Os12g0533700

From RiceWiki
Revision as of 10:32, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0533700| Description = Phenylalanyl-tRNA synthetase, mitochondrial family protein| Version = NM_001073458.1 GI:115488877 GeneID:4352408| Le...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os12g0533700

Description

Phenylalanyl-tRNA synthetase, mitochondrial family protein

Version

NM_001073458.1 GI:115488877 GeneID:4352408

Length

4868 bp

Definition

Oryza sativa Japonica Group Os12g0533700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:21405165..21410032

Sequence Coding Region

21405207..21405405,21405916..21406109,21406298..21406504,21406577..21406694,21406787..21406863
,21406975..21407154,21407774..21407818,21408771..21408875,21409577..21409690
,21409769..21409819

Expression

GEO Profiles:Os12g0533700

Genome Context

<gbrowseImage1> name=NC_008405:21405165..21410032 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:21405165..21410032 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccacgccctccgccgcgcgcttctccccctcctccaaccccgcgcgccctcctcctcctcgcctcccgctcccccgcttccttccgccgaccccgccgcaggcgctgctccgggcgaggcctctccggacctcggctgccgttgccgcggccgcggccgtcgtggaggtgggcggcgtcaagatcgcgcgggaggatgtcgtgaaggaggaggacccaacaaacaacgttccggacacgatctactcaaagattggcctgcagctgcacaggagggataatcaccctctagggattctgaagaacactatttacgactactttgacaagaatttctctgggaactttaacaagttcgatgacctctgccctcttgtttctatcaagcagaattttgatgatgtcctggtccctgctgatcatgtgagtcggagttacaatgacacatactatgttgatgctcaaactgtcttgcggtgtcataccagcgctcatcaagcagagctgctaagggatggacacacacatttccttgtaactggggatgtttatcgtagggattctattgattcaactcactatccttgcttccatcagatggagggcttccgtgtcttcactccagatgaatggtcagattctggcatggatgggacagcatatgcagctgcagacctcaagaaaacactggaaggcttggcaaaacatctctttggtgctgtggaaatgcgatgggttgacacatacttcccattcactaacccgtcctttgaactcgagatatattttcaggatgattggttggaagttctgggatgtggagtcactgagcaggaaattttgaaaaacaacggcaggatagataatgtggcatgggcctttggactaggtttggagcgcttagcaatggtcctgtttgatattccagatattcgactcttttggtcaaatgataagcgattcacatcccagttttcagaaggcaaacttggtgtcaagtttaagccattctcaaagtttccaccttgctacaaggatatgagtttttggatcaatgaagagtttacagagaacaatttatgtgaggttgtcagaggaattgctggagatcttgtagaggaggtaaaactaattgacaatttcaccaacaagaaaggaatgacgagccattgctacaggatagcctataggtcaatggaacgttcacttaccgatgaggagatcaacgacatgcagtggaatgtcagagaagaggtgcaaaataaactgaaagttgagttgagatga</cdnaseq>

Protein Sequence

<aaseq>MATPSAARFSPSSNPARPPPPRLPLPRFLPPTPPQALLRARPLR TSAAVAAAAAVVEVGGVKIAREDVVKEEDPTNNVPDTIYSKIGLQLHRRDNHPLGILK NTIYDYFDKNFSGNFNKFDDLCPLVSIKQNFDDVLVPADHVSRSYNDTYYVDAQTVLR CHTSAHQAELLRDGHTHFLVTGDVYRRDSIDSTHYPCFHQMEGFRVFTPDEWSDSGMD GTAYAAADLKKTLEGLAKHLFGAVEMRWVDTYFPFTNPSFELEIYFQDDWLEVLGCGV TEQEILKNNGRIDNVAWAFGLGLERLAMVLFDIPDIRLFWSNDKRFTSQFSEGKLGVK FKPFSKFPPCYKDMSFWINEEFTENNLCEVVRGIAGDLVEEVKLIDNFTNKKGMTSHC YRIAYRSMERSLTDEEINDMQWNVREEVQNKLKVELR</aaseq>

Gene Sequence

<dnaseqindica>43..241#752..945#1134..1340#1413..1530#1623..1699#1811..1990#2610..2654#3607..3711#4413..4526#4605..4655#cgaagcgcctcctcccgcctcctccgcgctcgcgcccgcgccatggccacgccctccgccgcgcgcttctccccctcctccaaccccgcgcgccctcctcctcctcgcctcccgctcccccgcttccttccgccgaccccgccgcaggcgctgctccgggcgaggcctctccggacctcggctgccgttgccgcggccgcggccgtcgtggaggtgggcggcgtcaagatcgcgcgggagggtgagtcatcgcctggataccggcataaatggcggggatcttgggacagcgaattgtgaatttgtcactcggcggtgtagattttagttgggtagtacgctcgtgctgaacgcatttgctgaagatagtgtggtgggtttgcgtagtcgctgcgtccgtgaagcttggtatctgtagcgtgtgcattgctcaagatcagtgtggttttagtggggggtttactattgtcgtcgcgtccgggaatcaaggcacctgtagctcgtgcgtgcgtgaattgctatccttatgatggtccaaatcccagaatggttttgagtttatgggcaggtagcttcttgatcttggcggtactttagctgcatcgttcaaagcatcacattatatggcctgaattgaatatgtcaaaactgtcgaaactctggtgggaattgagctacgatgtgtgtgaagttaactgctgctgatttttttttctttttttgaagtgactcatttttatggcaattgtagatgtcgtgaaggaggaggacccaacaaacaacgttccggacacgatctactcaaagattggcctgcagctgcacaggagggataatcaccctctagggattctgaagaacactatttacgactactttgacaagaatttctctgggaactttaacaagttcgatgacctctgccctcttgtttctatcaagcaggtatgagttagcagttggcctgatgtgttcaactgcttattccttcccttttgtgctgatttccactgggctagtgaatttcgctttgtgcacttgtttttctttttttcagattctcgcacaccttgtgtaacagtgtactttgaaccatatgattattgctgaccccaaggtcatgcttgctgcagaattttgatgatgtcctggtccctgctgatcatgtgagtcggagttacaatgacacatactatgttgatgctcaaactgtcttgcggtgtcataccagcgctcatcaagcagagctgctaagggatggacacacacatttccttgtaactggggatgtttatcgtagggattctattgattcaactcactatccttgcttccatcaggtaaatgtaacgccatatcacttgaaatatttccaaagaaaggtttgtgttgatgattttttgtacatgcagatggagggcttccgtgtcttcactccagatgaatggtcagattctggcatggatgggacagcatatgcagctgcagacctcaagaaaacactggaaggcttggcaaaacatctctttggtaaactagttatagttagttctgtctttgtcaccaaagaaatttatcaaatatatatgcattggtttaaatataaagaaacatgtgtgcaggtgctgtggaaatgcgatgggttgacacatacttcccattcactaacccgtcctttgaactcgagatatattttcaggtcgctatacaagtggatctacctattctttatggcctgatgccaagtaaagcttgttgcacaacttatgttggcatgattgttgtttgaagaactctctcacctttgcaggatgattggttggaagttctgggatgtggagtcactgagcaggaaattttgaaaaacaacggcaggatagataatgtggcatgggcctttggactaggtttggagcgcttagcaatggtcctgtttgatattccagatattcgactcttttggtcaaatgataagcgattcacatcccaggtattgctactattagttatccatctatttgggtaatctattctgcgctagtttagattcagtaaagaatgcaaaatcatgaatgtatctgcgaaaaattgtttatatcgagttgactactatgaccttccatctgtcttgcaatgatgtgtaaacctgttgctgacattaaggttctgtggccttggaatctttcttagaatgatttggtgaaatatatgttcttttgtcctgatatagttcactagtaataaatgatggtttttgttttaccctatgctcaacactttaaataccttctttagttaattacttaatttatcatatttttaagaaccaacttcttgtataccacttattatgacatattgacatcagtggcatataggggatgggccggtagggtgaacttttcagtgtctgaatcacccctattttttaagtgtctgcagcaatatttgttacaggatctagttagtaattcatagctttgttgacctaacttgggattggcaagtctgtcctgccttcattgcatttactcttataactttatggctaagatgtgagtattgttatacaattttatggctaaaatgtgcatattattatctttcagttttcagaaggcaaacttggtgtcaagtttaagccattctcaaaggtatgtaaccacaactttcctttaccttatgtgtaatttattacctatacataatcttttgtagaatagttctgtttgatatggcaagtggttcttcatctgctttggaaaaggctacatatttaaataactataatactggagataacagctcctattgggctggactcctttgaatatgaaagaaagcatgttcactggaacagattaaaccattttttttctgtgcttgattaaaccaaaaaaatgtcctgaaaaagtgtgccctacattatttggaaaatctagcagagaaatgtagttaataatgaggcattcaaatatgaaatcttgtacattatgatttgcatttgtaacaccccaaccctccatgggctcctggagctctactccaactacacctcaacataaccaacattagaaataaatttcagcatgttttatattgcttatattgaatctttgaggatcgtatccaatatacatgccatgtagaaaaagtaataaccaaaagagaagattagaaagagcacaagttctcttaggaagagagagatagtatctatcacttattgtcagtaattccagcaggttatcaatcttttgcctgttagctgttagctgctggaattagtgattatgtttagaggatgctatctgccacctaagttgtttctctctcttaatcatttcattgctacataatgacctgttcccttcaatggttcaatactagaaatgtatgacctgtaaaatacatctgtaatgttgagttgtaacgcatctagttcctgtggatggctagattggttaacatcagttaccataaatatatgtttacattttatgaagttgcatcaagcatatccaccaataattttttacatgtttatttttgtatataaattgccctctgacttttttcccttttcctttttctgctgttctacagtttccaccttgctacaaggatatgagtttttggatcaatgaagagtttacagagaacaatttatgtgaggttgtcagaggaattgctggagatcttgtagaggaggtatgcgcccagtaaatttggtacatagctatacatttaacttgcgacacttgactttaatttagtcatttcaagtttgtttcattgtatgatccctcacttcttgcctactgtacattgtatttgcaataataagtggtactgtacttcaaacaatagcattaacactaaggtattaaggctcctgatttggtgaagtattcgtttattcggggaataagcgaaatgacatatttgcaaacgaaaaataatttgtgaataaaacttttatatacgtattcttagcgatctaaaagcaaagtctgaaaaataatccttgatgaaaaaaccccaaaatcaacttcaaatttaaggttgaaaattcaaattttggctgataagcataatcataagtgaaaagataaggtcaacttcaaatttatggttaaaaatgcaaattttggctgattaacataagcataagcgaaaagatgaggccgtatatctgctggtcttaacaagctgataattttgtattatttatatttctattgctaatattatgcgcctttagctcattatgatgctcgtcataatattagcatctaactgatgaatctaggtgcctaactttgtgcgtctaacattaccagtatgatgatacactggaatttattgtgctcgtcataattttatcaggctaaagtgttgttcgtttgcaggtaaaactaattgacaatttcaccaacaagaaaggaatgacgagccattgctacaggatagcctataggtcaatggaacgttcacttaccgatgaggagatcaacgacatgcaggttacattcgacgacatctatgattttagatgatattccttggtttttatactgaacatgtctacaatttggttgcagtggaatgtcagagaagaggtgcaaaataaactgaaagttgagttgagatgaaatagagctagttcacgtgttcgaccagacattgattgtttgaccattttcgtctgtacattcattcaaaagtgtgttgatatatggagaaaattttatcagtttcctgatgatccttgtaatctgctgagatcaaagtccctaagcaatttagcatcatccgcacgccatgactgtaacgataataagacggtgctcaattttgaatcaaac</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0533700, RefSeq:Os12g0533700