Os12g0240900

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Revision as of 10:26, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0240900| Description = Similar to Caffeic acid 3-O-methyltransferase (EC 2.1.1.68) (S-adenosysl-L- methionine:caffeic acid 3-O-methyltransfer...")
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Gene Name

Os12g0240900

Description

Similar to Caffeic acid 3-O-methyltransferase (EC 2.1.1.68) (S-adenosysl-L- methionine:caffeic acid 3-O-methyltransferase) (COMT) (CAOMT)

Version

NM_001073009.2 GI:297612925 GeneID:4351866

Length

5218 bp

Definition

Oryza sativa Japonica Group Os12g0240900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:7801190..7806407

Sequence Coding Region

7801190..7801489,7801885..7801949,7802272..7802597,7805971..7806407

Expression

GEO Profiles:Os12g0240900

Genome Context

<gbrowseImage1> name=NC_008405:7801190..7806407 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:7801190..7806407 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtgagcccggtggtacaccgtcacgccgccggcggcggcagcggcggcgacgacgacgaccaggcttgcatgtacgcgctggagctcctgggagggtcggtcgtctccatgacactcaaggcggcgatcgagctcggcctcgtcgacgagctcctcgccgccgccggcgccgccgtgaccgcggaggagctagctgcgcggctccggctccctgctgcggtcgccgccgcggcggcggtggaccgcatgctgcggctcctcgcctcgtacggcgtcgtcaggtgcgcgacggaggccgggcccgacggcaaggcccgccggagctacgccgcggcgccggtgtgcaaatggctcgccgccgggagcagcagcggcgaagggtccatggctccgcttgggctgctcaacctcgacaaggtgttcatggagaactggtactacctgaaggaggcagtgtcggagggagggacagcattcgacaaggcgtacggcacgtccttgttccagtacctgggccaggacggcaacgagccctccaacacgctcttcaaccaggccatggccagccactccgtcgtcatcaccaacaagctgctccaattcttccgcggcttcgacgccggcgccggcgtggatgtgctcgtcgacgtcggcggcggcgtcggcgccacgctgcggatgatcaccgctcgccacccccacctgcgtggcgtcaactacgaccttccccatgtcatcgcgcaggcgccgccagttgaaggtgtggagcatatcggaggcagcatgtttgaccatgttcccagtggaagcgcaatcttgctcaagtggattctgcacttgtggggggacgaggagtgcgtgaagatcctgaagaactgctacaaggcgctgccggcgaaggggaaggtgatcttggtggagtatgtgctcccggcgagcccggaggcgacgctggcggcgcaggaagcgttccggctcgacgtcatgatgctgaaccgcctcgccggcggcaaggagaggacgcagcaggagttcaccgacctcgccgtcgacgccggcttctccggcgactgcaagcctacctacatcttcaccaacgtctgggctctcgagttcacaaagtaa</cdnaseq>

Protein Sequence

<aaseq>MVSPVVHRHAAGGGSGGDDDDQACMYALELLGGSVVSMTLKAAI ELGLVDELLAAAGAAVTAEELAARLRLPAAVAAAAAVDRMLRLLASYGVVRCATEAGP DGKARRSYAAAPVCKWLAAGSSSGEGSMAPLGLLNLDKVFMENWYYLKEAVSEGGTAF DKAYGTSLFQYLGQDGNEPSNTLFNQAMASHSVVITNKLLQFFRGFDAGAGVDVLVDV GGGVGATLRMITARHPHLRGVNYDLPHVIAQAPPVEGVEHIGGSMFDHVPSGSAILLK WILHLWGDEECVKILKNCYKALPAKGKVILVEYVLPASPEATLAAQEAFRLDVMMLNR LAGGKERTQQEFTDLAVDAGFSGDCKPTYIFTNVWALEFTK</aaseq>

Gene Sequence

<dnaseqindica>4919..5218#4459..4523#3811..4136#1..437#atggtgagcccggtggtacaccgtcacgccgccggcggcggcagcggcggcgacgacgacgaccaggcttgcatgtacgcgctggagctcctgggagggtcggtcgtctccatgacactcaaggcggcgatcgagctcggcctcgtcgacgagctcctcgccgccgccggcgccgccgtgaccgcggaggagctagctgcgcggctccggctccctgctgcggtcgccgccgcggcggcggtggaccgcatgctgcggctcctcgcctcgtacggcgtcgtcaggtgcgcgacggaggccgggcccgacggcaaggcccgccggagctacgccgcggcgccggtgtgcaaatggctcgccgccgggagcagcagcggcgaagggtccatggctccgcttgggctgctcaacctcgacaaggtgttcatggagaactggtacgtacgtaaatatatatgtattattaattcctcacattcaatcagccagttattttacgcttgtttagtttgccacaagaaaaaaaaattagatgtcatatcggatgtttgatcagatgtcggaaggggtttttggacataaatgaaaaactaattttataactcgcctagaaaccgtatcttttgagcctaattaatccgtcattagcacatataggttactgtaacacttatgctaatcatggactaaataggcttaaaagatttgtctcgtgattttcctcctaactgtacaattagttttttttaaatatatatttaatgctccatgcatatattaaagatttgatgtgatgtttttgggaaaaaattttagggaattaaaccaggccttatattgatactgcgtgaatcagccgatgcatgcacttatctggcttaatttcccttaatttggtcaaataacaaatatcgttttaattagatgatgattaccatataaacctatcaataggagaagtctccaatagcaagcttaaatgatttatcacctaaactatatttacatgatcttcacagcgttgtgtttggtgcaattaaatatttacgataaatctcatatgaaagaaatatatgtatgtatgtttcaaaaagtattccctccgtatataaaggctacacatattacttttatcaccaagatcaagaagaaattaaatcatcttgtatgttacaaaatcatgaaatgaatgcaaccatgcaatcaatgagtaattagatgactccttaagttctaatcaaacatttaatttatctcttcatttaagtcttgaatgcataaagactacaaataggaacaactaatttggaaaaactcaaatgtgaaatcactactacagatccgggctacaataacgggtcatctgtgactggccgaaaaaatatcatcttcaatatatggctactagagtggacccgtcacagatgtgaggtaatctgtgacggcttgcacttgtaacccaagtcacaaccatggctcatcacagagtcacagatgacatgtcatctgtgacaggtatagtattatgaaccatcataaaagagaccactcatctctgatgggtctttaactaacacacgtcacagataacgttatctctgacgggtggtagttatgacccgtcagggatgagtgaaaattcaattttttaaattttgcaaaaaacctcggattgagacatgtcctacgtaaaagttttagctctcgatgatatccacaactttataactaacaacatttccattagagatcgtttacatccccgaatatgcattacaagtgatgagatctacttttaaaaacaaaatttggagtttttttcaaatgacatggctggaaacatgcctcatatcaaagtcatagaactcaatcagacctacaacattataattgaaaatattttcatttgacaaagtttacatggttcaaaatacctgttataaagtgagatctattttgaaaaacgaaattttgaattcttcaaacaacattggatgaagatattttctatgtaaaagttttaaaacacgatgagatctataactatttagttgataatattttcatttgaagtcatttaggtgttaaatatatgttgaatgattcagacaagcatagacaaaataataacattgggtgagtagtcgacgtgtgctgactgctgagtacgtgagttggtaagggtgctctctacgggggttgaggtcttgagttcgaatctcacgtttagcatgcaagtctatattgtgcgaaaaattgtgaatttataggtagtgatgtgtaaccatgtatatgatggctagtcaaattcaaaatatttttttgaggttttttttgttacgtttaaaattcaaaaattgtatttcttgctttgtcatcagtgacgggtcgtaagttacaacccgccagagattagtcatcagtgacggccaggtagttacgacacgtcactgatgactcatctcatcagtgacgggtgacaagttttaacccgtcagagatgacttacataccagtcagggatgagttatctgtttcacccgtcacaggtgagattttgtcatcactgatcaaggccaaacccgtcaaaggtgagggtttgggcccgttagagatgacctgatccggcgtagtgaataggcatagcttttgtggatggagggagtataaaatttgatgttccatgcttgtacgagaacaaaatctattaaatggtactttacagtgttctatattttctttcaattagggcagtcccaacccatagtgtccaaaagcagtgtctttggtgccatatcaataagacatcacagtagaaactacactccacaacccatggttccttaaagtgggccattaataaatacatcatctctcttctctaccaatcatatttattcttcatctattatgaagacactattctctcctaatgcaaaacttgatagtgtctagtgcataggttttcgtgttgaagctgtgtcttgcatgagacccagtttcttcctctcttcactctctctcttaattaatatagtgccacataagctaaaagtcctacgtagcaatgtagttaatgccatagacaccatcgtaggtggagggttgggactgcccttaagtatttgcatggctaaactttttctttcccaacttgacgttccgctcacagttgagtaaaaaattttgtatgtcttaattgcggctactaatcgcgatcgccgggtccctttcttcatcctaaaataaaccaagttataaaattttaaatgcccatgtacgataaaccaactactgccttattaattaagagtattttaatattttgtcgtcatccttaagttcttttttatttggaagtatttttcttgaaaaaaaacatgcagaattttctaagtagaccctttgagttttcttacaaacgtagtactaccactatggccctgtttagtttctaaaacaaaaatattcaccctgtcacatcaaatgtttggacacatgtatgaagtattaaatgtagaaaaaaaactcaattacacagatttcgtgtaaattgcgagacgaatcttttaacccttattgcgctatgatttgataatgtggtgctactgtaaacatttactaatgacggattaattaggcttaataaataaattcgtctcgcagttttcaggcataatctgtaatttgttttgttattagacaatgttttaatacttcaaatgtatgtccgtatatccgatgtgacaaaaaaaaattgccaactaaaccaggcctatgtccttgttagttaatggtttggacttgcaggtactacctgaaggaggcagtgtcggagggagggacagcattcgacaaggcgtacggcacgtccttgttccagtacctgggccaggacggcaacgagccctccaacacgctcttcaaccaggccatggccagccactccgtcgtcatcaccaacaagctgctccaattcttccgcggcttcgacgccggcgccggcgtggatgtgctcgtcgacgtcggcggcggcgtcggcgccacgctgcggatgatcaccgctcgccacccccacctgcgtggcgtcaactacgaccttccccatgtcatcgcgcaggcgccgccagttgaaggtcgatcgatcatcagcttaattaatattaatactaccttcatcccaaaataaatactatccgtgtttaacgtttaagcgtctgttttatttgaaaaatattagtcacacataaaatattattcatgtattatcatttaatgacaataaaaatattaatcataaaaacttttaaataaagcgaacggtcaaatgttgtatatgaacagtgcaaaaatacacttattttaggatgaagggagtatatcaatcaacttcaattggttttttttttctcacgtacgatggatggatggatcttctctgcgcgtatttatatgcaggtgtggagcatatcggaggcagcatgtttgaccatgttcccagtggaagcgcaatcttgctcaaggtccttaatttttattaatttaaatatctccttttctgttgacttaatttttattaatttaattctctctttttgggttgagttttaattttgtttgcttctttcttcatctcaaaatataaggcacaactaccactgatggaaagactaagaatcatgtatcttttcgtttagattactccaataaatatttgatatcttagggtggagtatttttaaaaaaaaagaaaaagaagatgctagttaattgtatgcacgcatgaatatcttgtattgtgagatatgaaaataaatgatagttacgtcttatattttgaaacggatggatcataaccttaaaaagctgattgttctggattaatcagtaattacttgattgtatgtatcatgtgcagtggattctgcacttgtggggggacgaggagtgcgtgaagatcctgaagaactgctacaaggcgctgccggcgaaggggaaggtgatcttggtggagtatgtgctcccggcgagcccggaggcgacgctggcggcgcaggaagcgttccggctcgacgtcatgatgctgaaccgcctcgccggcggcaaggagaggacgcagcaggagttcaccgacctcgccgtcgacgccggcttctccggcgactgcaagcctacctacatcttcaccaacgtctgggctctcgagttcacaaagtaa</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0240900, RefSeq:Os12g0240900