Os12g0539800

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Revision as of 10:32, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0539800| Description = Conserved hypothetical protein| Version = NM_001073479.2 GI:297613297 GeneID:4352430| Length = 2279 bp| Definition ...")
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Gene Name

Os12g0539800

Description

Conserved hypothetical protein

Version

NM_001073479.2 GI:297613297 GeneID:4352430

Length

2279 bp

Definition

Oryza sativa Japonica Group Os12g0539800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:21677446..21679724

Sequence Coding Region

21677446..21677472,21677642..21677684,21677756..21677808,21678049..21678094,21678133..21678694
,21679643..21679724

Expression

GEO Profiles:Os12g0539800

Genome Context

<gbrowseImage1> name=NC_008405:21677446..21679724 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:21677446..21679724 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaaagcgtatttttggtagtggagggcaacgtgtcatggtgggattgcatctgctttgctgaggctgatcttgttgctataagagggactatccagttggtacggaggaacctgcacaaggaagttttaggaataggggaagaaaggggatggttttatgatgtcgagcagcgtcggctcgtgcagatcaggtccaaaacgttgctatctgaggttttgagaggcataggcgcaaatgaggcacgatacagttgccgtgctgtagcagatggctatgttgggtttgctgaggcaactgtttatggtgcaagaggagttggagagccttttgttgttcgtgcacagggtatttcagctataagaccatgtgatgcggaagaaagcgctgcacatgctttaatttctgttatcaagaaagaatgtagtgtggagttcgatgatacaaactggtttgacatgaatcgctatcatgttgagacagagcgactgaagagagctcttgggagagctaggaagaaatgcaatactcttgcaaagaaggcacggttgctggaaatcggctgggatagagctttagattcattgggttctgtcaaccaaatatgtgatgacatatgttcttttgttctaggaggtcctgatgctgatgatcttagtcatcgtgaggttggagtattctacgatgtgcaccgtcttggtgaatatgctgaatcttttgtggacgaaggggacaggagtatacgccttggcatgccaggtgcaaaagaccgctttggtggggtgatattatatggagccctcaagtcctaa</cdnaseq>

Protein Sequence

<aaseq>MESVFLVVEGNVSWWDCICFAEADLVAIRGTIQLVRRNLHKEVL GIGEERGWFYDVEQRRLVQIRSKTLLSEVLRGIGANEARYSCRAVADGYVGFAEATVY GARGVGEPFVVRAQGISAIRPCDAEESAAHALISVIKKECSVEFDDTNWFDMNRYHVE TERLKRALGRARKKCNTLAKKARLLEIGWDRALDSLGSVNQICDDICSFVLGGPDADD LSHREVGVFYDVHRLGEYAESFVDEGDRSIRLGMPGAKDRFGGVILYGALKS</aaseq>

Gene Sequence

<dnaseqindica>1..27#197..239#311..363#604..649#688..1249#2198..2279#atggaaagcgtatttttggtagtggaggtatgtcaagctgttattatgggttgatcgtgctatgccataaaggagttatggccttttccttttatgtttgaccttgggcttttaaagatgtacagtcccataattagtgggctggttttgggatttatgatgcacggcctttttgagttaagctcggttgtcccagggcaacgtgtcatggtgggattgcatctgctttgctgaggctggtatatatgtggtataactggctgcttctttatactgagtggttgcggcggcgctgctactgctttgttagatcttgttgctataagagggactatccagttggtacggaggaacctgcacaaggtatgtgtattaatgtatttgtatatgctccgattaatcttggggacctagatatactcttataaatttgtggtgttagttttgttcggtctcttgcatcttgtttggtctgaaggagctgtgtacgaggggcttgtttttttagatgtgtgattatttttcagttgacccgtgttgatctggatctttatagcagcatatggtgatttggatgatttatatataaatggatgattataggaagttttaggaataggggaagaaaggggatggttttatgatgtcggtatggttagtgatgttgtttttgttatggtttaacagagcagcgtcggctcgtgcagatcaggtccaaaacgttgctatctgaggttttgagaggcataggcgcaaatgaggcacgatacagttgccgtgctgtagcagatggctatgttgggtttgctgaggcaactgtttatggtgcaagaggagttggagagccttttgttgttcgtgcacagggtatttcagctataagaccatgtgatgcggaagaaagcgctgcacatgctttaatttctgttatcaagaaagaatgtagtgtggagttcgatgatacaaactggtttgacatgaatcgctatcatgttgagacagagcgactgaagagagctcttgggagagctaggaagaaatgcaatactcttgcaaagaaggcacggttgctggaaatcggctgggatagagctttagattcattgggttctgtcaaccaaatatgtgatgacatatgttcttttgttctaggaggtcctgatgctgatgatcttagtcatcgtgaggttggagtattctacgatgtgcaccgtcttggtgaatatgctgaatcttttgtggacgaagggttggctaatcttaccagtgttgctgctagatatatctaagcctaaggagacctgcatggattgtttttgggaactaagctgagcgaaaacaacagatgttgtgactgatattatgtccagtattttatcagtagggatcctgcagttgattgtaataagcgtctgttatatagcagcagttgtgtatagctgggtgtgtatgcatggaacagcatgtaggcatgatatatggtggttatgtatttgtctatagtatatagtcagacatatgtaatctgtgatggaatggtagtgtaagtagtaaagccctataatttctatgtatggtggttagctatgtttgtcggtatctggaaattcttgaatactataacagcgtgatcaattaatatgtgcatgtaaatggtctgctgctctcaaatggcatgggtgcttgttttgatgaaaagaattgctgaaaaatagaatagtgcctgaccacatgctttggacataaaagggagaaaaatagagtgtgcctatggtttcaggaatatgcaagtatgctttttcaagaataagctaatcgatgcacggatcgtaagtatttggtaacacatggttgactatagccgctgcatatataagaaacagtaggaaattgtgtttttccggcacaaacataagaagactttgggaaacagtgtgcagcgaatagatatagcaccaattataagagtataagttctggcgatatttgattagaacgtgcatatcgtacagacaccacatactatttatacgaattcatttatcgttctgctagccactagggctcgcaagcctgtaagacgtagaagtaatgtcatttggtctaatggcttgcacaaaagaacacatcccctatttatattcccactgcaaaatacattgggcaaaatatgtgagcattagtcttgcttgatcagggacaggagtatacgccttggcatgccaggtgcaaaagaccgctttggtggggtgatattatatggagccctcaagtcctaa</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0539800, RefSeq:Os12g0539800