Os12g0481100

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Revision as of 10:30, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0481100| Description = Similar to RNA helicase| Version = NM_001073303.1 GI:115488567 GeneID:4352218| Length = 10132 bp| Definition = Oryz...")
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Gene Name

Os12g0481100

Description

Similar to RNA helicase

Version

NM_001073303.1 GI:115488567 GeneID:4352218

Length

10132 bp

Definition

Oryza sativa Japonica Group Os12g0481100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:17829510..17839641

Sequence Coding Region

17829713..17829731,17829893..17830173,17830689..17830775,17830865..17830960,17832331..17832432
,17832567..17832609,17832681..17832799,17833195..17833291,17834000..17834061
,17834217..17834279,17834694..17834796,17835249..17835344,17835441..17835589
,17836203..17836376,17836925..17837003,17837654..17837760,17837841..17837909
,17838726..17838890,17839053..17839640

Expression

GEO Profiles:Os12g0481100

Genome Context

<gbrowseImage1> name=NC_008405:17829510..17839641 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:17829510..17839641 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>attaaaccctcgcctcccgccgccgcacgccggaggcgaccaccaccaccaccaacccccgccgctcgccgcctcctcctctcccgcggcatggacgccgacttccggttcgacccggacggctccgacgacgacggggcggcggcctcggcggccgcggggcggaggaagccggcgcagtcgccgtgggagttctcgtcctacgcggagtccgtggcggcggagcacgcgcgccgccgcaccacctccatcgacgagaagatctcccaggccctgagcggtagccgccgcggcgggaagccttctatccccgacggtgactccgagggcgacgaggatgattcggaggtggaggatgatagtgaggaggacgacaaggaggtggtggaaggggagatcgacgacgaggaggacgaggttgaggagagcgaggatgatgacgagggggtagaggtgagcgatgaggaggtggaggagttggaggagggcaaaggggaggagaagagtgacgaagtggaagagggcgaggaagggcaagatggggaagaggaggagaaagaggaaggagatgaggaagctgcagaagaggaagaagaaacggacaagaagagtggtgtagtggacccttctaaattttttgcatcttccgaaggagcgtcgttccatgcaaattcatttcttgagctgaacttgtcaaggccacttcttcgagcctgtgaagcactcggctaccaaaaaccaacgccaatccaggctgcatgcataccattagcattaactggacgggatatatgtggcagtgctataacaggatctgggaagacagctgctttctcattacctgtgctggaacgtctacttttccggcccaaacgtgtacctgcaattagggtgcttatccttactccaacaagagagttggctgctcaggtccatagtatgatcgagaaattagctcaatttactgatatcagatgttgtctgattgttggtggactttcaactaaggtacaagaggtagctttaaggtcaatgcctgacattgttgtagctactcctgggcgtataatagatcatctacgcaattcactttccgttgggcttgaagatcttgcaattttgatccttgatgaggctgatcgtttgctagaactcggtttcagtgctgaaattcaggaactgattcgcatgtgtcctagaagaagacagacaatgctattttctgctacgatgacagaagaaattaatgagcttgtgacactttcactgaacaaaccagtccgtcttgaagctgatccttctctgaaacggcctgcaacattgacagaagaggtggttagaatacgaagagcacgcgaagcaaatcaagaagctgttctgcttgctctctgtttgaagactttcaaggataaagtaatcattttcagtggcacaaagcattctgctcacagattgaaaataatatttggtctctccgggatgaaagctgctgaacttcatggcaaccttacgcaggcccagcggcttgaggctttagagcttttcaaaaagcaagaagtggacttcctgattgcaactgatgttgcagctcgtgggattgacatcgttggtgttcgaactgtaataaatttttcctgcccgcgtgatgccagaacttatctacatcgtgttggacgcactgctcgtgcaggcagagaaggatatgctgtgacatttgttactgacgatgataggtccctcttgaaagctattgcaaagaaagctggttcacagctgaaaagtcgcattgttgcagagaagcctgtggctgagtgtgcaaaattgattgaggaacttgaagatcaaatttctaccataattcaagaagaaagggaggaaagaatattaagaaaagctgaaatggaagctacaaaggcagaaaatatgatagctcataaggatgagatatactcaagaccaaagagaacctggtttgctactgagaaggaaaagaaacttttggcaaaggctgctaaagaatccacgagtcaaggtaagagtaattctggagttattagcgctcagcaagctgaagatcttcgtctgaaggagaaaaagagaagggagcgtgagaaaaatctacctaggaagaaacggagacggttagaggcagaacgggagatgttagaagatgagagcgaagatgaggaagaagctaaggaaagcaaaggtgggaaaaaagaaaagaaaggtcaatcgctagtcgatgtggcttatcgtagagcaaaatcaatgaaggccagcggtaaaaggggtgctggcactggcaaaggaaagaatgataaaaaggcaaaacaacattctggaaagggcccaactaggcaagaggagatgcaagagttgttccagaatgatatgagtgaatggaagcagggccgctccttaaagaaaaataatgttatgcgaaagaaatcgaaaaattcttttaagagcaaatccaggtacaaccgccgaaagtag</cdnaseq>

Protein Sequence

<aaseq>IKPSPPAAARRRRPPPPPTPAARRLLLSRGMDADFRFDPDGSDD DGAAASAAAGRRKPAQSPWEFSSYAESVAAEHARRRTTSIDEKISQALSGSRRGGKPS IPDGDSEGDEDDSEVEDDSEEDDKEVVEGEIDDEEDEVEESEDDDEGVEVSDEEVEEL EEGKGEEKSDEVEEGEEGQDGEEEEKEEGDEEAAEEEEETDKKSGVVDPSKFFASSEG ASFHANSFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTA AFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLS TKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQ ELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRR AREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQR LEALELFKKQEVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGRE GYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEER EERILRKAEMEATKAENMIAHKDEIYSRPKRTWFATEKEKKLLAKAAKESTSQGKSNS GVISAQQAEDLRLKEKKRREREKNLPRKKRRRLEAEREMLEDESEDEEEAKESKGGKK EKKGQSLVDVAYRRAKSMKASGKRGAGTGKGKNDKKAKQHSGKGPTRQEEMQELFQND MSEWKQGRSLKKNNVMRKKSKNSFKSKSRYNRRK</aaseq>

Gene Sequence

<dnaseqindica>9911..9929#9469..9749#8867..8953#8682..8777#7210..7311#7033..7075#6843..6961#6351..6447#5581..5642#5363..5425#4846..4948#4298..4393#4053..4201#3266..3439#2639..2717#1882..1988#1733..1801#752..916#2..589#gattaaaccctcgcctcccgccgccgcacgccggaggcgaccaccaccaccaccaacccccgccgctcgccgcctcctcctctcccgcggcatggacgccgacttccggttcgacccggacggctccgacgacgacggggcggcggcctcggcggccgcggggcggaggaagccggcgcagtcgccgtgggagttctcgtcctacgcggagtccgtggcggcggagcacgcgcgccgccgcaccacctccatcgacgagaagatctcccaggccctgagcggtagccgccgcggcgggaagccttctatccccgacggtgactccgagggcgacgaggatgattcggaggtggaggatgatagtgaggaggacgacaaggaggtggtggaaggggagatcgacgacgaggaggacgaggttgaggagagcgaggatgatgacgagggggtagaggtgagcgatgaggaggtggaggagttggaggagggcaaaggggaggagaagagtgacgaagtggaagagggcgaggaagggcaagatggggaagaggaggagaaagaggaaggagatgaggaagctgcagaagaggtgagccttgtggctgcaattccattcctccatttttttccgcttaatttagctccggatgcgctacttgcgcactatgctgtcaaattcaagtgcaatgtggtgtctcatgaactattttcttgcaataatcgtgacatgcttatgcattggtattcgcaggaagaagaaacggacaagaagagtggtgtagtggacccttctaaattttttgcatcttccgaaggagcgtcgttccatgcaaattcatttcttgagctgaacttgtcaaggccacttcttcgagcctgtgaagcactcggctaccaaaaaccaacgccaatccaggtttacaactgcgagcttctctttgctcatgaataagattgtaaacatgaataccttcttcagtccttcatatatgctggacactcaatactttggaaccataaaaaaaatgaatggatgattatgtttattaggatatttctcttctgaatgttgtcgtaacatgtgattcaaatgccttcaaaggacacacactgcttcttaagatgtaccttgggtcttttgagtggctttgttagtttggtttgcaagtcttaatataaagctttcatgtttatcttgaccatgagaatgtatggttcacgtagcgttagcttgacattaatctatgttccatagatatccacatatatctgtaaggactaaggagtggtatcatgaactatggtttctcgtgttgttaaactcttttgttttaagtgaattctgttcctgtatgctcttacttaggtggaaattggattttgtaactataacagggcaaccctaaaagcattcaacagttagattattttcttttaattatagccaagatatttctcttgtcagaatttgtgcttccttgtctgcacaactacttgcattttgatgacgctctcaattagtgcaacaaaatggcaagtcctgattgtagtttgataccacatttttttattataaatgagattcctttaattggccaaaaacagaggtttctgttattattttcggtgaagtaaaattttatttttaaataacataattccttcttgatgcatattggcaggttaatttggttgccaatttcctttattcttattttctttcttattccaggctgcatgcataccattagcattaactggacgggatatatgtggcagtgctataacaggatctgggaaggtatatataattaacaaaaacttccctttgggagcattttgaatcagtatctatctttagcttaattgaactctttatagacagctgctttctcattacctgtgctggaacgtctacttttccggcccaaacgtgtacctgcaattagggtgcttatccttactccaacaagagagttggctgctcagtaagttctatatattcagttcttattgaaaccactttgatattaactcgttccttctattattttgtttcatcatggctgaagctccaataaggaatttcctaagtttgctctgttttattagttttttgtttgaggttattttttttctgcgctgttttatcaactaactagcaatgttctgatgatatgttctaatatgtatttttcttgaagctatactttagggatgcttgctattttttaattgtatttagggtatcagtttatttttatcatttcaattttgtatttaaaattgatatatgattaaaatatctaattcccattttcaaatagtcaaatttgaatgtttgaatatctcttgcttgacatttgtttttataatcactacttttaggcctcctaaaatcgtagcaacaaagtttactgcacctcatttatctaagaagaatatcatatttcgcataaagagatcccaaatgaattggttgtaacattactcatggaaagatcccaaatgaattggttgtaacattacttatggaaaaactatcttaaatgctggcatatatcacatggcgcttctcagttttatattattacagtagttttaagtgtacttaccattcatataactacaaatgcagggtccatagtatgatcgagaaattagctcaatttactgatatcagatgttgtctgattgttggtggactttcaactaaggtattgcattgcattttgttctatttgtttgctgatcttctgcgagggacaacctgtatttttttccttgtgttttactccatagaagtagaaccccatgtttttttattacattttagttatcatcctgcttatggagccaacaaagttttaaggtgttcaaatgttatccatccatgtaccatttcccttgatagaaacttatttgaatctgtgatcggacatagtaaaaggaagagggctgcttcggctcaaactaagagcagcagaagaaatggaaccgtttgtctgttgtagttgcgcttttgtcaccgcgttaaatatggctgcttaaaatcaatgtatttagatatttaactacaattaaacagcgaatggccaagtttcatatttgctagtgctataagtttctattgaatttggaactatagcgtccacttctgtggtaacatgtctgattgtttgcatgcctttttctattatcctttattgtattttctgcctagtttctgggttaaatgctgacagaatgatgcataccttaccaggtacaagaggtagctttaaggtcaatgcctgacattgttgtagctactcctgggcgtataatagatcatctacgcaattcactttccgttgggcttgaagatcttgcaattttgatccttgatgaggctgatcgtttgctagaactcggtttcagtgctgaaattcaggaactggtaacttcgaaaattctctgctttctatgcactttggcagtttgacatttgggtctcaaggaaatgttcttcaagtgggtctgttggaagcagagcagctgaattaatgagatgctttttcatcagcagcatgctgtagattaggcattgttcactgaacatggttacagacttgcagcttttttatgctgatgcagaaaaacattgtatagaaatcaaaagtatcatacatgttatttcattttcttgttcatcttctacatttggacagataatgaaattgcgattagtctttatttaaatactggatagctttctattgtttgggaggtattgctggagattgggaatggaggctgtggaagtttgtagggctgaactgggtgttgggaaaagggtattcaatggtcaatagattcagaattagccatttaaatctttctgggtccttatatctactcaactgtcaaacattcaaagaatgattccgttgtcatctataacttcaactttggacttgtgggtagtttctctagaaataattgattttatccttgttttcataagggactcataattcttttactgtaatggggttccataataaatgcagattcgcatgtgtcctagaagaagacagacaatgctattttctgctacgatgacagaagaaattaatgagcttgtgacactttcactgaacaaaccagtccgtcttgaagctgatccttctctgaaacggcctgcaacattgacagaagagtacaccttttttcctaagtctaaacattgaggttatgtgtgctgtattccatgactaacaacatctccatttcctaattatttgctcatcatcagggtggttagaatacgaagagcacgcgaagcaaatcaagaagctgttctgcttgctctctgtttgaagactttcaaggataaagtaatcattttcaggttagtgttctggaggacctgattgtaatttatggctttattgcttttgtcaatgactcagtgtaacagttcctcagttttgggcattataagatgtatagtttggcttactactctgctcagtgctaacggagagtccgagagtacattcagggtagcacaatctagtgggaagcacatgtgtttcactggattcgatgaatacatgattgactcgctaagcccagcaacagatgtagtgcatgtgcatgtgttccaccattccataggaactattatcatttgtctgcatcacatgttgacatatagttaatgcatgcttgtgtcatactattgctgttactcctagactcctatttactgtcctactgcatgtttgtgtactggatgattctagtacttaatcacatgtatattttgtataatatgttgatattcatgtccctttgcagtggcacaaagcattctgctcacagattgaaaataatatttggtctctccgggatgaaagctgctgaacttcatggcaaccttacgcaggcccagcggcttgaggtgattttatgttacagttcttcctttaccttccttttaccgtctccttagctcacatccatgtttcctaattgtaatttttagtaccatggcagcttttgtgttatgaaccctttatttttcattatcttcattaaaatgtgctcacagaattgcggtaacattgtatattatcagatatcatatagtgtataaactataaaacttatcattatgaaaagtagcctacatgccctttactagtattttcacccccataattttcctcttctactgactgtgcacatgtaacatgtttccaaattgttttgggaatatactagttcttgttttgcattgtacattttgatacttctgctcactgataaatagctctagcatactaacctaatgaaaattttcattcttctataggctttagagcttttcaaaaagcaagaagtggacttcctgattgcaactgatgttgcagctcgtgtgagtaaaattttatatctttcataattttcatatatgcaataataagattatgttgtgataataaaaacagaaaagataatgtaagagaaatataaatacatttttttatatttcatttttttttgttgatgaattgttggtttgacttgtaggggattgacatcgttggtgttcgaactgtaataaatttttcctgcccgcgtgatgccagaacgtaagcactaaataagtggacacagttctgctatgtttgttttttttgcatgccttccgtttagttttgtgaagcttccaatgattatgaaatatttgtacttatgtgttatatggttgatgagagtattgttcattggaacataatttaattgctcctggttcagttcgtatattaattttcatgatatgaatctcttatactgccatgctgcttagctcatcaccagtggtatatctattttaaatttgattcttggaattgttacactttctaataagtaatgataattcatatgtatggcacaagttatatgaatttatcagtgaacgatgtagttttggcaattaatacaagggagttggtcatttttgttgagtattttgtgtgtgtcttgcagaatctgtagtcctagaatgtgccattttactggtctctgtcttttatctgattattcggacatctttctgcaacatttcggaattttgcattgttggtttaggagaaaaaaagttaccttccagatgttgtatgcattttgtgtgttctgtttttgagcctccacatgtaccagcccaatatcatttttctctaataccattagttttcttttgcccctttttgtcttgcagtcataaggaagaattatgccatttaattatgttctttgacttctttcataaatgtttcttgttcatgctgttgcagttatctacatcgtgttggacgcactgctcgtgcaggcagagaaggatatgctgtgacatttgttactgacgatgataggtccctcttgaaagctattgtaagtatattgttatgagcaatggtctgtgaaccaaaataaattcttaaaaaaactccacagaacactaaaagcctaatcagcgtgtttaatgtgaatagttatgtgggttctttcatgacgttgcagttagtaagaataatttctttggtgtgtgggagagtactatgcactcagcatagaggctggtccaccactgataagtgataatgtcatttattaggggcatttgcaaatttgcacataactatctgatcctcaagttcgaaattggtttctatatgcacagatatgttaatgtatgagcattattgtgactatgatgatcaatgttatttttcgtttagccactgcttttgattgttacttattggtattcgttgaattgctttcaggcaaagaaagctggttcacagctgaaaagtcgcattgttgcagagaagcctgtggctgagtgtgcaaaattgattgaggaacttgaagatcaaatttctaccataattcaagaagaaaggtttgtttcaaggaagtttacggtagacttttgttcaaactacaactagtatttataccctttctttgcagggaggaaagaatattaagaaaagctgaaatggaagctacaaaggtagtatttctttacaagtttcgaaatttccttgataacaaatcatgttttgcttgcaatagttattactattaagtgttatttaatgctatatagattaacacctttttctgccaaatctttacaactatcaggcagaaaatatgatagctcataaggatgagatatactcaagaccaaagagaacctggtttgctactgagaaggaaaagaaacttttggcaaaggctgctaaagtaagttcgccttaaattgtatatatatttctttgatgccaaattgccaattacatatgcaaattctagctctcaaattgtgcctgctgcctgctgcatgtcatttcacaatttcctctttacctccttttaccattttactctgacaaacccttttacttcctccgtttcacaatgtaagactttctagcattgcccacattcatatagatgttaatgaatctaggcatatatatgtgtctagattcattaacttttatatgaatatgggcaatgctagaaagtcttacaatatgaaacggagggagtagctttttacattgtcttcattaactaaatagacagcctaatgcccttggttttgttttgttctgtctttcccacaatcattttctggatttccatgcagtggcgaagccaccgtaggggccagggagggccaacacccccctaacccctatgtgacctcccctcccctctcttctcccaaggatgattagcacttataatctagctattaattatatcattagttacagatgagactaactatataggatataggacaactgacttatgaaatgacttagctaactgatttatcattttagaagtgattgcaagactccaattaatggaacaaactgttcaatcatccatatattaaaaatattactgaattttaaattggcgaatcatgatatatgggttcttgttctctcttgtagctaatcgctgtaacatgtatgatatcgagttaccgatcatgcatcaacactacaaaatcactgttcactgaaccttaagtgaattaccatgtctcgtagatggcaccccccatctctaaatcctggcttcgccactgtttccatgtgtgttgattgtgacagtagtacctttcgttgatttgctcacttttttttttggctaatgtgattttagtgatggtttctggtttagttgttcccgatttcatgaataaaaggcagagtctatgttatggttgttttttaggtgataggcctggtttctttatttgtacaggtagatgataacaggataatgtagttacagttcgttaactgtacaccaaatgtatgttaggatagaagaagtgggatgaacaaaaagattgaatgcatttgaatattctgggcttcaaaaccatttggatgttcatttaacttgcctctatggctttggctattactgctattctttagttgcaatttatatggttattcccatctttcatgatgctctaataaaccagaaatcctaagttatgctcgtggatggaatctatccatacttaacatatcttgtcagtcttgtacatgtcgttgatatttgagttattatttatcaaggaatccacgagtcaaggtaagagtaattctggagttattagcgctcagcaagctgaagatcttcgtctgaaggagaaaaagagaagggagcgtgaggtatgcttatgaacatgttatttgaatgagttggtaatgcccatgaggttttctttagttgatgttttattttatcttttactctacagaaaaatctacctaggaagaaacggagacggttagaggcagaacgggagatgttagaagatgagagcgaagatgaggaagaagctaaggtacatttccattgatgttgttgataattattgcatactactctggcgttgataactagtaataataaccatagaaggcattgataactagttattaagtggaaactagtgagacttatttagttgattgaatcctgttattctatatttgggtttaatgctgatggctgcataaacaattttgtgcgacttctcccttgtcacaaatctgcactgtacacatcttgaatgtttggtgtatcgaaattggttctttaggtggttatatgtttttttatctactactccctctgtttcaggttataagactttctagcattgcccacattcatatagatgttaatgaatctagacacacgtatatgtctaagttcattaacatatatatgaatgtggataatgctagaagtcttataatatgaaacgacggaagtatgatcaaaagaatacttgcacaagttagcatccacctgttgagctacatttagccctaagctttgaagtgcttcctgcaggaaagcaaaggtgggaaaaaagaaaagaaaggtcaatcgctagtcgatgtggcttatcgtagagcaaaatcaatgaaggccagcggtaaaaggggtgctggcactggcaaaggaaagaatgataaaaaggcaaaacaacattctggaaagggcccaactaggcaagaggagatgcaagagttgttccagaatgatatgagtgaatggaagcagggccgctccttaaagaaaaataatgttatgcgaaagaaatcgaaaaattcttttaagagcaaatccaggtatgtaacaatgttattgcctgcccttgtatttaatcgaaaaatacaccttagcatattttttatcatacaaaactactgtctaattcattttattaccactgacgctaatactagggtccccaaaatttctaaatgagagttccactttcctttttcaggtacaaccgccgaaagtagaagacccgctaacttgtagtagcgtgttttcctcactgggaatttattgcattcccttgtatcaattttgaccgactgatcctgaagaaatgtcaggatatgttgtgcccatcttgtatttactagttatatacaattttctcatatcgtgcattaatcacattcgtcatgatttttaatgtaatgacctgtgaggtccatct</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0481100, RefSeq:Os12g0481100