Os12g0279000

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Revision as of 10:27, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0279000| Description = Similar to ATP-dependent RNA helicase DOB1 (mRNA transport regulator MTR4)| Version = NM_001189974.1 GI:297729078 Gen...")
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Gene Name

Os12g0279000

Description

Similar to ATP-dependent RNA helicase DOB1 (mRNA transport regulator MTR4)

Version

NM_001189974.1 GI:297729078 GeneID:9268439

Length

7210 bp

Definition

Oryza sativa Japonica Group Os12g0279000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:10458044..10465253

Sequence Coding Region

10458134..10458439,10459096..10459296,10459377..10459595,10459672..10459698

Expression

GEO Profiles:Os12g0279000

Genome Context

<gbrowseImage1> name=NC_008405:10458044..10465253 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:10458044..10465253 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaccctcaagcgtaaggccgattccgcggccgccgagctcgcgtcccctcctcccaaggccccgcggggctcggaagcactcgctgaatcgccttccctcgccggcgggggcagcgagcccgtcgcctgcgtgcacgacgtctcctacccggaaggctatgacccgtccgcccccgccacccacctgctcaacggcgtcggcggcgccgagggtgctgggcctgccaagaccttcccgttccagctcgaccccttccaggccgaggccatccgatgcctcgacaacggagaatccgtcatggtctcagctcacacatcagctggaaagacagtggttgcattgtatgcaatagcaatgtctttgcgtaatcagcaacgtgtcatctatacatctccaatcaaggctttgagtaaccaaaagtacagggaattcaaagaagagttctctgatgtcggcctcatgactggggatgttactattgagccaaatgcatcttgtttggtcatgaccacggaaatttggcgtagcatgcagtataaaggatcagaagtcatgagggaagtcgcttggattatatttgatgaagtacactacatgcgtgatagagagagaggagtggtgtgggaggaaagtatagtgatggctcctaagaactcacgttttgtgttcctctcagctaccgtgcctaatgccaaggagtttgctgactgggtggctaagagagtgctttatttctcaggtacataa</cdnaseq>

Protein Sequence

<aaseq>MATLKRKADSAAAELASPPPKAPRGSEALAESPSLAGGGSEPVA CVHDVSYPEGYDPSAPATHLLNGVGGAEGAGPAKTFPFQLDPFQAEAIRCLDNGESVM VSAHTSAGKTVVALYAIAMSLRNQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDV TIEPNASCLVMTTEIWRSMQYKGSEVMREVAWIIFDEVHYMRDRERGVVWEESIVMAP KNSRFVFLSATVPNAKEFADWVAKRVLYFSGT</aaseq>

Gene Sequence

<dnaseqindica>91..396#1053..1253#1334..1552#1629..1655#gctaacctctcccttcgcgcgcaactccttaaaccctagccgccgccgccgccgccgtcgtcgccgtcgccgtcgccgccgccgcgcgccatggcgaccctcaagcgtaaggccgattccgcggccgccgagctcgcgtcccctcctcccaaggccccgcggggctcggaagcactcgctgaatcgccttccctcgccggcgggggcagcgagcccgtcgcctgcgtgcacgacgtctcctacccggaaggctatgacccgtccgcccccgccacccacctgctcaacggcgtcggcggcgccgagggtgctgggcctgccaagaccttcccgttccagctcgaccccttccaggccgaggccatccgatgcctcgacaacggagaatccgtcatggtacattaacctgcaagctaatttaatcccctccaccttcgatttattctggcattctaccttcgatttccattggctcctctcgtgttttccttttggtttgtttcgcctaaagtagacaagatgatgatgctcaatttttggcagctacaccgcttagccctatatttcatccctcacattctatcatgtatgatgatgagttgttctgtttagcctcaaatgaatcaattttgatttttacgttaagcctttggggagttcattcgtcgcacaatgtgcatatgcaaccaaaaggccactccataagtttgtcgagtttggctcagcttgttaagtttaggtcctctttggtagtttggtttgaggaatcaaaccatctaggatcagtgatccatcatgggataatcccacaaaatttgaggaatgactgcattcttcatccaatagcttagcatgtggaggtggtgctggacaaacctgttccattcctcaatccaaactaactcatcatgtatcaaatgatgagttcatcatcccgctcgtgaaaccaaacaggccatttattcatctgtctggcatgccacttaagttattttatggtttttcaatcagcattgacccctttatacttttgttttcatgggagtttccaggtctcagctcacacatcagctggaaagacagtggttgcattgtatgcaatagcaatgtctttgcgtaatcagcaacgtgtcatctatacatctccaatcaaggctttgagtaaccaaaagtacagggaattcaaagaagagttctctgatgtcggcctcatgactggggatgttactattgagccaaatgcatcttgtttggtatggtatccttatgattctttgaaatcatcccatctatgttaaatgttttgttacttaatcttgatctgaaaatgcaggtcatgaccacggaaatttggcgtagcatgcagtataaaggatcagaagtcatgagggaagtcgcttggattatatttgatgaagtacactacatgcgtgatagagagagaggagtggtgtgggaggaaagtatagtgatggctcctaagaactcacgttttgtgttcctctcagctaccgtgcctaatgccaaggagtttgctgactgggtggctaaggtttgttgccacgcttccctagaacacatttgatcaagcatttatcagcatttgatctatcttctttgaccataagagagtgctttatttctcaggtacataagcaaccttgtcatatagtatacactgactaccggcctacacctctccaacactatgtatttccttctggaggtgatggtttatatctggtagttgatgagaagagcaagttcagagaggatagttttcagaaaggtttgaatgcgcttgtccctgctagtgagaatgacaaaaagagggaaaatgggaagtggcagaaaggtctcttgacaggaaaacctagtgaggacagcgacatattcaagatggtgaagatgataattcagcgtcaatatgacccagtgatacttttcagctttagcaaaagggagtgtgaatttcttgctatgcaggtatgttcttctgtaaattactgtgatttagataacagaagattttattgatttggcaaacgggccgatttagtttttttttttactgcccttcttgtatgctatagatggctaagatggacttgaatgatgatgatgagaaggcaaacattgaaacaattttttggagtgctatggatttgctttcagatgatgataagaagcttccccaggtaagttgttttatatggctaagttgattcagataggttttcaaaaagacaggacgtttgaactcaagctactagcacacaggatatgtattgcctgtagctattatgcacttcatttgtatatgtacagtcttgtggaaactatttttcaaacaatcaaatgatacatcagtcatctttcatttatacccatacaataggttttctgggcctcttctttttcttaacaaagtttcctgtttcttcaaagtttgaactttaaagcacatatgtgttggtggaagactgctatcgacatagtaattaataaggttgtaccagtaccacgtcacaagatactctgataccgtgctataccagcatcaacagactaattacctactagtacagggaccattaattggtccataccttcaaccggtgcttgtattttatctttcatttagttcctttgataactgagcgattgggataattgagccatggggttttcacaggtttcaaacatgcttcccttgttgaaacgtggcattggtgtacatcattctggtcttttgcccattttgaaggaagtgattgagatactcttccaagagggccttatcaaggttagcatattatattattttatgtttcctatgacttcttcagttgctgttatttcctagccttatggctaaaagtgtatcaacagttcaattagcatactgactgactgctcatctatggaacaatgatagttagaagcaaatgttttgattcatattttacacttttactcaagatgattctggatgaccttaaagggtgcttgattgctcacctaagaacatatattctgatagctgtgactatttgcagtttcatagattaggcacttctatttgcctttgcaaacagtgaagtgcatctgttatatttaggatgtttgagttttctgcactcaattgcactgtagggtttgaatagaaagagagatctaaattttgtgaagtacttattttttttatattatgatgaaattataatttcaactgcttgttttatttgaaatgaaaatggtatctattttctgcttttgtgatccatgccattcattgtacttaccttggtgataaaatgctaacataatattaattttattatatggagcttagcacacttgtatgccttatctatttaagatatacctttttgttgtaacttttagcttctgagattgaaaccttgtgttgtagtgcttgtttgccacagaaacattcagtattggtttgaacatgcctgcaaagactgttgtgtttaccaatgtgcgaaaatttgacggtgatcgattcagatggttgtcaagtggagaatacatccagatgagtggccgtgctggtcgccgaggtattgatcagcgtggtatctgtatattgatggtagatgagaaaatggaaccttcaactgccaaaatgattctgaaaggaagtgctgatagtttgaacaggtaagtgtcctggattcactgcttatacttagcattttagcctggatgaatggtgttaatgagaaaacctgggcattggactgaaactatctgatctattactaaattaacaatggttatgctttaccaatccttttaattaagtagcctgtttctgtgcatgctattcaggtccttatatcaagaaaccttgagctatcatactattgcttaagttagtttaggcatatctttttgttgaactgttatgtttcttatagttttgagcgttcaattttttttcctgttttgcatggttctcaacttctcatgtgattatcctcctcttgatcagtgcctttcatttgagctacaatatgttgttaaatcaaatacgctgtgaagatggtgatcctgaaaagcttcttcggcactcattttaccaatttcaagctgatcgagttctccctgatcttgaggtttgttgacattgtcaatttatatttatgcttagtttttgggcttgaggattccatgagcaaattactaaacgatctacatgtttagtattcagtaaagtgagcagttctaattaataattacataccaaaattgattttccctcaggaaaaaaaatgccagtaaaccaactagtgcgcccagtaccaggtgccctagtatcacaattaatagcaattacactagcataaaaaccctgttattgaagcactatatttgcacttacgtattactctatttgaattttgtgcagaagcaagtcaaggagctggaactagagagaaattccatgattattgaggaggaggagaacctaaagagttattatgatctcttgcagcagtacaaaaatctaaagaaggatgtccgcgatattgttcattctcctaaatatgttctacctttcttgcaaccaggaaggcttgctcgcgttcagtacagtactgatgagcaatccaccttctctattgatgaaaacatcacttggggagttacaataaactttgaaaaggtgaaaacccatagtgaaggtacagaaaacttaaatggaaaatctgatcgagccatactgttatgtaatctttttctcttttgttgaagttgtttcccccgagttgtttggcaatgcaattccattatataacctacaagtcttgtaattagacattttaaggtggttttggaactgagtttaggctccagcacaagatatgcttgctgactaatcgctgcttcaaagttcaaatttgtatgaccacatttattttttctatgatcttgcacttaatctaaatgagctttgattaattgtggtagattgatatttgatagtctgtcctggatttttttgtcgtcataaaaattaggaccctttttttcggcaaattgcatttcatgagtctcattatgtataactccagcactgcctggttgtctggttgagaacacatgacaggggcatcttatagctattgtgtctctctttactcctgagttctgatttatttttttattaaaaaattcagataggaggcctgaggattccgattacacagttgatgttctcacaagatgttctgtaagcaaggacaaaagtggaaagaagacaatgaagattattcctctgaaagaccgtggagaaccagttgtgatttccttgccactttctcaggttatttccttttcctatttgaccggtgaactttttatgttctaaacatttataacaatgcaaagtggtctgttttctgtctaattcacagattgatggactaagcagcattcggatgcacataccaaaggatcttttgcctgtagaagctcgagaaaacacattgaggaaagttgatgaagttatttccaggtttgctaaagatgggatccctttattggatccagaagaggatatgaaagtaagaaaaaaaatcatgcatatcactcaggttatctctatatatgtagttctaacagcttgtttgtttttcttttcaggtacaatcaagctctttccggaaagcttccagaagaatagaagctcttgaaagtttatttgagaagcacgatgtccacaattctccacatattaaacaaaagctaaaagtgttgcatgctaagcaagaattatcaaccaaaataaaggccattaaaagaacaatgcggtcttccactgctttagccttcaaggatgagctcaaggcccgaaaacgggttcttcgtagactggggtaatgctttgatgcatcctttgacacgtatattctgataatatgctgatttggaattcagaatgagtgtctacatgtctaatgattgccatgcataagatagatcatgtttgttgtataaattttgcttgctgaaaaacaactttacaagggcaccagataaaaactgacaaacacatagcataattacataaccagtggattattctatcaaattagaaacaacatacaccatctatcccaattggcatgccctatgttagttgcatgtcaaattgtatccattcttttgtaaataaatataaattcttatcagaggatcaactttgtgacagatatattacaagtgaggatgttgtggaagtgaagggcaaagtagcatgcgagataagttctgctgatgagctaacattgacagagcttatgtttagcggcactctgaaggatgctacagtagaacagatggtagcgctgctttcttgctttgtttggcaggaaaagcttcaggatgccccaaagccaagggaggagctcgacttgctgttcttccagttgcaggagacagctagaagggttgctaaccttcagcttgactgcaaggtaattgatataactaagccatcatatggattgtttgttgatataattgttataaagctaggtggacttgctccagaattgtatcttaatgctgaaacaaaatgttctcgtcttgccgatgacagatccaaattgacgtggagagttttgtgaactctttccggcctgatataatggaagcggtgtattcatgggccaaaggatccaaattctatcaaatcatggagatgacccaagtatttgagggcagcttgatcagggccatcagaaggcttgaggaggtcctgcaacagctaattctggcatcgaaatccatcggtgaaacccaattggaagcaaaacttgaggaggctgtcagtaagatcaagagggatatagtgtttgcagcatctttatacctgtaaaatagcttgatggtctcctgagcatgtgaaggctatcaaagtcactctttctgttgagctgcctgattactgttgaaggggagcaggtccttggcagagaaattttgttgttactaccccagtaggcgctaactaaattaattggaattttctaaaggaatccagatatgtacccattttttcatgtgtacaaattacagatgtattggaaccttgtttatcatttgaaaatctaggtttgaggtaaacggtgtaatttgacgctatgtttctccttcaatctatcatgggttggta</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0279000, RefSeq:Os12g0279000