Os12g0606100

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Revision as of 10:36, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0606100| Description = Spc97/Spc98 family protein| Version = NM_001073761.2 GI:297613499 GeneID:4352744| Length = 6377 bp| Definition = Or...")
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Gene Name

Os12g0606100

Description

Spc97/Spc98 family protein

Version

NM_001073761.2 GI:297613499 GeneID:4352744

Length

6377 bp

Definition

Oryza sativa Japonica Group Os12g0606100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:25831432..25837808

Sequence Coding Region

25831432..25831558,25832432..25832592,25832720..25832911,25833068..25833162,25833492..25833654
,25833752..25833862,25834458..25835588,25835660..25835812,25835907..25836006
,25836180..25836274,25836355..25836528,25836598..25836654,25836734..25836805
,25836998..25837096,25837167..25837298,25837396..25837569,25837677..25837808

Expression

GEO Profiles:Os12g0606100

Genome Context

<gbrowseImage1> name=NC_008405:25831432..25837808 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:25831432..25837808 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcaaccataacaatagtgcgcatcacgataggggaggagaaaaagatatgtcggttcctaaaggttaaggccgcgcatgtaaaggcaaaggggagaaacgattgtggctcatggagaaagagcgggtctcgagtggatccacccatggttcttccccagcaaaacgcgggattgatggaggccgatggctctgcgagctttatacgcaagctgcagctcagcgtttctgatggccttcctcatgcggcgcctgttccagaactgagtacgcaagagcatgaattggttaaaagtgttttccaagtgctccaaggctttgacacggtcttgctctactgggataagactgcacctggatactgtgagaaagcaggggtctatgtttcgcacctgtcgcagacgagcctcagagctgtgctcaagccttttctgtttgctgcgacatggttgaagcaggtggagctctttgttgggaggaggctccgcaaagcagctctgaaggaggaagagcagttgtttctttcagttgacaggactataactctgctgggattgactgattctatgtcaagtttatgttctggagcagaacatttgtatcaagttgtgcaaggagctgtgcctgatgccttttggaattctggcgcacagatagcatctagtgaagtggcggttcatgctgtaaaccatctttttaagaagttaaatgaagtctgtcttgtggaagatggcgagggtgaaccttatcatatgctgcttgtgatattcgctgaaaccttgttaccatatctccagtgtcttgattcctggctctatgatggtattcttgatgacccttatgaagagatgttcttttacgcgaacaaagcagttacaatagatcaaccagcattctgggaaatgagttatatgctcagagtacgaggaccacgaactgatagctcatcaacattagctgacaatgaatctatcaggaaaaaggaattaatcaaccaggaagcaactgctgcagcagctctcttgaaatctagcaatcaaggttgcgcggacatattatgcccagtgttcttgaaagatattgcaagagccattttatctgctgggaaatcatttcagcttgttcagcatgttcaagagacacatcggattcaaactcgtgaagtcgtacatgagtttaatgttgatcagcatggcaattacattagtcaacagaagtttcggcctgatacctcaagtataagaattcaagataagcgtgaagatattattgaagaatctgcaggccagtttggaaataatgcttgcaaaatgggtttcttaaccttgtctgagagtttcttgatatgcctatctggtctgttggaaaatggtgaccatgttgatgattacttaagaaagttgtgtgctgatcatgctccagttaacaaatcaattgtgcacagtaagagtaatgtacaagaaacagaagaggtatgtggagaaaacagctctgagaagacttggttaaagctcctaagagatgctacatcaggtagggactatgacggcatggagaaaactttagcaaaaaatgctgttatgagggatccaacatttgtccctggagatcatcaagatgtatcttccactgcagtagaaagccatttcaacctatcttgctatgaaaaccctggcatcactgcttgtcaagaaatactagagaggaacaaaaactcctggagcgacttaaatatctctaaaagtttccatcttcctccactgaatgatgagaacatacggaagtctatatttggtgatagagactcttcagggactagccctggtgataccctatctacaacatatttccccagactagacggaactgattacaagtttggttttcagtttgatgattcagaatatatccgccaagaggatgacaggagaaccttggagtctctctatacattcccgactcttctgccatgtgtaaatgaaaatgtcccgctgtcagagatcttacctttgcagaaagatagcacacttgcctcaagagctttgaagtttattcagagcatgagtttgagagatcctcttcaaccagttggtatcatccaagaatgcctttctaaatgtataaagagacaggttgatcacattggcaagcaaatcttgtcaaagctaatgggtgactggagattaatggacgaactctttgttttacgtgctatttatttgctagggtcaggtgacatgctgcagcagtttctggtaacaatttttgacaagctcgataaaggaaatccctgggatgatgattttgagttgaatactttgctacaggaatccataagaaactcagctgacaaaatgctcctgactgcgccagattctttggttgtctcgttagcaaagcatgatacgcgcaacgatgaagaaactacatcaatttctaggaaaggtcgtgcacaaggttttggcattgaggcacttgatgtgcttaattttacatataaggtgtcttggcctcttgatctgattgtcaatacggaggcactgaagaagtataaccaggtcatggcattcttactaaaggtcaagcgtgcaaagtttattttggacaaaactcgaaagtggatgtggaagggcggaggtagcactacgcataattttaagcaacatttaatagttgagcagaagctccttcattttgttgatgcatttcatcaatatgtcatggatcgggtataccatagtgcgtggactgagctttgtgatggcatggcatccgccactacactggatgaagtcatggaagttcatgaagcatacctctcttctattcagcgacaatgctttgtggcctctgataagttgtgggccctcatagccagtcgagttaagaccattcttggattggcacttgacttccacaacatagaacagactcttggtactggtggaactgctccagccgtcaaggcaagatgtgagatggaagtggatcgcatcgagaagcaatttgacgagtgcgttgtatttctcctgcggatcctatctttcaagctcaatgttggtcacttcccccatctggcggatctcgttacgagaatcaattacaaccactattacatgtctgacagcggaagcttctctgccatccctggatctcggccacggtag</cdnaseq>

Protein Sequence

<aaseq>MATITIVRITIGEEKKICRFLKVKAAHVKAKGRNDCGSWRKSGS RVDPPMVLPQQNAGLMEADGSASFIRKLQLSVSDGLPHAAPVPELSTQEHELVKSVFQ VLQGFDTVLLYWDKTAPGYCEKAGVYVSHLSQTSLRAVLKPFLFAATWLKQVELFVGR RLRKAALKEEEQLFLSVDRTITLLGLTDSMSSLCSGAEHLYQVVQGAVPDAFWNSGAQ IASSEVAVHAVNHLFKKLNEVCLVEDGEGEPYHMLLVIFAETLLPYLQCLDSWLYDGI LDDPYEEMFFYANKAVTIDQPAFWEMSYMLRVRGPRTDSSSTLADNESIRKKELINQE ATAAAALLKSSNQGCADILCPVFLKDIARAILSAGKSFQLVQHVQETHRIQTREVVHE FNVDQHGNYISQQKFRPDTSSIRIQDKREDIIEESAGQFGNNACKMGFLTLSESFLIC LSGLLENGDHVDDYLRKLCADHAPVNKSIVHSKSNVQETEEVCGENSSEKTWLKLLRD ATSGRDYDGMEKTLAKNAVMRDPTFVPGDHQDVSSTAVESHFNLSCYENPGITACQEI LERNKNSWSDLNISKSFHLPPLNDENIRKSIFGDRDSSGTSPGDTLSTTYFPRLDGTD YKFGFQFDDSEYIRQEDDRRTLESLYTFPTLLPCVNENVPLSEILPLQKDSTLASRAL KFIQSMSLRDPLQPVGIIQECLSKCIKRQVDHIGKQILSKLMGDWRLMDELFVLRAIY LLGSGDMLQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVSL AKHDTRNDEETTSISRKGRAQGFGIEALDVLNFTYKVSWPLDLIVNTEALKKYNQVMA FLLKVKRAKFILDKTRKWMWKGGGSTTHNFKQHLIVEQKLLHFVDAFHQYVMDRVYHS AWTELCDGMASATTLDEVMEVHEAYLSSIQRQCFVASDKLWALIASRVKTILGLALDF HNIEQTLGTGGTAPAVKARCEMEVDRIEKQFDECVVFLLRILSFKLNVGHFPHLADLV TRINYNHYYMSDSGSFSAIPGSRPR</aaseq>

Gene Sequence

<dnaseqindica>1..127#1001..1161#1289..1480#1637..1731#2061..2223#2321..2431#3027..4157#4229..4381#4476..4575#4749..4843#4924..5097#5167..5223#5303..5374#5567..5665#5736..5867#5965..6138#6246..6377#atggcaaccataacaatagtgcgcatcacgataggggaggagaaaaagatatgtcggttcctaaaggttaaggccgcgcatgtaaaggcaaaggggagaaacgattgtggctcatggagaaagagcggtgcgtagagtggcagttaattagcggttgctggtggtatgaggaatttgttcttgacacaatcgtttaattttttcctaagtattgatgatacgttggtcaccagttatataaagaaatagcactagctagttttaaaataccgtgttgtcccaaaataagtgcaaccatgacaatccgtgtcgaacttttgatcgtccgtctttgaaaagtttatgaaaaaattaaaataaattagtcacatgtaaaatattattcatgttttatcatctaataataaaaaaaatttaaataagacaaaagttaaacattggacggagggagtggtaaataaaaatattgagtcgagtatcgcgtaaaagagaaagaaatctctggttgtctcctccgctccttgcgccgccgccaagacgagtcgcggctgaacaggggaggggagggctgggcggcgatctctatcgcagcggaggggaggggaggggatcctggtgcgtcctctttctgattcatctctctctctctctccctcccaccccaccgggactggaatctgcttgcgcttctcttctagatcttctcctcctccttgatttgatagccttaaacctctcttaaataattcaagtaataacagtttgtttgttcacccagaagtcccaagttggatccgcccctgtttattttgtgattttgggtggccattttggggacttgggtgcaatgtttctctgcccaccctggtacaatctgcatttaatttttttttattcaacctgcaaagttatgcaaatttatggcgtcaattgaaatggatggccaatgtacctagctcaatgtgcaattaactctttttcattcacgcaaatgtcgcagggtctcgagtggatccacccatggttcttccccagcaaaacgcgggattgatggaggccgatggctctgcgagctttatacgcaagctgcagctcagcgtttctgatggccttcctcatgcggcgcctgttccagaactgagtacgcaagagcatgaattggtgggtaattcattctgactgccttcacgtctgttcctttcattctcagtgggaattggtgctatgcttcttttatgtgtatgatatcatgtagatatgcactatattggtgttgcacatgttacaggttaaaagtgttttccaagtgctccaaggctttgacacggtcttgctctactgggataagactgcacctggatactgtgagaaagcaggggtctatgtttcgcacctgtcgcagacgagcctcagagctgtgctcaagccttttctgtttgctgcgacatggttgaagcaggtggagctctttgttgggagggtaagatcgtgcggtcatggaactccgacgctgagtgcatttgctagttcggtcgattcttggctaatggtgaggttgcaattcagactgtgcatagatttttcggggatgatgtttgttttgtccgaaattacattgttgtcatgttaatatcagaggctccgcaaagcagctctgaaggaggaagagcagttgtttctttcagttgacaggactataactctgctgggattgactgattctatgtcaaggtcatggtctattctactataacattactgttgtacgaaatggataactaggttagtttttagtagtgatgttgtatgctactataggtgattctagagacatcagcaactctatgtaatgtgtgatggcaaaaaaagttgcatagagatatgagattatagagacatgatagtatagtccttttttttttcctttttacctttttaggtaattttctaaaagccggagaggactgtacaactgacaacttgtgttttcagtttcatgcttctttatcacttgacagattgttgctttcactcaccccataatataaaatcttatgcagtttatgttctggagcagaacatttgtatcaagttgtgcaaggagctgtgcctgatgccttttggaattctggcgcacagatagcatctagtgaagtggcggttcatgctgtaaaccatctttttaagaagttaaatgaagtctgtcttgtggaagatggcgaggttgccacaaaaaagccagttgtccaaatacttggtcttatttgtttattaacagaatgttcaactctcttacatttgaaatctttataaattccagggtgaaccttatcatatgctgcttgtgatattcgctgaaaccttgttaccatatctccagtgtcttgattcctggctctatgatggtattcttgatgacccttatgaagaggtattgaaggaagacattttttgaactacattttgaaattattaactggtattcttaaatttaaagttttctctacacgttagctgtgaaatactgtaaggatggccatcctttgcttgacctgagctaccttggttcaaacataaatcatgataatatcattatgttataaacgcaaatgtttttttttgttggattggcgcttggcagagatcttaatcctattcgatttgtctcctgaaagtcacatataagtatatgcaattatgatcctgacctgtatatcttctactccgtatgagcatactataatcctttctagtataaggttattactcttgtgtctgaaatgtttctttgtgttgggctcattttttaagtttggtgagtcttataaacccttccgttttattaatgcctgctgaggagttgcgtgtgatcatgtagttaaacattacctcgatgcctaatgtaatcctgttagggatgtaagtcctttaattttaattttattgagcaactgtcatgaaatgtgttacttaaatttgcatttttaaaacttccctgttgtggtttgggaacctgttttctgcagatgttcttttacgcgaacaaagcagttacaatagatcaaccagcattctgggaaatgagttatatgctcagagtacgaggaccacgaactgatagctcatcaacattagctgacaatgaatctatcaggaaaaaggaattaatcaaccaggaagcaactgctgcagcagctctcttgaaatctagcaatcaaggttgcgcggacatattatgcccagtgttcttgaaagatattgcaagagccattttatctgctgggaaatcatttcagcttgttcagcatgttcaagagacacatcggattcaaactcgtgaagtcgtacatgagtttaatgttgatcagcatggcaattacattagtcaacagaagtttcggcctgatacctcaagtataagaattcaagataagcgtgaagatattattgaagaatctgcaggccagtttggaaataatgcttgcaaaatgggtttcttaaccttgtctgagagtttcttgatatgcctatctggtctgttggaaaatggtgaccatgttgatgattacttaagaaagttgtgtgctgatcatgctccagttaacaaatcaattgtgcacagtaagagtaatgtacaagaaacagaagaggtatgtggagaaaacagctctgagaagacttggttaaagctcctaagagatgctacatcaggtagggactatgacggcatggagaaaactttagcaaaaaatgctgttatgagggatccaacatttgtccctggagatcatcaagatgtatcttccactgcagtagaaagccatttcaacctatcttgctatgaaaaccctggcatcactgcttgtcaagaaatactagagaggaacaaaaactcctggagcgacttaaatatctctaaaagtttccatcttcctccactgaatgatgagaacatacggaagtctatatttggtgatagagactcttcagggactagccctggtgataccctatctacaacatatttccccagactagacggaactgattacaagtttggttttcagtttgatgattcagaatatatccgccaagaggatgacaggagaaccttggagtctctctatacattcccgactcttctgccatgtgtaaatgtgagactgattctgaagtatagtgtcttgttcatgttttcttattagttgttaaccttttcacccttcaggaaaatgtcccgctgtcagagatcttacctttgcagaaagatagcacacttgcctcaagagctttgaagtttattcagagcatgagtttgagagatcctcttcaaccagttggtatcatccaagaatgcctttctaaatgtataaagagacaggtctgctcaaacattatactagcatttagttatttacgttatatatcttgttagtcgtccgtataacaggtttttgcattttccccctcaacaggttgatcacattggcaagcaaatcttgtcaaagctaatgggtgactggagattaatggacgaactctttgttttacgtgctatttatttgctagggtcaggtattatgctatcaacctatcattgagttgttcttaacctctcgtaatattttccctgaaaaaatctttttactatgtctaggttaaatacatgtttcatcaaagaaacaaacattattttcaaaccaaatgtagaaataaatacaattctattgaccaacttgagccttcaggtgacatgctgcagcagtttctggtaacaatttttgacaagctcgataaaggaaatccctgggatgatgattttgagttgaatactttgctacaggtgattcactatgctaatctagtgcgacaaaattgatgccacataaggatcttaatagctttatcaatttttgtctgcaggaatccataagaaactcagctgacaaaatgctcctgactgcgccagattctttggttgtctcgttagcaaagcatgatacgcgcaacgatgaagaaactacatcaatttctaggaaaggtcgtgcacaaggttttggcattgaggcacttgatgtgcttaattttacatataaggtatgcacaaaacagcaccaatattctgcgttctttaccatgtgttcatgttatgctgttgggtggcaggtgtcttggcctcttgatctgattgtcaatacggaggcactgaagaagtataaccaggtacttactttctagactaattatttaacagtgccatgtatttgatggcttttgaccttttgctgttttgctcgatcaggtcatggcattcttactaaaggtcaagcgtgcaaagtttattttggacaaaactcgaaagtggatgtggaaggtacttatccatcctataaccctgtcaccatcttatggaatctatttatttatttatttttcatgttgtcgtctgataaatctggaaacagtataaactcatatagtgtttgatagttgggtacttgaacctgctctaacttctcaatatgatagattcattctgatgtatcaaacctttccccactggcagggcggaggtagcactacgcataattttaagcaacatttaatagttgagcagaagctccttcattttgttgatgcatttcatcaatatgtcatggatcgggtgagttgggtatttttgatccattcctttctacatctctctactgtactcatgacacagttttgagtaggtataccatagtgcgtggactgagctttgtgatggcatggcatccgccactacactggatgaagtcatggaagttcatgaagcatacctctcttctattcagcgacaatgctttgtggcctctgataagttggtgagtaacttgtcgttcttattacaatcatcaaagcttaattccaaaaactttattctagctaagattgttcattgcggcaattgcctgtgtgcagtgggccctcatagccagtcgagttaagaccattcttggattggcacttgacttccacaacatagaacagactcttggtactggtggaactgctccagccgtcaaggcaagatgtgagatggaagtggatcgcatcgagaagcaatttgacgagtgcgttgtatttctcctgcgggtatgtttcctgtttccatctactaccagcaaaactcgatgatctcctatgttgtctgaacttggtattttcagtagattcatgacaatctcaatatcctttttcagatcctatctttcaagctcaatgttggtcacttcccccatctggcggatctcgttacgagaatcaattacaaccactattacatgtctgacagcggaagcttctctgccatccctggatctcggccacggtag</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0606100, RefSeq:Os12g0606100