Os12g0420000

From RiceWiki
Revision as of 10:28, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0420000| Description = Conserved hypothetical protein| Version = NM_001189993.1 GI:297729116 GeneID:9271010| Length = 3875 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os12g0420000

Description

Conserved hypothetical protein

Version

NM_001189993.1 GI:297729116 GeneID:9271010

Length

3875 bp

Definition

Oryza sativa Japonica Group Os12g0420000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:13240845..13244719

Sequence Coding Region

13240845..13240886,13243346..13243414,13243700..13243759,13243839..13243910,13244055..13244126
,13244205..13244297,13244394..13244446,13244548..13244719

Expression

GEO Profiles:Os12g0420000

Genome Context

<gbrowseImage1> name=NC_008405:13240845..13244719 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:13240845..13244719 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccagaagggagcacgcccatcgtgctgaccacccagcggcgcctccccagccatgctcacacccgtcgtggcggcggcggcggcggcgccggcgcggtcccggtggccaagctggaggacgccgccacgctcatcgactccgtcgagacgttcatatttgactgcgacgggcgagaagctgatcgacggagtgctagagacgctcgacatgctagatcaaagggcaagaggctggtattcgtgacgaacaactcgaccaagtcgaggaagcagtacgggaagaagtttgagacgctaggactaaacgtcaatgaggaagagatcttcgcttcgtcgttcgcatatgtggcgtacctgcagtccatcgatttccccaaagacaagaaggtttatgtgattggagaggacgggattctgaaggagctggagctggctggatttcagtatcttggcgggccatctgatggagacaagaagatagaactgaagcctggattttacatggagcatgacaaagatatcaacttattgtccaaaagtatgaatctgcaccagctggacagcagtgacattgtcctctcactacagaacaggcagctaaacaggaagactgccgaatgtaatgactaa</cdnaseq>

Protein Sequence

<aaseq>MPEGSTPIVLTTQRRLPSHAHTRRGGGGGGAGAVPVAKLEDAAT LIDSVETFIFDCDGREADRRSARDARHARSKGKRLVFVTNNSTKSRKQYGKKFETLGL NVNEEEIFASSFAYVAYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGGPSDGDKK IELKPGFYMEHDKDINLLSKSMNLHQLDSSDIVLSLQNRQLNRKTAECND</aaseq>

Gene Sequence

<dnaseqindica>3834..3875#1306..1374#961..1020#810..881#594..665#423..515#274..326#1..172#atgccagaagggagcacgcccatcgtgctgaccacccagcggcgcctccccagccatgctcacacccgtcgtggcggcggcggcggcggcgccggcgcggtcccggtggccaagctggaggacgccgccacgctcatcgactccgtcgagacgttcatatttgactgcgacggtgagatggcacgctggtcgctcgatggttgattggttgtgattttgttatgaattgtcgcgttctttttgttgcgtagcagcgtaggtgtgatttggaagggcgagaagctgatcgacggagtgctagagacgctcgacatgctagatcaaaggtccgtcgcaaactgcaatggtcttctcgaactccgattccaacttagcattatcaatctgttggagttgaagctgatggggttgtggtgttgcagggcaagaggctggtattcgtgacgaacaactcgaccaagtcgaggaagcagtacgggaagaagtttgagacgctaggactaaacgtcaatgaggtaggattcatgccatgaactaccaaattttctttgtgcaaccaatctggtctgatgagcctggaacgctctatgcaggaagagatcttcgcttcgtcgttcgcatatgtggcgtacctgcagtccatcgatttccccaaagacaagaaggtaggagtatctaatttatatcaccatcttcagaagttaacatgttttggtacgaagatacgtgcacaacgttaccatttatactgttcatgttcagcgattttggcaaataatgtgtgcatgtttaacattttaattgttcaggtttatgtgattggagaggacgggattctgaaggagctggagctggctggatttcagtatcttggcgggccagtaagtaataaaatttctgaacccatgttcagtgctgcattcctgggacagactaacacacataacaatcatcttgcagtctgatggagacaagaagatagaactgaagcctggattttacatggagcatgacaaagatgtaactacgatccctactagcactcgccacctatttcatatgtatagaatggtagttggtgattccgtatctacagcttcttctgtatgttgcgctactcctgttgatcttcaatccgcaaaaagaaggccgatgtgtaccattttcctttatacattgattttggacatggccaagtcaggagtggagtttgaggctgcccttttttattctgatggttgaaatcgttgtcttcttgcctcgacaactactgatccattttagagcttctgctgcttgccctagatcaacttattgtccaaaagtatgaatctgcaccagctggacagcagtgacattgtcctctcactacaggtaagccgatattatcttttatatttctcatccattcattcttgttatcacttgctagccattgtcctctcactccagcttaatctttctctcttttcccctaaacagaaagccaggggtttgtttggaagatttagtatactccgtaagctgaggtgctcaaagataccttctacctggatggttcctcgaggaagtttggcctccccttatatgctaccactatctctctaccttcctatttcatttgttcgtcactaaagaatattataacgttgctttcagaagattcaaggatttgctctatcttccatttctttcagctcaatatcattccttttcatcgtaatgatataataacatcaagtgatttgatcaagcataagaaagactgcaactgataaccatttgcaacagcgcactgttatatatttgatatttggcatgttcagaacttcttttaatcgatttctattttctcagaattttcttaccatcattcactgagcatggttattgttcttgatgaataccttatgagaaagaacatgtattatgctatgtggattggccctttaccttactgattttatgcatcaaagattgcatatttttttgggttcatcgaagagatataagctctaccaggatattttcatctgttcagccgatggatattttcatctgttcagctgatgaagtgtgcaatactgcagtatgagttaaatggatgtttcagtggatttgaatactgaatttcacttccttttgctaaaatgtaatttgaatacaataattttttaaaccatataatgctttccttgcctcaatattagaatttgcatgtatttttttttatctattttcatgccattttgcaatgccacgtcctatataggtcgggtttgtgcagcctaatacatcgtggctccattgatcatgttgtttgctaggggaagtctgatcttatgaagatgcttggtacttaatcaagtaagactgctcctaaaaacatatcagcgtgtacgtttaaaaagtgaagataataagcagtttcattcttgctgaactcattgtacattgaaaacatatttggccatgctttcctgagtgcttttgagtttatatagtagtcctatccatattaattaactctgcgagctgtaagaggtgcacatgtcaatttgtaaatgtaatcttgctcttttttcatgagtacatgtttttatcctacaactttgaactttcttcatatgtttgagtttgctctcattattaattttgtttttagcattcttagcgtggataatatttttttagaaacaagaagtcccgcagctatgcgtggggtatcatctagttatgagcaaatgacacaggccaatactgcacctaactttgcatccctcctcaattcaaacatgtgatagaaaattatagctacacttacctttgaaaacttcaattaacgaaatgtactcacctggagtgctatcatggtcccaattgtgatgacttcctcccacggttgtgttatgtgatgtgaccagggattaattaatttctcaacgaaatttcgctctcgagccatcgctatatattataatcctggctgaaaatttcgagttcaatacaatataatttctctaaattttattaaattttgttcaaactgcttcaagttcaaataaaatctgattaaaaaaatcaacttctctcaacaagattttgcccgacctcgcgagatttccctgtagtttattaattcttcacgggatattgatccctggaaggctggaagtgactgctggactattgcgtcgctattgtggtctttcttcgttcgtgaccttagttttgatctactgtaagttgacctattcagatgtagtgtattactacctgacagtgaagcgtttgaagtgttcaattgtcacgtggggaaggaaaaaactgaaaaaactagttttcttttgtagctcatcaatccaagtacttcatatccgtcctataaaaaccaaacataaaacaagatatgacacatcacagtactacgaataatctatcatattccttcctatatttattttttatgaaaccgaggaaatacatatgagaatttgagcttcgacaaaataccggaaaatgggcattgtacattgtctcgactttttaagtttgatcacctttctgcttctgcagatcagtcaataaataagtacttttaaagctggcgcacactgccagccgcttgggccaagtggcagtattaatctttgagataaatttaggaattatatgagagaaaaaaatcctaagaaaagaaagttttgagcaacacatctagcatatgctagaagcttcccaactgacacagtagcgagtacaagtatatgctactttgaaaggaaatttcacttccttcccaactgcgtcgtgtgtttgtggtactgccacagaacaggcagctaaacaggaagactgccgaatgtaatgactaa</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0420000, RefSeq:Os12g0420000