcgttgaaggccctaatagaatcgacttcttctgaagaatctcttgcgcatgaatctggtgtgagaatggtggctctatttgaccatgaggaggttggatctgattcggctcagggagctggttctcctgccatgttagatgctttgtcaagaatcacagggtcttttaactcttcaaattcgaggttgctagaaaaggctattcaaagaagctttctagtatctgcagatatggcacatgccttacaccccaattatatggacaagcatgaggagaaccaccagcctaaattgcatggaggactcgtgattaaacacaatgctaaccaacgatatgctacaaatgctgtgacagcatttatttttcgggaaattgctgagaggcaccatctacctatacaggattttgttgttcggaacgacatgggttgtggttcaaccatcggcccaatactagctagtggtgttggtattcgtactgtggatattggagcaccacaattgtcgatgcacagcatcagggaaatgtgtgctgtcgatgacatcaagcactcgtacgaacacttcaaggcatatttcgaagagttcactgaattggacagcaaagttaaagtagattgctaa</cdnaseq>

Protein Sequence

<aaseq>MASAAVAVAPVVSDLVDFLNASPTAFHAVDEAKRRLKAAGFSQL SEREEWAGLQPGRKYFFTRNHSTIVAFAIGAKYAAGNGFHIIGAHTDSPSLKLKPVSK VTKGGYLEVGVQTYGGGLWYTWFDRDLTVAGRVIVREKKDGAVSYAHKLVRVQEPVMR IPTLAIHLDRNISSEGLKINNQNHLVPVLATSVKNEMQKLVAENGSESSESKNTKHHP LLLQLIAKEANCKPDEICDFELQLCDTQPSTVAGAMKEFIFSGRLDNLCMSFCSLKAL IESTSSEESLAHESGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITGSFNSSNSRL LEKAIQRSFLVSADMAHALHPNYMDKHEENHQPKLHGGLVIKHNANQRYATNAVTAFI FREIAERHHLPIQDFVVRNDMGCGSTIGPILASGVGIRTVDIGAPQLSMHSIREMCAV DDIKHSYEHFKAYFEEFTELDSKVKVDC</aaseq>

Gene Sequence

<dnaseqindica>4981..5202#4523..4663#4355..4429#3917..4093#3114..3269#2935..3018#2138..2210#853..1055#675..753#335..473#153..240#gcgagcttttgctcaggctcgggttcggctctcgaaacctcgagctgctcgctgagcctcgacctttttttttgacagccctacaccgatccctgcataccaaagtcggcggctacacctgactcatcgatccactactgccgccgccgcccatggcctccgccgccgtcgccgtcgcccccgtcgtctccgacctcgtcgacttcctcaacgcctcccccaccgccttccacgccgtcggtacgccccccttcccccccgattcctatttcccttccttcttcctcctttggtgtcgatcgacgcaaactggactgtgaatgtgttgtctcagatgaggcgaagcggcggctgaaggcggcggggttctcgcagctgtcggagcgggaggagtgggcggggctccagcccggccgcaagtacttcttcacgcgcaaccactccaccatcgtcgccttcgccatcggcgccaagtgagcctctgctagatccacttttaccttgtcctcacactccttggattgctcgaggctataggattatttaatttgtcatactttttctattttttttttgtgaagaaacttatctgtagtaattctatacggttttgtggatcatgaatgtcctgattagtgcattatttattattggattatgttgatgtgttgtaggtatgctgccggcaatgggtttcacataatcggtgcgcatactgacagtccatccctgaagctcaagcctgtctccaaggtttagagtttgaactcttcgtagttgatttctgtttatgttaattggcgtggtacaattcgatgaattggcgattaaatcctgcttcttgccacgcaggtaacaaagggaggttatcttgaggttggggtccaaacttatggaggtggcttgtggtacacatggttcgaccgtgatcttactgttgctggtagggtgattgtaagggagaagaaggatggtgcagtgtcgtatgcgcataagcttgtaagagtgcaagagccagtcatgagaatccccactttggctattcaccttgacaggttggtgttagcaacttatccatttttgtgttttattcctgtgattaagtccatgaaaattggacctacattaaattttaggtcgtaattttgttagtcctatattgctagatcggaacagttaatcaacctaaactaaagtaaactataggtcacatgtgtgtccaattgcctatttggtttcttgtggcaacttatttattctacctactatcctgtagtaattaatgtttgtcaaagaaaaaaaatctggactaaaccaaagataacagtaggtcccaaatacagaaaatcgacgacatgcttcaggtatcagtttcagcttgaccctgtcagcatgcacttgaaccttttaccattagaaacttagagtagaaatccacacttcagctaactgagccagatgcctaactgaaaacatgcatcaccaatttaaaggaaactcaaagtaatacttgtacactctgacatatctagtttggatgtgttcgcttaaactgaataagagaaggaattgccatatttgatcagtagtaagatagctcgtatacagatcgtgatgtccaacattatttcacaacatcctggtccatttgttcatcttgtattgaaacattttctacagaaatgccattatgttcttttgtttcaaaatttagttaatataaattttctcatggcaacgaaaactgaaaatttgacatatcatattgattagttatgtgaactttaggtcttcgctaatgtaatgtacctagctgtttacatgtaataacaacgatacatgtggataaaaccttagcttttagcaccttacacaattgctcttaacacgtctaaactaatttaccgttcacagattaactttgaagaaatgttttgagaataaatcactatatttaattagtccaatactttggtttgtcatgcccacttgccagtactttgaaatgtcattctcaccatgcatttactttcaatagtgcaacctatgctggacataaatcctgttatgtttcgatgcttttattgtttataatagtaaagagtaatttcatttgtcttgcttaaattatgtacaggaatatctcctcagaaggtctcaagattaacaaccagaatcatcttgtccctgtgctggccacatctgttaaggtgatttgaatacattggccagtgtctgagtttccttttttttatggaaactagaaatgtatcccattaatatgacatgttaggaaatccactaacaagcgttctagatacaaactctggtaaatcttcatgcctcttcatgccaaataaacaggctcaaagaagaatctaaagccatgctgaacttggctagttcatgcacaaaattgcattacaatcactaggaccaaacatgagattaataacatccaaaccaagcaaataagtttttttggcttctataacaattactgtgccattgaagcaattagtccttgaaagtaactattgagtaaatatggcaatctggagcaatacaatattttgttcgataacaattactgtgccattggagcaattagtccttgaaagcaaatattgtattttgttcgttgaaggtttgtctatgctgttttcagttcacctatagttcctacatttatgaatttacttatttgaaatactattgcttgattttgtgtaaaatctagctccttaattacgccactttgtaaattttctatgttgttgtgtttgcaaatcgtattttctgctgagggaggaaattactttcatgcaagcgttttgctaaagaacgtttaaatatttctttcacttcaacgaacaaaatacaatatggcaatctggagcaatacaagactgaaggcaatacaatattttgcagaatgaaatgcagaaattagtggcagaaaatggttcagagtcatctgagagtaagaacaccaagcatcatccactattattgcaggtacttattttgtgtagtatactaattccattggacaaataggttcacaaataatacaaaactcctgatatatctttcttttaaatttgttgcagttgattgctaaagaagcgaactgcaagcctgatgagatatgtgactttgagctgcagttgtgcgatacccagccaagtactgtagcaggtgccatgaaagaattcatcttttcaggaaggcttgacaatctttgcatgtcattttgttcgttgaaggtttgtctatgctgttttcagttcacctatagttcctacatttatgaatttacttatttgaaatactattggttgattttgtgtaaaatctagctccttaattacgtcactttggaaattttctatgttgttgtgcttgcaaatcgtattttctgctgagggaggaaattactttcatgcaagcgttttgctaaagaacgtttaaatatttctttcacatgtttctaagtgtattattacatttacttaatttgaactagtacggggattttttataagaaaaagaagatagagaaacaacaaacaatgacatcaaaattaagttgtaaaatttgctggaagtaatagctcatcttctcaccttctattcattccaaatttgtataatggagcccctcttgtatcatgaatcgcaatcgtgattgctattgaatgggttagcgacctagcatcctttataactctagttaagtgctacaccgtgtcgtcattttgtatatgtgctgctctagaacagaaagatacctttccgttgtgtactttaaggcaataaagttagtcaactgcatccctttctaaagaactaattatttctttcttcttgcgagcaaataatatgcaattacttaacccctatactgtttcaggccctaatagaatcgacttcttctgaagaatctcttgcgcatgaatctggtgtgagaatggtggctctatttgaccatgaggaggttggatctgattcggctcagggagctggttctcctgccatgttagatgctttgtcaagaatcacagggtcttttaactcttcaaattcgagggtactaactgattttcattacgcaagaataaagcatatatttctgtttcagttggtaaccagatctgttactttcattaaacaattttgtttttgttgaccatgtaatgtggcatggcttaaaggatactttaaataaactgtttgcacatattgaaatagttctccccagctccattatgcacattacaaacaactagactgtttgcagtctgtgtacctatttaggtttacattgtgacaatctgcttttaattttcagttgctagaaaaggctattcaaagaagctttctagtatctgcagatatggcacatgccttacaccccaattatatggtaagattttctttgcatcagtatctgagatttgcagttatacagcaacaattaaattaaaccttttgaacctatttctatttatctttgcaggacaagcatgaggagaaccaccagcctaaattgcatggaggactcgtgattaaacacaatgctaaccaacgatatgctacaaatgctgtgacagcatttatttttcgggaaattgctgagaggcaccatctacctatacaggttagttcatgtatgaaggatccttctataacaactgtgaaatagtgctttgttctgaactaatcaagttgtcatagtctctaagttcaaaaatatgtctggctaatctattgaccttgactcctgctctatcaatatataaggcaaatttcttgccttccttttcggaaaaaagaatctattgaccttgagatgaataaacaaattagataagctcttgaacagtttgtgcttatccagtttaagaacaaggggctattacttgtttaaacaaattggaaatcaataaaatctaatttctgcattcatttttgcaggattttgttgttcggaacgacatgggttgtggttcaaccatcggcccaatactagctagtggtgttggtattcgtactgtggatattggagcaccacaattgtcgatgcacagcatcagggaaatgtgtgctgtcgatgacatcaagcactcgtacgaacacttcaaggcatatttcgaagagttcactgaattggacagcaaagttaaagtagattgctaagatgaagtagtgaccatactggatcagccgactggtggtgttgctttgacatatcctgtactgttgcaaaataaatgaacaataaattgggttacattatctcgtcacaggaatctcatggagaatatattttctggctgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0236500, RefSeq:Os12g0236500