Os12g0443700

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Revision as of 10:29, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0443700| Description = Similar to Glu-prolyl-tRNA aminoacyl synthetase (Fragment)| Version = NM_001073239.1 GI:115488439 GeneID:4352148| Le...")
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Gene Name

Os12g0443700

Description

Similar to Glu-prolyl-tRNA aminoacyl synthetase (Fragment)

Version

NM_001073239.1 GI:115488439 GeneID:4352148

Length

7485 bp

Definition

Oryza sativa Japonica Group Os12g0443700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:15045267..15052751

Sequence Coding Region

15045449..15045513,15045658..15045751,15046247..15046465,15047532..15047816,15048098..15048250
,15048367..15048489,15049178..15049244,15049871..15050058,15050883..15050999
,15051469..15051561,15052126..15052208,15052314..15052359

Expression

GEO Profiles:Os12g0443700

Genome Context

<gbrowseImage1> name=NC_008405:15045267..15052751 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:15045267..15052751 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtccgggaagggaggtggaggcggcggcaagggaggcggagggaagaagaaggaggtgaagaaggagacgaagctcgggatggcgtacaagaaggatgacaacttcggggagtggtactccgaggttgtcgttaacagtgaaatgatcgagtactatgacatatccggttgttatatcttgaggccatgggcgatggagatctgggaattgcttaaagaattctttgatgcagaaataaaaaagctgaagctgaaaccttattatttcccattgtttgtcactgagaatgtcctacagaaggagaaagaccacattgagggctttgcaccagaggtagcatgggtcactaaatcaggaaaatctgatctggaagctcctatcgcaatccgtcctacaagtgagactgtcatgtatccatacttctccaaatggataagaagtcatcgggacttacctttgaggtgtaaccagtggtgtaacgtcgtgcgatgggagtttagcaatccaactccattcataaggagccgtgagttcctttggcaagaagggcatacagcttttgcaactaaagaggaggctgacgaagaggttctccaaattttggaactctaccgaaggatttatgaagaatttttagcagttccagtttctaaagggaggaaaagtgagatggaaaaatttgctggtggactgtatacaacaagtgttgaggccttcattccaaacacaggacgtggtgtacaaggggcaacatcacattgtcttggtcaaaactttgcaaagatgtttgatatcacttttgagaatgataagggctcaagatccatggtgtggcagaactcttgggcatacaccacccgctcgattggggtgatggtgatgacacacggagatgacaaaggtttagtgcttccaccaagggtggcacctctgcaggtcattgttattcctgttccatacaaagatgttgacacaacagctattgtaaacgaatgcaaaaagactgttgagacactggagaaagctggtattcgagcagacttggatacccgcgaaaactattctccaggatggaagtattcccactgggagatgaaaggcgttcctctaagaattgagataggtccaaaagatatggcaaacaatcaggcccgtgttgttaggcgagacaatggtgcaaaagctgatattcctacggctgacttggttgagaaagttaatgggttacttgatgaggttcagaaaaacttgtttgagacggcgaaacaaaagagagatgcctgccttaaggttgttaacacctgggatgaattcatagtggctctgaatgacaaaaaattgatcctggctccatggtgtgatgaagaggaagttgagaaggatgtgaaggctcggacaaaaggtgacctgggagctgccaagacattgtgtacaccatttgaacagccagatctcccagaaggaaccacatgctttgcttctggaaagcctgcgaagaaatggtcattctggggccgcagctattga</cdnaseq>

Protein Sequence

<aaseq>MSSGKGGGGGGKGGGGKKKEVKKETKLGMAYKKDDNFGEWYSEV VVNSEMIEYYDISGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQK EKDHIEGFAPEVAWVTKSGKSDLEAPIAIRPTSETVMYPYFSKWIRSHRDLPLRCNQW CNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADEEVLQILELYRRIYEEFLAVPV SKGRKSEMEKFAGGLYTTSVEAFIPNTGRGVQGATSHCLGQNFAKMFDITFENDKGSR SMVWQNSWAYTTRSIGVMVMTHGDDKGLVLPPRVAPLQVIVIPVPYKDVDTTAIVNEC KKTVETLEKAGIRADLDTRENYSPGWKYSHWEMKGVPLRIEIGPKDMANNQARVVRRD NGAKADIPTADLVEKVNGLLDEVQKNLFETAKQKRDACLKVVNTWDEFIVALNDKKLI LAPWCDEEEVEKDVKARTKGDLGAAKTLCTPFEQPDLPEGTTCFASGKPAKKWSFWGR SY</aaseq>

Gene Sequence

<dnaseqindica>7239..7303#7001..7094#6287..6505#4936..5220#4502..4654#4263..4385#3508..3574#2694..2881#1753..1869#1191..1283#544..626#393..438#gagcagtacacccacgtctactcccgttaaccccgtgtatagactcactgacacgccgggcccatccccgacctcctccgtccacgtcagcaacgtcacgtggcgcgcccgccacgctgtccccattggctacttgcgccctactccgcctactcccctcatctccttcctcctcctccgccgccgccgccaccactactaaaaccctagctgctcgcctcgcccacgccctcgctcgcctcgcctgatcccgccgcgtcgtagcagcaggcaagcttagctagcgcccggatccacgaaaccgaagctgtttctccatttctccgtgcgtttccggggtttgagatttgacttccgtgttgtctgtctcttcgtccgtgcagggcggagccatgtcgtccgggaagggaggtggaggcggcggcaagggaggcggaggtgcggcgtggttgggttgggttgggttgggttggagatttgggtgggtttttgcgttttgttcttcaactgatgatggggggtttggtggcggttgagttgcagggaagaagaaggaggtgaagaaggagacgaagctcgggatggcgtacaagaaggatgacaacttcggggagtggtactccgaggttggtttttctcgccttttcctttcatgagtttttggcgaggttttgttggtagatttgggtgaattttaatgtaatgtgggtgcgatgaggtgttcatgtgtggaattgaatttaaaggtggtgatgtattcgagatgcgtgtgacaagttctggcagggagtgttggtagctaatcgtttgaacttttattaacagagatttacttctgcatcagtgcaaatgttggtggttctgttagttgctattgctattgctggttttctgaaactgttctgggtcaatttactctattcaaatgctgttgctgaagagagaattagtaatctccaaggatatgatactgttatgttaactatataagttatttcgtagctgttactggagaatggaacacacagattctgtttctaaactgttattggttgatttatccatttattaatcgccatccaaaacaaaacaacaagctcaaacatttttttttcaaattcaaaatatatctcattcttgctagggggcttatagaagtttttttttttttttactttttgttccttcaggttgtcgttaacagtgaaatgatcgagtactatgacatatccggttgttatatcttgaggccatgggcgatggagatctgggaattgcttaaagtaagttttttctcaatgcctgcttaaattcaattaatcaagatgctaatttttatttatttccctttgcaatgaaatgtaagtagtcattgttgcctgttgtactcttgtaacctaagcatcagtgatgataacaaaaagtaatctctgtccacaagttggtctagagtgttgcctgaagtatttatcttgtcaaccttatgcactccttttccctgattgacagttactgcaaacatcacattaacaaatcagcttttcaaatgctaattctgatgcccttttggactaataagtttatctcaacatgtctattttatatcatcagtaacttctgattgagttgtgtaaaagtgtcgttcttagcatcaaggatcttgcctttgtttctttgtttgcagtttattaagtaaaatggcattactataatcatgttctttttccctaagtcctatgcggtttggtgcaggaattctttgatgcagaaataaaaaagctgaagctgaaaccttattatttcccattgtttgtcactgagaatgtcctacagaaggagaaagaccacattgagggctttgcaccagaggtgtgtattttcccatgctatttactccatcattcagtattttacccattaggatgtacgtctgtcatttgagcatgttgacaaaccttcatgaaatgaagctagcaaaaactatttgtaacgattcccttttcagcccgaagtctgaacactcaaaagatttttcttgcttgacctgagcaatatttctcaactcgtttgtgagataacccacaatatttctcaattaatttgtgagatagcacataaattcataggcatgcgaactatctgacctatgaagctatgacactattcattctcttatttgattattgaggcaaactagacctcagggctttgaatgtttgacccataatttctcctgaagaaactccctgtttctcttataaagttcctaaaggttagttctggatagatttcaaattcaagcacccaagccatatgaaatgatgctcttaatcacatgaaccacatggcctgtaaacctgttgtatgaccacctaactatttttgtgctagtcatgcaatttgttggcacaggccactgcctttcatgcaacactttttcctggagtatgatcataatcactgagactgaataattgagttgacatagttgttagaactgtgccgatgtctaaaatgtcaagtaaaaagaggtactatctattggacatgccacgtggtagtgctgatgacaactattatttgttcaatagcatctgttttgtttgttataaactgttgcatacacattttacttttaggctatttgttggaacttgatacagtaacatagtcttttgtaattcatcttgcaggtagcatgggtcactaaatcaggaaaatctgatctggaagctcctatcgcaatccgtcctacaagtgagactgtcatgtatccatacttctccaaatggataagaagtcatcgggacttacctttgaggtgtaaccagtggtgtaacgtcgtgcgatgggagtttagcaatccaactccattcataaggtagtcaattgtttataaacccctccctgccctatttcctctagtgcctggcttgcaagctttgtcctcaatagtgcctgattgcctgcatcctaacaaatccgaaaaactttttgcaaaggaagaatatggattcttttatgtgaaatgagtggcatgatatgctttcaaatattctgtaatcctgggtcaagggttatcattttctcttttcccaagaaaatcatgaaatagctcttttctaattgtgctcgacattacttgaaacaaaagggacaaaggaagataagggaatcttgtttttgcaactttggtgttcatatgaatttttaggttaggtttttcttacatgtcccactctccaacatggttctgcatgatatccatgatatccaatattgtatatattcctatactgctcatgtgttgtcacctgcatgttatgtcattcatcagtttcataacaatgagtcaggatgatctcaattttcttagtgaatgtaaatacgagcattatcatacaccacctgtttccatgatggcgaataggtggttgacctatgcactagggaatagggatatattcatcatctctggctgacacattctgtaactattctccgcaggagccgtgagttcctttggcaagaagggcatacagcttttgcaactaaagaggaggctgacgaagaggtactgtacttgtttttgcaaccgcagttcatcagggttaactgccatattgaagtgggctcgaatgcatggatgaaggggggattcttaggaaaatgagaatactgttccattattctccctgtcagaactaaatgatcactaagaaattagctctccaatcaagatgtgctaaattaaccttaagctacttttccagcactagcatttttgctgctgccttgccatatgagcaatctccataatccatgggcctccctaatgggcaatctgctgccatttgcagctggccataacttgctcagggaatttttggttctaaataagcagcatcttttgtttaacaaatattggtgtttctgttgtaaactatctttaagtactattgtcctgcttttggctagtgtgaagcaacagctggcccaatatcaatgcatagtattctaggaagaagatattatactgctagtgtaaatagtcgttttgacatcagtaatatttcaatttcattacacttcctgaaccttgttttacattttcgaatgtgaaaaggttgtatttatctccagtggttgcttggcacaaaaaactattttgtagaatatctgatggagcgaacagaaataatgagtaacgtgttgttaatttaaaaggatgctgagttattttaatccatgacaatgttcaggttctccaaattttggaactctaccgaaggatttatgaagaatttttagcagttccagtttctaaagggaggaaaagtgagatggaaaaatttgctggtggactgtatacaacaagtgttgaggtattaatatgaaatgtttgcttcattccacccgattagtttttctgtagttaccctgatgaagaagagtacttatctttatatttagtaataataaaattttatcatatttgcaggccttcattccaaacacaggacgtggtgtacaaggggcaacatcacattgtcttggtcaaaactttgcaaagatgtttgatatcacttttgagaatgataagggctcaagatccatggtgtggcagaactcttgggcatacaccacccgctcggtaattctcatatattgttaaattttggaatgtacctggaattttcttcttgttttgcccttttgaagtggtaatgttttacaaaagaaatgaggcttttattgtgaatgaggagctagctttgagtgctaagctctctggtaattttaaaatacagaatgcgctagttttttaaattattatttttactttaattctatgtatctgttatttccagttgctgagttctctacccaaattatgttcacatttgtagtattgaccctatgcttgttttgcagattggggtgatggtgatgacacacggagatgacaaaggtttagtgcttccaccaagggtggcacctctgcaggtcattgttattcctgttccatacaaagatgttgacacaacagctattgtaaacgaatgcaaaaagactgttgagacactggagaaagctggtattcgagcagacttggatacccgcgaaaactattctccaggatggaagtattcccactgggagatgaaaggcgttcctctaagaattgagataggtccaaaagatatggcaaacaatcaggtacagaggtcacaccatttaatttattaacttcattgatcagtggcacattaattactataatgcttctaggactcttcataaagtagttaatgataaattaataatgccttccatatccatgatagaatccacaagtttattagtagatcagtgtacttgtataaattggtttttcttgttagcataagatgaagtgtaaatggcttctttgttctctattccctatggaaaatatgattaattaatggcatcaaaacagtaagtagctaatgaatatataaactaagggcacctttgttatcatgcattttcctgaaaactgctatatctttactgttagagaaaaagagctagtggtggtggtggtgatggtaagtctgccataccaccaccatcaccatgggttctgtgcatacatgcacgtgtgtttcttttatctgaataattatatcatttgcacatgtggttcgtaataataggatcatttgtgaactgatgatcaatccgaagtctatatattgttcttgagttcagattttatatttatcctagatcgttgcaatgcatgagttggctagttcatttaataacctatttctcctctttctacttaaaatatgttaatttgattcaattaagcaactttcacatcttttccagtgactgaatggtgccctcaaccatttctcatataggtttggcatggatggagtaactttcattttgttgtgctgtttaatttgctactattccctgaacctttattccaactaatactccctccattccaaaatataaagcacagctacccttagcccaaagaccaagaaataattattatcaccttatagtttggattaatctaataaatgtaattcatgcacccaataaaattagagatcttgatggtggagaatttaaataataatattttagtagagaagatgggttagttaatggcatgcatgcatgcatgccttatattatggaacaactttaaaaagtagttgtgccttatattatgaaatggagggagttaatgaaaacatcatctgcttttcaggcccgtgttgttaggcgagacaatggtgcaaaagctgatattcctacggctgacttggttgagaaagttaatgggttacttgatgaggttcagaaaaacttgtttgagacggcgaaacaaaagagagatgcctgccttaaggttgttaacacctgggatgaattcatagtggctctgaatgacaaaaaattgatcctggctccatggtgtgatgaagaggtacgtgagacctttttatgagatctccctctcaccatgttatttttttagcactagttaactatttggaatatccagtgtgttcatgttctcttctacaaagttttcttttgattgctggggcaaggcgtatttgtatatctttattatatctgttgattgtggagggagaatgggaaggtaggggtaacaccagtgaccaatagaagtttaaagcaccgtcgagcttagttcaaagatgggagttaagtagaatggagaacgaaatgggatagcaaggagactcaatgaggtttgcaatgtcttggtcgagggtcacattcaatagtacctgcaaaataatttattgcactgtgatatctggagttctgttagttactaccaaatatactcctgtgttgcactagttattaacataacattatgaactatttacactggattactaacattttctactcaacatgggcatcttccattttcgtgctggttcaggaagttgagaaggatgtgaaggctcggacaaaaggtgacctgggagctgccaagacattgtgtacaccatttgaacagccagatctcccagaaggtatgctttgcaggcaatagctaaaatgccacaaatagcctgggttcacaatctcttttgctcggtcttttactgcatttcttgcaacgtattcttccatgcacttgtaactaaccttttctgatgcggtgcaccaaaattcaggaaccacatgctttgcttctggaaagcctgcgaagaaatggtcattctggggccgcagctattgatctgtaacggatctcggttgtgatcattcattcctgctggcgaagccgttgattcaccatagacatgtattgcagttttcatactagcaaagcatgatacacatacatctatttaccgtgcagttttgctgcttgtcagaaatcttgacattggaatgtttaagtaacatcttgtttggttc</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0443700, RefSeq:Os12g0443700