Os12g0551900

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Revision as of 10:33, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0551900| Description = Peptidase C48, SUMO/Sentrin/Ubl1 family protein| Version = NM_001190073.1 GI:297729276 GeneID:9268443| Length = 8333...")
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Gene Name

Os12g0551900

Description

Peptidase C48, SUMO/Sentrin/Ubl1 family protein

Version

NM_001190073.1 GI:297729276 GeneID:9268443

Length

8333 bp

Definition

Oryza sativa Japonica Group Os12g0551900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:22595705..22604037

Sequence Coding Region

22595705..22595813,22595860..22596111,22597562..22597668,22597752..22598064,22598704..22598880
,22599145..22599982,22600058..22600237,22600312..22600600,22600682..22600844
,22602616..22602717,22604006..22604037

Expression

GEO Profiles:Os12g0551900

Genome Context

<gbrowseImage1> name=NC_008405:22595705..22604037 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:22595705..22604037 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccggttctcattagatccggtacctttgaccactataaagtgccggcccaggtttataaccgcaacctatgggagagaaccgacacctatgctctatacatatatgtcgccgcctccggatccaccgccgtccgccagccagcgccgccgccgtcgccctccagcgcctggatctacacggcccgccccgccacggccgtcccctcgttggtcgccaccctcgtcgcccgccgccgactccgccaacgccaacgccgtcgtctgtcatcgtcgcccggagctccaaggaccaaggcgtcaggccggctctcacttcttcaccgcggctctcgtccagtggctcttctccgccactgtggtctacaaaggaaaatgtcacgggaacaagataacaattggcctgcaaattctggagaaagcgatggtggtaatgttagcccaagtgataaccccgataacatggaggacgttaatccttcggccacaacgcactctggggatactgccacctcatcgataagaaggggtagaggtccaaccaagatgcccattggcctttacactatcacagcgttagatgcagatgggaaccctacagctccagaatcagcactcaccccatattccaatgctataggtgtcatcgtgaaggatgacatccccatcaagtaccgacactggaagaccagagatccagatgaattggagtggatggtaccagacagagacaaggaacttgcttgggaaaggttgaagcggacattccagttccccgaggaagagataaggcaactgaaggaacgaatggacctgataatggcgaggctcgaaaggcaggatgtaggcgatgttggccgtgtaatcagtccaggtgggaggaaaagcaattccgcttcaattgaggttactcaagaactaggcatggctcgttaccccgtagatgacatccatgtacacagcgatgatgagccaagcgatggtgggtctagctcagaagggcttgttgtctccccccgaaggatgccaacaccactgttgccacgtaagagcccgtctcctccaccagcacactgtaagagcccatctcctccatcgtcaaaacatcagagcttagcttcttcaatcccgctgaagaagcgggggcgcctgtgtaaaacttcccagatgtctgaaccaccatctctgaagaagcccaagaaggtgccactgcctaacatgttggtgccatctttgaaggaaaaaaaggagatgagcgggagcataacattgctccttaaacataaaggggacaaaataaaggaggcgacaaatgtgaaagtgccagttgcagtacatgaccacttcaatcgcatggcaagaccacttgccccaaaaccacctatttcagacttccgacgcacgaccaggaaaaaaagattgaaagaattttcaaagaaagaatttgagaaagacgaggccaacaagaatgtgcaggaatttctggaaggtgcaggcctccaaagtttgtctgatgtagacaatattgcgaagtccccgttggcagctcagttcaagctcggttattctttaactaccgacgaatatcgcaaggtcattggcaattgtactcagatgagaagggtagaagagtggtacttacagatggccaaggagggtaaggtgatgttccccgtcttttacagggacgaggactttcatcactgtgatggtatagtttgggtcccatttaaagaactttttcagctatacaatctgaaggaggtagacttatcgctaattcagttatgggtattaatgggagcacttgaatgtagaacgacccataacaaactaggattcctcgatccacaaatagtcaattccactaaaattgagggaggtgaaaagtccgaaaaagaagtgttggactacctgtacacatcctttgtcaagctacaagacatgaataccatccttttgccctaccactttaagcctcactggatccttcttgctatccatttaaacgattccaagattgttgtcatggatggaatgaggaccccgcaagccaagtttcaatccctcgttgacaccctagataaggcacttgtgaagtataagaagcgtattcaacacgctccgtgttcaaatacattccgggtctggtgccacccttattgctcacgccaggatccgggcacgagtacatgtgggttctacgtgatgaaatttatgagggttttcatggaggatggcaactggaacattacggattctgagaaattaaaactcccgacaagtaaattgctgccacatgtttgcttcagcctcgctaaacaactatgtggattcatcgtcacacatatcatctcgtcgaacggtgcatacaacatttcaagagctcctgctgggctaatgggtttgattgaggctggcggccctaatacaatgggtctgctcctgaaacacttaactgcagatatgggtttaagacaattgccagatggcagagcccctccgtggaggctgtatcagtcatcacctgaaggccctgtgcttgtttcacttgagatttga</cdnaseq>

Protein Sequence

<aaseq>MPVLIRSGTFDHYKVPAQVYNRNLWERTDTYALYIYVAASGSTA VRQPAPPPSPSSAWIYTARPATAVPSLVATLVARRRLRQRQRRRLSSSPGAPRTKASG RLSLLHRGSRPVALLRHCGLQRKMSREQDNNWPANSGESDGGNVSPSDNPDNMEDVNP SATTHSGDTATSSIRRGRGPTKMPIGLYTITALDADGNPTAPESALTPYSNAIGVIVK DDIPIKYRHWKTRDPDELEWMVPDRDKELAWERLKRTFQFPEEEIRQLKERMDLIMAR LERQDVGDVGRVISPGGRKSNSASIEVTQELGMARYPVDDIHVHSDDEPSDGGSSSEG LVVSPRRMPTPLLPRKSPSPPPAHCKSPSPPSSKHQSLASSIPLKKRGRLCKTSQMSE PPSLKKPKKVPLPNMLVPSLKEKKEMSGSITLLLKHKGDKIKEATNVKVPVAVHDHFN RMARPLAPKPPISDFRRTTRKKRLKEFSKKEFEKDEANKNVQEFLEGAGLQSLSDVDN IAKSPLAAQFKLGYSLTTDEYRKVIGNCTQMRRVEEWYLQMAKEGKVMFPVFYRDEDF HHCDGIVWVPFKELFQLYNLKEVDLSLIQLWVLMGALECRTTHNKLGFLDPQIVNSTK IEGGEKSEKEVLDYLYTSFVKLQDMNTILLPYHFKPHWILLAIHLNDSKIVVMDGMRT PQAKFQSLVDTLDKALVKYKKRIQHAPCSNTFRVWCHPYCSRQDPGTSTCGFYVMKFM RVFMEDGNWNITDSEKLKLPTSKLLPHVCFSLAKQLCGFIVTHIISSNGAYNISRAPA GLMGLIEAGGPNTMGLLLKHLTADMGLRQLPDGRAPPWRLYQSSPEGPVLVSLEI</aaseq>

Gene Sequence

<dnaseqindica>1..109#156..407#1858..1964#2048..2360#3000..3176#3441..4278#4354..4533#4608..4896#4978..5140#6912..7013#8302..8333#atgccggttctcattagatccggtacctttgaccactataaagtgccggcccaggtttataaccgcaacctatgggagagaaccgacacctatgctctatacatatatggtgcggcaccgcacctcactccccctcttccccctatctgctgcagtcgccgcctccggatccaccgccgtccgccagccagcgccgccgccgtcgccctccagcgcctggatctacacggcccgccccgccacggccgtcccctcgttggtcgccaccctcgtcgcccgccgccgactccgccaacgccaacgccgtcgtctgtcatcgtcgcccggagctccaaggaccaaggcgtcaggccggctctcacttcttcaccgcggctctcgtccagtggctcttctccgccactgtggtgtgttcccctctcccctcccctgtaaacaatgtatggttgttggatcattgctgataattgtttctttggttgagcctgctgtgctgatttcattgtggaaattgagaaaaagatttttttgctgttgttgagtgggtggtgtggggtgaggagggaggaggacatggatagattggatggaagctgaagaacatgtcacatgggaaatgggatgcatatgcagatgcatgtagagccctcatcaccctccaataaggcagatggatggatagatctgttcataatgcatgtgactcaacgaattttaacatcatttatctccctttaggacccagaagtatgccctgcacaaacacacattgcaccattaagattcagatcggccataattatttttgtaacaagaaaaaggaatacttgcagatggacagtggctcattgaaaattctttgactgcttataccgccatgtcaagtgtgaaaaactgttaacagcttccaagtggtgaatagcctctaatactgatgttctgattggttgatctctgttttaggcgtgaaaattgtttcaaaattcgaaggatctcacctttgtcaaatctgtttcaattagcttctcatgttatcgcacattagcatgagttgtagacacatagagttgttaatttgcatgttcaaagcattgtttactgggatccacttggttttggtttagtttaccaaaagccattttagtcatcaacagttgaaacagtggcctgaaaggctaataggcacacttcttgtaccattatatgggggttacttagtcatttcatttagccatgaatccatataatccatatgtgcctataccttaacatcttgttgaaaaaaatggcgtacagagaggagatcattcctgtagctgtaggtctgtgcatggttgcagcagtcttgctgattgatctgaaatggtcgagtcatgtaaatcattactgcaagctcttataccaagctcccctacagtttgtggtgagtcatggaaattattagtgctctgctttgtctttgctctgataacatagatctagcatcttagcatggtgacaaattatgacatgatttcatcctccttgctccgcctatgaaatattttttgtcgtcaatataatcttttatacaatttttgcttgtaattgctctttttttttgttgctccaataaaaaacatgtgctgttaattaattgattctgaaacttggatgggatatccatttttttgtgtgtacttggtcataaaatgtgtgcaaacctgctaatgttgttgttgtccaaaatctatgctatcgattgttttatctttgatgttattgtctccttggtttccatgaaagggaactccaacaactgttttattcaaaccttgtggttcatgcttaacgtttttttcaatagttctattctaggtctacaaaggaaaatgtcacgggaacaagataacaattggcctgcaaattctggagaaagcgatggtggtaatgttagcccaagtgataaccccgataacatggaggtaaattcacccgtatggaacaaataagacctcaattgtacatatatccgctctgaatgactaatttatacctttctttaaaggacgttaatccttcggccacaacgcactctggggatactgccacctcatcgataagaaggggtagaggtccaaccaagatgcccattggcctttacactatcacagcgttagatgcagatgggaaccctacagctccagaatcagcactcaccccatattccaatgctataggtgtcatcgtgaaggatgacatccccatcaagtaccgacactggaagaccagagatccagatgaattggagtggatggtaccagacagagacaaggaacttgcttgggaaaggttgaagcggacattccagttccccgagggttcagaagaacttgcaaagcacaaggcccttcagaggatgtccctcagcttcaagaagtttaagatggaccttaccaagaagtttgtcaagaaggggttgacaccaaattttgaagatcccaattatcgaaggtgacgccttttctgggatgactttgtggcctacagaacatcagatgaggcaaaggagattagcgaaaggaaccaggccaatgcggccaaaaatttgtaccctcaccgtctcggccctagcggatatgctaagaacgtaggcaaatggcaagagagggaagatgagctattacaaaagggaatcgagatagagacgaaggattggtcccaacgaggaaagaattatcaatacgcccgaggggcaacactctcggatactggcgagttggtacacaagggtccacgatcgcaagaagtgtcccaaaggctccatgatgcccatcaaaagtctttagagggttcttttgttccgaacagggagaaagatgagctcacacttgcattgcagaactctgagcatccgggacgcacaagaggagtaggcctagttccatggagggaaggttttcctgaagacaaacgtaggtaccggtctcggagtaatacaaattctggagaccaatcagaagagataaggcaactgaaggaacgaatggacctgataatggcgaggctcgaaaggcaggatgtaggcgatgttggccgtgtaatcagtccaggtgggaggaaaagcaattccgcttcaattgaggttactcaagaactaggcatggctcgttaccccgtagatgacatccatgtacgtactgcatgcaggctgcatttgccacttcagaacatcactgtagaggtggcacatggtatggcacatcccgtaatggagggtgaaaggatacacggtaatccgataccatgtggctactcaagggtcgaagtggagtatgtgtcgagtagatacagggcaatccaacttgattttgctccagacgagggggtgaacactcttggaaaagccatccacaacattatcctgtggcgcaagcgtttcattgtcttcccttcaggagacagcgatgatgagccaagcgatggtgggtctagctcagaagggcttgttgtctccccccgaaggatgccaacaccactgttgccacgtaagagcccgtctcctccaccagcacactgtaagagcccatctcctccatcgtcaaaacatcagagcttagcttcttcaatcccgctgaagaagcgggggcgcctgtgtaaaacttcccagatgtctgaaccaccatctctgaagaagcccaagaaggtgccactgcctaacatgttggtgccatctttgaaggaaaaaaaggagatgagcgggagcataacattgctccttaaacataaaggggacaaaataaaggaggcgacaaatgtgaaagtgccagttgcagtacatgaccacttcaatcgcatggcaagaccacttgccccaaaaccacctatttcagacttccgacgcacgaccaggaaaaaaagattgaaagaattttcaaagaaagaatttgagaaagacgaggccaacaagaatgtgcaggaatttctggaaggtgcaggcctccaaagtttgtctgatgtagacaatattgcgaagtccccgttggcagctcagttcaagctcggttattctttaactaccgacgaatatcgcaaggtcattggcaattgtactcagatgagaagggtagaagagtggtacttacagatggccaaggagggtaaggtgatgttccccgtcttttacagggacgaggactttcatcactgtgatggtatagtttgggtcccatttaaagaactttttcagctatacaatctgaaggaggtagacttatcgctaattcagttatgggtattgtaagtatactcaacccctcgctcttttttctaagtagatatcctcgttgcatgtttaattttttccttatgcagaatgggagcacttgaatgtagaacgacccataacaaactaggattcctcgatccacaaatagtcaattccactaaaattgagggaggtgaaaagtccgaaaaagaagtgttggactacctgtacacatcctttgtcaagctacaagacatgaataccatccttttgccctaccactttaagtaagtgtggcatttatcgctgtgcctctcatttgtactttaagatgttaattgttctcttcccttgtatgtaggcctcactggatccttcttgctatccatttaaacgattccaagattgttgtcatggatggaatgaggaccccgcaagccaagtttcaatccctcgttgacaccctagataaggcacttgtgaagtataagaagcgtattcaacacgctccgtgttcaaatacattccgggtctggtgccacccttattgctcacgccaggatccgggcacgagtacatgtgggttctacgtgatgaaatttatgagggttttcatggaggatggcaactggaacattacggattctgaggtttgccatgtttcttaagacgtaaatccaagtttctaaacacatagtacgttttcacatcttcaatccttccatttgcagaaattaaaactcccgacaagtaaattgctgccacatgtttgcttcagcctcgctaaacaactatgtggattcatcgtcacacatatcatctcgtcgaacggtgcatacaacatttcaagagctcctgctgggctaatgggtttgattgaggctggcggccctagtgatactttagatagccgatcaatgacaaaggatacatagacttagaattaatgagcagaacgtaccctttaaacattttctatgtatcttgtagatcagttatttggattgatgtggttttcttaatgtcttgaacatgaattaagtttatctatttgttttctacgacacttatctaatcatgtattaagtttctctagttaatatttttatacctaaaagcaacaggtgatctcactgactggatgtggcatggatgaggctgcctattcagggatataggattcgccaaatatgctctcctgctgcaggtattatactgtccctgtaaattctgagttaaattcttatttgaaaaaaaaattggtgttgaatatggaggatgtgaatgtggaggacgtgtgtgatttttgtgaactatttatgacaggtgctgagcaagctgggtaggagtacttatttttactgactcacacactcattgacttgagctggtggtgattagttaaataaatgaaaggaagtacatcagtacgtgcatatgcatttcctgatcagcacatgcatctgcattcagttttcagtactcatgtgctgaaagggttgtactgctgtgctgcgcagtaggtaggtttgcagtagtatataaagtgctaaagcgctttttaaggtaattgttttcgagaatttcacagctttctcaacaaagtttagcttgaacacatggatctaataactagcttccaaatagataggggtaaaaaggaaaagttgagagtgttcacagttagtgtgcaactagaaatttcgctttaatatgcatgcatgtataacgtgatgattcatgaactctgaatattcaagctgaacgtcaggtattataccgttgatgtgaatgtgaatactgagctgaactgcacccattgatgtgaatgtggaggatgtgtgtgatttctatgaatatgcaatttatgtttgaccaatgaaagaaattgtgatcttctaacaggtatagagtaattgcattagcctgtcgttcagaattttcgttactgtacaaagctttggtttacatttttgctagtgtattctacaggtcagattgtttttttgtaccatttacagatgttggattaatttctcgagcacctcaagctgatgttgtacagtccactccagatatacaccttccaactattttctgtggggaatgtgaagtacatgagagttggtcgccaaccagatagcaatgtcttcagttttattgcaggtcaattgatcatgtaatttctagtagattcataccctgtatagtttttcttgcagttctaaatagtcggtatgttgaaataccctgtaatttctaataggtcatccggtcgtcacaccgttagtgcgagagtaggcttaagaccttccttcctttttcctttccttttttcttccgctcccccgtctcccttttttctttggcttggtccctcctgtagattttattcctcttaatacaaaggtgcgcttttgcgtactccccttattttatagtcggtatgtatatcatcggctactcccttcaggtacactcaaaatggtcatagaaatattagcaggctttagagttcactattggccaacagagactcttttctctgaaattgaggtgcattatagccaacttgatagtgtgtgcatgaatgcctatacagagaatattttcttaactgctgatcattgttcctgggtttttaccattattttcttaactgcagatacaatgggtctgctcctgaaacacttaactgcagatatgggtttaagacaattgccagatggcagagcccctccgtggaggctgtatcagtcatcacctggtatagatgaagttacataactcgtcacaatcgttgcataattctgatttctgaagctacataatgctattatcctctgtaaaataaatgaaaatatattctgggtgccaataagtaaagtaaaccattgccttttatacagacagccttagttgaaaacagagcattcagcattgcgcaaatagcgattccttgatattagctaataactacttactatggcttggtatgaacttcaagtgatgcacattgatatcaattttcatcatgcaataattgtaaatccagtgatagtttttaaagaaatgatttgaaatgtttttatgaaatatagaagaaatacaataaattcacatgcaataattttaccgtccttgagaaggtaccatgaggtaccacttatgctaccttccaaatgactgtaaaattgcccaattctagcaacaggagcaaaagtttcattaaaactcaagccctccacctgagtaaaaccttgagtaacaagtctagctttatttcttacaattaaatcatcctcattttgtttatttttgaaaatccatttagttctaataatattatgtccagaatgtgtttcaactaaagtccaaactttgtttctctcaaaatttttaagttatttatgcatgatattaatccatgattcaccagttaaaacatgagtacatctttaggttcgaaaaaaacaacaaacgcaaaatttgcacaaacatcatgaattgttacattagaccttgtagtacgctcaataagattaccgataatttgtttcagtggatatcaccgttgaatatacaaaggggcagcaactttagaagttctttcacgttctgtaccttcattggtcaaagttgtagcctttggagatccatcttgatcagcattaacaaaacccaaacccgaggtccctggccggtttgaccacatgtttatttccgaacctgagccaggtgtagtacaaagtttatttccgattggttagttgcgaatgtgtgaggaaatagagaaaccatcacgaaatctcgacaggtatatagtgagtttttacttggaattgaagtttgataaataggtggaacaagatagagcaccactacagaaatacggaataaggaatttatcctacataatatcgctatgataattttcagggatcgccgcattctgaagatcagcagattacttgataatctacagaatcaactggtttctaattcacactgctagttggtgtacttgccacattttgttccttcttattctccagaaggccctgtgcttgtttcacttgagatttga</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0551900, RefSeq:Os12g0551900