Os12g0563700
| Gene Name |
Os12g0563700 |
|---|---|
| Description |
Virulence factor, pectin lyase fold family protein |
| Version |
NM_001073571.1 GI:115489103 GeneID:4352536 |
| Length |
3841 bp |
| Definition |
Oryza sativa Japonica Group Os12g0563700, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 12:23322566..23326406 |
| Sequence Coding Region |
23322874..23323039,23323682..23323926,23324593..23324799,23324931..23325120,23325863..23326299 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008405:23322566..23326406 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008405:23322566..23326406 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggagattattagtcctagtagtagcagcaataacaattcacctgttcttgcaacatttcttgtggttcttgtagtgctcctagcatcatcacggccagcctcgtcgcagaaccagcaatccttcaccatcaaccccggcggcgccgcggcggcgaggcccggcggcggtaaaggcggcggcggcggcggcgggccgggcagcttcagcgacttcctgacccagaacgtgcagcactacgtgctgagcgagcagaagtacgccgggaaggtgaaggcgctggacgcggagctgtcggcagcggaggccggcgcggcgaggtacgtggtgagcggcgacgggaaggggaagttcaggaccatcaccgaggccatcaaggccgtgccggagtacaacaagaagagggtcatcctcgacatcaggcccggcacctacaaggagaagctgttgatcccgttcacgaagccgttcatcacgttcgtggggaacccgaggagcccgccgacgatcatgtgggacgacagggcggcgacgcacggcaaggacggccagcccatgggcaccatgctctccgccaccgtcgccgtcgaggccgactacttcatggcctccagcatcatcttcaagaacaacgcgccgatggcggcgccgggagcgcatggagggcaggcggtggcgctgcgggtgttcgggagcaaggtggcgatgtacaactgcaccatcgacggcgggcaggacacgctgtacgaccacaagggcctccattacttcaagaactgcctcatccgtggcagcgtcgacttcatcttcggcttcggcaggtccctctacgcggattgcacgattgagtcggtgacgaaggaggtggcggtggtgacggcgcagcagaggagcaagaacattgccgaggccatcgacaccgggttctccttcctgcgctgcaagatcagcggcattgggcagatctacctggggcgggcatggggtgactcgtcccgggtggtttactcctacaccaccatgggcaaggaggttgtgccgatcggttgggacggctgggaagtccagaaacccgagcatagcgggatatactacggagagtacaagtgcagtgggcccggggcgctgcctagcaagaggatcgggtggtcgctggtgctgagcgacatccaggccaagcccttcaccggatcacacttcgtctacggcgactcctggatcctgccgcctcccaagagcatgtaa</cdnaseq> |
| Protein Sequence |
<aaseq>MEIISPSSSSNNNSPVLATFLVVLVVLLASSRPASSQNQQSFTI NPGGAAAARPGGGKGGGGGGGPGSFSDFLTQNVQHYVLSEQKYAGKVKALDAELSAAE AGAARYVVSGDGKGKFRTITEAIKAVPEYNKKRVILDIRPGTYKEKLLIPFTKPFITF VGNPRSPPTIMWDDRAATHGKDGQPMGTMLSATVAVEADYFMASSIIFKNNAPMAAPG AHGGQAVALRVFGSKVAMYNCTIDGGQDTLYDHKGLHYFKNCLIRGSVDFIFGFGRSL YADCTIESVTKEVAVVTAQQRSKNIAEAIDTGFSFLRCKISGIGQIYLGRAWGDSSRV VYSYTTMGKEVVPIGWDGWEVQKPEHSGIYYGEYKCSGPGALPSKRIGWSLVLSDIQA KPFTGSHFVYGDSWILPPPKSM</aaseq> |
| Gene Sequence |
<dnaseqindica>3368..3533#2481..2725#1608..1814#1287..1476#108..544#cattcaataacaccccccccccaaaaaataatactttattcctctctcttaattttatttttttactttgtttgagagagagaggatcaataatttcttgttgaaaaatggagattattagtcctagtagtagcagcaataacaattcacctgttcttgcaacatttcttgtggttcttgtagtgctcctagcatcatcacggccagcctcgtcgcagaaccagcaatccttcaccatcaaccccggcggcgccgcggcggcgaggcccggcggcggtaaaggcggcggcggcggcggcgggccgggcagcttcagcgacttcctgacccagaacgtgcagcactacgtgctgagcgagcagaagtacgccgggaaggtgaaggcgctggacgcggagctgtcggcagcggaggccggcgcggcgaggtacgtggtgagcggcgacgggaaggggaagttcaggaccatcaccgaggccatcaaggccgtgccggagtacaacaagaagagggtcatcctcgacatcaggcccggcacctacaagtaattaactaaatccttttcgatcaaattatcccatccgtcctaaaatatataacggtagtagctttttacataaagtttttgaccattcattttaatatagcttattttattctggcttgttttatcatcaaaatagctataatcttaacatgtacttttatatattcataataattattttaataagacgaatgaacaaatgttatatgaaaaagcaacggcgtcatacattttaagatgaaagcaatataatctgagcatgaaatcatggcggattatatatatatatatatatatatatatatatatatatatagtaaatttgtttggtgctccatggtgcccgggcaccattgttgaaattgagtatataatcaattcaaatgagtatgaaactttttcaattatttaggtattaacattaactactttactaactagttcaaagcaagtttgaactgaatttgaacttgtttttgttagattttgattctaggtatatagcatccatacatataattagttaggtatgtaatcatgaattgtgaaataaagttaaatttgagttgttttgttgatagatatatgtatgaatcgaattcttataactaggtatatactcacaatttaaaaaatttgaaaaatttgagtaattttgtgcatttgaaaccatggtgcccgggcaccatggtgccccatatgagtgtcctatatatatatatatatatgaccgaattagggagaagctgttgatcccgttcacgaagccgttcatcacgttcgtggggaacccgaggagcccgccgacgatcatgtgggacgacagggcggcgacgcacggcaaggacggccagcccatgggcaccatgctctccgccaccgtcgccgtcgaggccgactacttcatggcctccagcatcatcttcaaggttaattcagctaacacatacacacattcccctctctctctctctcgaccaatcgtccatggagctagactcacgcaaggacgtcgtcatcgtcgtcgtcctcgtcgccggtgatgcatgatgatgagtagaacaacgcgccgatggcggcgccgggagcgcatggagggcaggcggtggcgctgcgggtgttcgggagcaaggtggcgatgtacaactgcaccatcgacggcgggcaggacacgctgtacgaccacaagggcctccattacttcaagaactgcctcatccgtggcagcgtcgacttcatcttcggcttcggcaggtccctctacgcggtacaatcgatatctcgcgggcataaatattttatgtttatgacaagattttgaccaaacattattaaagccgatctagatcgatctgcaattttatctcagtattaagtttataaaatctaatagtttttatgatattatgatggtggttatttccgaagcaaatctatgtatgtcatttgctttctttgtaaactaaggattcacaaaattattaatagtaaaaatcttagaagttaatgaccaaatcttatccaaaatccaaaagtacggcaaatatttatgaccggaggaagtaacaattctctaaatattaaactaataattcttatatagttttttttaaaaaaaatcttgtattctataaagcccctaaatcattttgccttgtccttactaggtattcgtgaagtaaacataattctaacattaacaaaaaaaaaagggtgtacttcctctatttcatagtataaaacgttttagcttttaaataaattcatgcacgcatctatgtacgtgctttatatatatatatatgttcaaattcatgtggatgccagtaaatctatacgagagatggagataccaaaatatcttataatgtgaaacagagagagtaaaaatctctatattatattgtgtatatatatatacacacacacgtaggattgcacgattgagtcggtgacgaaggaggtggcggtggtgacggcgcagcagaggagcaagaacattgccgaggccatcgacaccgggttctccttcctgcgctgcaagatcagcggcattgggcagatctacctggggcgggcatggggtgactcgtcccgggtggtttactcctacaccaccatgggcaaggaggttgtgccgatcggttgggacggctgggaagtccagaaacccgagcagtaagtgacaattgatctcactctgatcgatctcttaccctatcaactctttttagttaaaaaagaagagttaattagtaggcaagtgctctgccgatcaaggtccatgtatgctagttgtatgtatccacgcgtgaagttatcaggcactcttagtttatcagccatagccaaaatttgatttcaaaactcgattttattggagttgtttaatcataaaaaaatttccaaaaaaattgatttaaacgtaatcaattatctaaaatcaaaatcaattgttttacataacggttttacccaaatatatttatttaatttttttcatggtttatcaatcgtacctcaaaagatgattggactatcggtgatgaatactacctccgttctaaaatgtagttatttctagcatagtaccttgtcccgaaatgaagttatttctccacctacctgcttatctcaaccaatcacaaccattcccttttacctactttctattttcaaccgattacacacttcaatcattctcatatactttcttaattaataccagtgtcaaccttaaaaatatttacattttaggatgaggggagtatgacactaatgcccgtctaatttgataataatttttattacttgctgcagtagcgggatatactacggagagtacaagtgcagtgggcccggggcgctgcctagcaagaggatcgggtggtcgctggtgctgagcgacatccaggccaagcccttcaccggatcacacttcgtctacggcgactcctggatcctgccgcctcccaagagcatgtaattctgcctgggctgggctagctaaccacaacatgtgttgtgtagggccgtgattttttccagcccattgggccgacaccctcttgactggttgcagttaagcagaggttggttttattatttgtttggaactatgatttgaagatcatatccaagcatgcatgcacatactttgcattattggggggagcatgatgttctgaggagcggctgatgagaatctggaatgagtagttctacaagcttatggcttcttttgtattcggattctgataatctgagtgagaatctgtgttgtttgagaagctg</dnaseqindica> |
| External Link(s) |
