Os12g0609800

From RiceWiki
Revision as of 10:36, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0609800| Description = Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain containing protein| Version = NM_001073777.1 GI:1154...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os12g0609800

Description

Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain containing protein

Version

NM_001073777.1 GI:115489515 GeneID:4352760

Length

6109 bp

Definition

Oryza sativa Japonica Group Os12g0609800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:25978578..25984686

Sequence Coding Region

25978640..25978759,25978844..25979032,25979141..25979305,25979540..25979936,25980017..25980135
,25980815..25980892,25981028..25981168,25981306..25981350,25981488..25981654
,25981724..25981802,25981876..25981958,25982110..25982239,25982323..25982455
,25982846..25982994,25983230..25983425,25983977..25984179

Expression

GEO Profiles:Os12g0609800

Genome Context

<gbrowseImage1> name=NC_008405:25978578..25984686 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:25978578..25984686 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatcaccggcggccagagctacgtctccgcgccgccggccttctcggccgacgggcgtctcctcctcgcctgcaccggccgcaccgtctccgtcttcagcgcctccaccggcatgctggtgtcggagctggaggggcacgagggggacgtcacggcggtggtggtggcgccgccgccggtggcggcggcggcgaagctcgcgagctactgctggacggcggggcttgacgggtttctggtttactgggacttcgcggcggcggagctggtgcggaaggtccaggtcggcctccccgtgcactccatggtcattcctaacatagccagaatatcgagaggagctgaaatttacacgccgtttgcattcgtctctgttgaagacaccagtaagccatctaatgagaaattgcgcgggcagttgcgaatttatgacttaaccaaagggcgtcaagtgggtagtcttctggctgagacccgtaaaccggaaatgattgttgcaagtagctctggtgaatttttgggtattacaaataagagaaagctccatgtatggaggataccaacaaaaaatttcaagcccgacaagataaggaagataaagcttagccacacaaaaaacttgaacacactggccttccatccaagtgagagaattgttgctagtggtgatgcaacggggcgaatactgatctggagaggttttggaaatgcaaagttttctggatcagatggcacaaaatctgaactagatgaagacaggggtgatgtgaggggtaatggtgatgcagatacttgcactacatggcattggcattcaagcggagtgaggtttctcaaattttctactgatggagcttacttgttctcaggtggtatggagggagttattgttgtatggcaactagatactgggaagagaagatataaaccacgtctagggtctcctcttttgtcctttgtagattctccggattcttccattgcctgtgtgtcatgtatgaataaccaagtccatcttctaaaaatgcccaacatggaggtcatgaaatctattgctggaattaagctacctatatcttcaccaaacctgggtggttgttatcgagatgtgtatggatttgattacagtaacaaacttgttgctgtgccaacagaagattattgcatacagttctacgatttatttgagaatactgaagtttcagaggtgcaagtttgtgagaggaactttcaccctgttgatgatatcacaatgtacatttccttagtttcattgtcaattgatggtaagtttatgtgcaccattgatgtcaagcttcctgaagaagaattaggtgggcttgttacattgaaattttggaaccaagggtctcgtgctggacaatattttttgtccactgtcatttatgagccgcacagcgatgctggaatttctgctattgctttccgccctggaaaaaacatggctgtgagctcttcatttggtggcaactttaaggtttgggtccaaagtatgctttcacaaccaagtgatgaaaaaaatcaatctggttggagatgccaatccgtcggctcatacaagaataaacctatgacagccgcaactttctcaagcgatggatctgttcttgcggttgcagctgagaatgtcgtcacattgtgggatcctgataataacacacttgttggtgtgattgcagaggcactatcgcccatcacaaaactttcgttcattgggacatcaccatttttgatgtctctatctcagagctccaaaccacaggttgccatgtggaatgttccaaatctttccatgcaatggtcttacagcctctttgcagaagctgcgtgttgctcgtcaagtagaagtgagtttgcagttcttgctcttctaagctgtcctgatggagaaacactggcagagcaagatggggtgatactacttttcgatgcagaaaatccaaagcctgtttcttcctggtcagtaaagaaggcaaggggaggcagcgttgcttttttgaagggtgattcctctttggatgcaaacagaaaagacaggatagatggagaggcatcatcgctggtttatgtcaacggttctcatgagtatgttatatttgatccccgaagcaatgaagaattgcatattggcaagagtgcacacaaaaatattcaaactgaggagcctggaccaattggttatgcttctatttttggagaacttccgaaactggagtcaaagaaagatgttccagaaattctatttataccgtcagagagaccttgggagactatattcagtggatcaactcatgttcttccgcctctcacaaagttatgtcctgcattcttggcatcattgcttgagaagagaccagttgcaaatgagtga</cdnaseq>

Protein Sequence

<aaseq>MITGGQSYVSAPPAFSADGRLLLACTGRTVSVFSASTGMLVSEL EGHEGDVTAVVVAPPPVAAAAKLASYCWTAGLDGFLVYWDFAAAELVRKVQVGLPVHS MVIPNIARISRGAEIYTPFAFVSVEDTSKPSNEKLRGQLRIYDLTKGRQVGSLLAETR KPEMIVASSSGEFLGITNKRKLHVWRIPTKNFKPDKIRKIKLSHTKNLNTLAFHPSER IVASGDATGRILIWRGFGNAKFSGSDGTKSELDEDRGDVRGNGDADTCTTWHWHSSGV RFLKFSTDGAYLFSGGMEGVIVVWQLDTGKRRYKPRLGSPLLSFVDSPDSSIACVSCM NNQVHLLKMPNMEVMKSIAGIKLPISSPNLGGCYRDVYGFDYSNKLVAVPTEDYCIQF YDLFENTEVSEVQVCERNFHPVDDITMYISLVSLSIDGKFMCTIDVKLPEEELGGLVT LKFWNQGSRAGQYFLSTVIYEPHSDAGISAIAFRPGKNMAVSSSFGGNFKVWVQSMLS QPSDEKNQSGWRCQSVGSYKNKPMTAATFSSDGSVLAVAAENVVTLWDPDNNTLVGVI AEALSPITKLSFIGTSPFLMSLSQSSKPQVAMWNVPNLSMQWSYSLFAEAACCSSSRS EFAVLALLSCPDGETLAEQDGVILLFDAENPKPVSSWSVKKARGGSVAFLKGDSSLDA NRKDRIDGEASSLVYVNGSHEYVIFDPRSNEELHIGKSAHKNIQTEEPGPIGYASIFG ELPKLESKKDVPEILFIPSERPWETIFSGSTHVLPPLTKLCPAFLASLLEKRPVANE</aaseq>

Gene Sequence

<dnaseqindica>63..182#267..455#564..728#963..1359#1440..1558#2238..2315#2451..2591#2729..2773#2911..3077#3147..3225#3299..3381#3533..3662#3746..3878#4269..4417#4653..4848#5400..5602#gccgccaccattctcccctccgccgcaaaaccctagctcccaaacccctcgccgccgccgccatgatcaccggcggccagagctacgtctccgcgccgccggccttctcggccgacgggcgtctcctcctcgcctgcaccggccgcaccgtctccgtcttcagcgcctccaccggcatgctggtacgcgccatggagagagagagagattttgtggctcgctgtggttttttttttttggttaccgatgggggagtgtgtttgcaggtgtcggagctggaggggcacgagggggacgtcacggcggtggtggtggcgccgccgccggtggcggcggcggcgaagctcgcgagctactgctggacggcggggcttgacgggtttctggtttactgggacttcgcggcggcggagctggtgcggaaggtccaggtcggcctccccgtgcactccatggtgagccgctttgcgaatttcgtcgccttggttgctaccgttttgttgtgagcagtgaattgggcaaatgtttataggttaattttttttattgtgttttgggcgcaggtcattcctaacatagccagaatatcgagaggagctgaaatttacacgccgtttgcattcgtctctgttgaagacaccagtaagccatctaatgagaaattgcgcgggcagttgcgaatttatgacttaaccaaagggcgtcaagtgggtagtcttctggctgaggtacaaattttacctgtcccagttcgttttctaaccattttcctgcgacaatatgtttttagatattttattattgatcatgctatgaatagtgagcttccatttggaaatgtagtttgctgctaatgttgctattgcaattagaaatataacaataatattgtgctgtagtatctgtggtaaggttttctattaaaacttacatcaatgtgttgtttgcttcgatttaaacagacccgtaaaccggaaatgattgttgcaagtagctctggtgaatttttgggtattacaaataagagaaagctccatgtatggaggataccaacaaaaaatttcaagcccgacaagataaggaagataaagcttagccacacaaaaaacttgaacacactggccttccatccaagtgagagaattgttgctagtggtgatgcaacggggcgaatactgatctggagaggttttggaaatgcaaagttttctggatcagatggcacaaaatctgaactagatgaagacaggggtgatgtgaggggtaatggtgatgcagatacttgcactacatggcattggcattcaagcggagtgaggtttctcaaattttctactgatggagcttacttgttctcaggttttgcttgctgatttgtgttcattcagttgtgattctagggttttatgcttttcaatgacaagttccttatcttataggtggtatggagggagttattgttgtatggcaactagatactgggaagagaagatataaaccacgtctagggtctcctcttttgtcctttgtagattctccggattcttccattgcctgtgtaagtatccccatattttacatctcccattgaacttcgttgcacctgatatagtaatctgaagagtgaaaaacacactatttttgttgatttaagagttatttgaatatgatgttgccacatagtagcctccagtcacaaaaacaagttgttttggacttatctaagtccacattatacaactttttactgcctagttctttagcataaattttaaaaaagtttatataactgtaatattatgaaagctcttgttatgacaaaattgaatttatcagtttcatttgcataccggaatactatattttaactgatatttatggtcaaagaactcgtgttgactgcatgcattttaaattgacttgtttttttgtggccagagtgagcataattatatatcataatcatacatgtccacattaggttacatgatgttattagaaccatatgagaaaactagaatggttcagcacttcagcatctttttatggtaacacatttacttcctaatgggctgtactgatgatgggggctcataaagtgtagcaggtagcatttttgtattagacttttttttggctctatgattgtttcaaactaccgtttctttttgtctgtttctgtttcatttgtttgcaattcatttttgaagtagagcttaatgttctttgtatttcaggtgtcatgtatgaataaccaagtccatcttctaaaaatgcccaacatggaggtcatgaaatctattgctggaattaaggtttgtaatagcataaatatgccctttaagagcccactctaatccaaataaattgtattgatgatctctgctgtttcactttttggtgattatattatgtgctaatggatgtcttttatttgtttatctcttcagctacctatatcttcaccaaacctgggtggttgttatcgagatgtgtatggatttgattacagtaacaaacttgttgctgtgccaacagaagattattgcatacagttctacgatttatttgagaatactgaagtttcagaggtaaaacagtaagcatatgagagcatttcatcatattttatccagttctgtggttctcagtatattgaatcggtacttgtcttcctgttctggttttgtgcaagaatatcccatcccaatatttttactttctacaggtgcaagtttgtgagaggaactttcaccctgttgatgatatcacagtgagataacaacttccttttgcttgtaccgtagatttcttttgttaggttcttgtggcttaaaatttttctttgtttttcacatttattttagtatccagaagtttgctctgatgagaatgctttcctttccacagatgtacatttccttagtttcattgtcaattgatggtaagtttatgtgcaccattgatgtcaagcttcctgaagaagaattaggtgggcttgttacattgaaattttggaaccaagggtctcgtgctggacaatattttttgtccactgtcatttatgagccgcacaggtaccaacatgactatataaggtcaattataaatggttgcatatgttctcttaccattctttcatacagcgatgctggaatttctgctattgctttccgccctggaaaaaacatggctgtgagctcttcatttggtggcaactttaaggtgtgcatatctattggttattgagatgatgctctgcgtatctatttcttaatttttactgttttacctgtaggtttgggtccaaagtatgctttcacaaccaagtgatgaaaaaaatcaatctggttggagatgccaatccgtcggctcatacaagtgagttgactttgttaatttaatttccctttaaacaatacctcaatattgctgccataagcatatatgttattgtttatgctgctataatatcatctattaatttgtggcaaatgttgtaaatggtgacgtaaaaaatgaaaaattgcaggaataaacctatgacagccgcaactttctcaagcgatggatctgttcttgcggttgcagctgagaatgtcgtcacattgtgggatcctgataataacacacttgttggtgtgattgcagaggcactatcggtattgtattattcctcagcgtggacttttgccattctgttcagattaatagtttgatatgtgtatctcatttcaatttgcagcccatcacaaaactttcgttcattgggacatcaccatttttgatgtctctatctcagagctccaaaccacaggttgccatgtggaatgttccaaatctttccatgcaatggtcttacagcctctttgcagaaggtacaaaattatctcgttgaaatgtatcttatgattttattacatgagttggttcagattgcatgtctagttattcatcttcatgatgactattaagatttaatcttaccagcttgaagagctgccaaatgatagttctaataattcaattaccctatacagatgcagtcgtctagatccaattgttctgtacgttcatgatatagaattaagtaggcaaactatagctaatagtctagtacagaacttaggtttgacctttgtgcgaacatttcgaaattctatcaaagaagttgggtttgtgaaaacaaactgctgatatctccttggataagtccgcagaaaaatgcatctgatataattctcattttatatatgtacttttgacagctgcgtgttgctcgtcaagtagaagtgagtttgcagttcttgctcttctaagctgtcctgatggagaaacactggcagagcaagatggggtgatactacttttcgatgcagaaaatccaaagcctgtttcttcctggtcagtaaagaaggtatgtttggctgagttgttatactctgaacagtccatagagcacattatatattttctgggactaaattttctggttagtgattgtaggcagtgcgcattgttagctacttattgctttggttctcaagtgaaatgtttatattttgtttctttcctctgcttgtgtcaatctgttgaatgcatcagtggcccattaatgtattacaagaattaatttcacttttcttttgtaggcaaggggaggcagcgttgcttttttgaagggtgattcctctttggatgcaaacagaaaagacaggatagatggagaggcatcatcgctggtttatgtcaacggttctcatgagtatgttatatttgatccccgaagcaatgaagaattgcatattggcaagagtgcacacaaaaatattcaaactgaggagcctggtgagttatggtttgctgcatttattctaatcagcttctgtatacttgtatttttcattgtgttaacctgctcttctctacggctatatttgctggtggcaagattatatagtactccctccgttttaaaatgtttgacaccgttgactttttagtatgtgtttgaccatttgtcttattcaaaaaatttaagtaattatttattcttttcatatcatttgattcattgttaaatatactttcatgtacacatatagttttacatatttcacaaatttttttgaataagacgaacggtcaaacatgtaataaaaagtcaacagtgtcaaacattttgaaacggagggagtatatgaacatcatatcccaacattttctcatgctaaatgttttacgctccagaaaccattctcttttttaatgctagccttccagaaaccctttctgaatattgttgcattgtgcctggcaaaaccatttatttgcccctttttcttttgtactctaaaacatgttgaaaaaggctctgaagctcctttttgttattccaggaccaattggttatgcttctatttttggagaacttccgaaactggagtcaaagaaagatgttccagaaattctatttataccgtcagagagaccttgggagactatattcagtggatcaactcatgttcttccgcctctcacaaagttatgtcctgcattcttggcatcattgcttgagaagagaccagttgcaaatgagtgagaaagtgccgaagttttgtcccgtcatacaatgcaacaaggaaccctgctagttacaaatggcattgcacatgaaatccttatgactagtgctgcccgaagctcgtccaatactgctgaagctggttgtgggcattgattatctgtcagctcagctcacaagagaacacatgcgatgatggctacagcaacgctgttgggtgaatgagccaccctacctctttttgtaggtgatatctagtgatctatcttcagatcctagcaaattttgtttccataggctaatctgtaattctgatagcaaaaactagctctttttggtgaaaatgtaacgcgctaagatatccagtaacacggtgagtgaatgatgctgttttactgactctgaatgaagtgtgtgttgatctggtaaactgaaaactcgatgcttctttcagagtttcagttgtctgttgcttgcatacatgatggaatacttttttcttctagaactctataacaaccaggc</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0609800, RefSeq:Os12g0609800