Os12g0623500

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Revision as of 10:37, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0623500| Description = Similar to Cationic amino acid transporter-like protein| Version = NM_001073841.1 GI:115489643 GeneID:4352828| Lengt...")
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Gene Name

Os12g0623500

Description

Similar to Cationic amino acid transporter-like protein

Version

NM_001073841.1 GI:115489643 GeneID:4352828

Length

4883 bp

Definition

Oryza sativa Japonica Group Os12g0623500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:26847659..26852541

Sequence Coding Region

26848065..26848227,26848324..26848399,26848498..26848610,26848703..26848808,26848896..26849130
,26849310..26849468,26849946..26850012,26850100..26850272,26850367..26850463
,26850545..26850663,26850755..26850895,26850995..26851079,26851182..26851383
,26852169..26852298

Expression

GEO Profiles:Os12g0623500

Genome Context

<gbrowseImage1> name=NC_008405:26847659..26852541 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:26847659..26852541 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggctcgaggaaggcggcgcgatgagggcgctgatgcggcggaagcaggtggactccgaccgggtccgcgccgccggcggccaccagctcgccaaggagctctccgttacgcagctcgtcgcgattggtgttggttcaacaattggagctggagtatatgttcttgtgggaacagttgctcgggagcatgctgggccggcattgacactttcatttctgatagctggagtggcagctgcactctcagctttctgttatgcagagcttgctagtcgctgcccttctgcaggaagtgcctaccattattcgtacatctgcgttggcgaaggagttgcatggctgattggttgggcattgatactggaatacaccatcggcggatcagctgttgcccgtggcatttctcccaatctggctttattttttggaggacaggatagtctaccatggtttttagcacgccatgagcttccatggtttgatgttgttgtcgatccttgtgcggctttcctggttctcgttgtcaccgccttgctatgcaaggggataaaagagagctcatttgtacaaggagttgtgacagtcctaaattgcttcgtgatgctatttgttattatagccggcagttacattggcttccaaacaggatgggtcggctataaggtggctggcgggtttttcccttatggggcgaacggaatgcttgctgggtcagcaactgttttctttgcctacataggctttgattcagttgctagcactgccgaggaggtgaaaaatccccaacgagatctgccactgggaataggaacagcattgtcagtttgctgttccttatacatgttggtttcagttgttatcgttggtctggtaccatatttcgctatggacccagatacccctatatcatcagcctttgcaagacatgggatgcactgggccatgtaccttgttacaactggtgctgttcttgctctttgctcaaccttgatgggatcgattctgccacagccaagaatattgatggccatggcacgcgatgggcttttgccatccttcttctctgatgtcaaccagcggacacaagttcctgtcaagagcacaattgttactggcatatgtgcagcttgtctggccttcttcatggatgtgtcacaactggcaggaatggtcagtgtgggcacactccttgcattcactatagttgctgtgtccatcttgatcctcagatatgctcctccagatgaggtacccctgccatcttctctggaagcgtcattccgtttgagccaagaatatgatgaggaaaaggttaggggtcctcctgtagatgcgaatcatgaacagttgtcatctgtggtagaatcaataaatgacacccttatcgagaagaagcaagacacaagtgtggaggagtcaaagcgtcggaaagcagctgtttgcagcatatcatctgtatgtgtaggggttgtggtcctcacaacttcagcttctttcacattcttgccattccttttgcgatgcttcttctgtgtttttggtggcctactcctcctagccggtctcggtgtcctctgctatatcgaccaagatgacgggaggcactcatttggtcactctggaggattcatctgccccttcgttccgttgttgccggtgatgtgcatcctcgtgaacacatacttgttagtaaacttgggtggagggacatggatgagagttggggtatggctggtaatgggagtattcgtgtacattttctatggccggacccacagctcattgaccgacgtggtgtatgttccggtggcgcaagcggaagagatatacggttcatcatcttcatcaggatttgtggcctag</cdnaseq>

Protein Sequence

<aaseq>MGLEEGGAMRALMRRKQVDSDRVRAAGGHQLAKELSVTQLVAIG VGSTIGAGVYVLVGTVAREHAGPALTLSFLIAGVAAALSAFCYAELASRCPSAGSAYH YSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLALFFGGQDSLPWFLARHELPW FDVVVDPCAAFLVLVVTALLCKGIKESSFVQGVVTVLNCFVMLFVIIAGSYIGFQTGW VGYKVAGGFFPYGANGMLAGSATVFFAYIGFDSVASTAEEVKNPQRDLPLGIGTALSV CCSLYMLVSVVIVGLVPYFAMDPDTPISSAFARHGMHWAMYLVTTGAVLALCSTLMGS ILPQPRILMAMARDGLLPSFFSDVNQRTQVPVKSTIVTGICAACLAFFMDVSQLAGMV SVGTLLAFTIVAVSILILRYAPPDEVPLPSSLEASFRLSQEYDEEKVRGPPVDANHEQ LSSVVESINDTLIEKKQDTSVEESKRRKAAVCSISSVCVGVVVLTTSASFTFLPFLLR CFFCVFGGLLLLAGLGVLCYIDQDDGRHSFGHSGGFICPFVPLLPVMCILVNTYLLVN LGGGTWMRVGVWLVMGVFVYIFYGRTHSSLTDVVYVPVAQAEEIYGSSSSSGFVA</aaseq>

Gene Sequence

<dnaseqindica>4315..4477#4143..4218#3932..4044#3734..3839#3412..3646#3074..3232#2530..2596#2270..2442#2079..2175#1879..1997#1647..1787#1463..1547#1159..1360#244..373#cttcctctcctcttcctcccaagaatccccatagctcaagcaaagggagagagcagcagcagcaagaggagcacgcggggagctagctagctccgccgccgccgacgagctccggcggctcgccgttatccgctcgctgatcgagccgtgtgcgggtgagaaagaaaaagaaaaaaaaaagatcgcgcctttttggcggcttcttggggtgtgaatccacggtttccccggggtaggatcttgatggggctcgaggaaggcggcgcgatgagggcgctgatgcggcggaagcaggtggactccgaccgggtccgcgccgccggcggccaccagctcgccaaggagctctccgttacgcagctcgtcgcgattggtccgaaccttttctcctgcttcctttgctttctctctctcttcctttcctgtgtgctgattggttaaatttgagggattattgcttgggaaaggtgtgatctctatgcttgaattattgtggtgtttgttttttgttttttttggtgcaggattctcggtagagtctgtttggattttcgttaattggttgtcatgtttgctgagtattacaagttatataaagttgtattgttttgatttggtttgtaaagtttgtgagtctttgattggccgggtgtcacatatattagtccttattaaacggctcaacttgtggattatgaactttttagatagagttttctggtagtctgcgtttcagacagacagttttgattcaaacacggaattcagatgcccggcatgatctgttacgatccgaaaatgtacctgtccaggttcatagctagaaatagcttccattttgggacagaggtagtacttggtaaatctccttaattatgggaatgatggttttatctcgatatggattcttgcaatgttttggagaattattgctttgcttctaccttaatcttgttgggtaagtgctgggtaggtgggccgtgggtagatgcctaaatattactttactaccttattgaagcaaataacatgcttgatgtctgctaaatttgaagtaaagtagttgaaaacgaattaccacaagtctaattatgtctttccacattttatacagcttctatgaatttattgttcatgaaacctttcatgatctatcaggtgttggttcaacaattggagctggagtatatgttcttgtgggaacagttgctcgggagcatgctgggccggcattgacactttcatttctgatagctggagtggcagctgcactctcagctttctgttatgcagagcttgctagtcgctgcccttctgcaggaagtgcctaccattattcgtacatctgcgttggcgaagggtaatttacctacacaatagagtaaacattgttcatgaatagccctctcttgctccattgattgggcgttcttaacattgtccaatgttatattttttttagagttgcatggctgattggttgggcattgatactggaatacaccatcggcggatcagctgttgcccgtggcatttctcccaatctggtaagtaggatttcccttgtaccactcttgttcctgcagcatgttgattaatggttgaatatttgcgtcccacctaacagtatatatttgtcttttcaggctttattttttggaggacaggatagtctaccatggtttttagcacgccatgagcttccatggtttgatgttgttgtcgatccttgtgcggctttcctggttctcgttgtcaccgccttgctatgcaaggggataaaagaggtctcacttgcttctctaattcagaagtatatttctctctttttcaagaagtaccacatgtgatatttactctctttaatttttgtcgcagagctcatttgtacaaggagttgtgacagtcctaaattgcttcgtgatgctatttgttattatagccggcagttacattggcttccaaacaggatgggtcggctataaggtggctggcgggtaatgcgaaacgttcttggtgctttggattttctctagctggtgagtggtgcacttaacctttttttttttttgcctcaggtttttcccttatggggcgaacggaatgcttgctgggtcagcaactgttttctttgcctacataggctttgattcagttgctagcactgccgaggaggtatggactgatcatatttccccaattaatatccatctgtttgctagatcagtgccagtattgataaatgggaattctttcatcctaacaacaggtgaaaaatccccaacgagatctgccactgggaataggaacagcattgtcagtttgctgttccttatacatgttggtttcagttgttatcgttggtctggtaccatatttcgctatggacccagatacccctatatcatcagcctttgcaagacatgggatgcactgggccatgtatggactttttttgtctcttttttttctactataattgatctactgtgcttccaactgaggcagttaaggggctatcttgtttaggtaccttgttacaactggtgctgttcttgctctttgctcaaccttgatgggatcgattctgccacaggtatacaacaatctccattaatatgtgatggaacttatatgattgcaaatttgcaattcataaatgatcatagtcaataccccctataaatgcaaccatttccccatatgtaactgatataggctgatgttttctgtttagtaaatttcatcacagtagaattttttttatatgagcaagtattaattttgtgatgtagtataactgtgtgctcatcagttaagttgaaccaatgttcaacagccccacagatttcgttgtttcttagtgctacatgactgttagtcgttaaatctggaatcttgataacattgtctgctctcataagtatctttctacagataacatgtcatgattagaggatcggaaattgatatgtgtattctctcatccaacatgtacatagtataaccataatcttaggctgagacagatatttgaatttagagaatttatggtttgctacttatctcacagccaagaatattgatggccatggcacgcgatgggcttttgccatccttcttctctgatgtcaaccagcggacacaagttcctgtcaagagcacaattgttactggcatatgtgcagcttgtctggccttcttcatggatgtgtcacaactggcaggaatggtgaggatctagaaactactgcaaagtagttttcgtttgagaattttgatgtactttggtacatgtgattgatgaccagacctcccttcagagaatattttagcatactctgcaattttatgtatctaaacaataccagaaattttagcctgagcaaaaagagttaattttggttgcaggtcagtgtgggcacactccttgcattcactatagttgctgtgtccatcttgatcctcagatatgctcctccagatgaggtacccctgccatcttctctggaagcgtcattccgtttgagccaagaatatgatgaggaaaaggttaggggtcctcctgtagatgcgaatcatgaacagttgtcatctgtggtagaatcaataaatgacacccttatcgagaagaagcaagacacaagtatgtacatttcttagtctatttgacattcctaagtagatgtacatttcttgagtttagtaatcaggttttctgtaaatccttcaggtgtggaggagtcaaagcgtcggaaagcagctgtttgcagcatatcatctgtatgtgtaggggttgtggtcctcacaacttcagcttctttcacattcttgccattgtaagtacaaattgtacacatttcatccccctaccatgtgcaaccaagatactcatcactctgatatatgcatcacttccatgccatgtcagccttttgcgatgcttcttctgtgtttttggtggcctactcctcctagccggtctcggtgtcctctgctatatcgaccaagatgacgggaggcactcatttggtcactctggaggtacttacataacaacacatctctgcaccttgtctacactagattctattgacgaaattacctaatatcacgacatcttggtgctgctcctgctgcaggattcatctgccccttcgttccgttgttgccggtgatgtgcatcctcgtgaacacatacttgttagtaaacttggggtaagtcatggtccattgctcacatgtacttatcttcagaactgtcatatgcttcaagcttgtactcaattctgaatcttgttaccttgcctccagtggagggacatggatgagagttggggtatggctggtaatgggagtattcgtgtacattttctatggccggacccacagctcattgaccgacgtggtgtatgttccggtggcgcaagcggaagagatatacggttcatcatcttcatcaggatttgtggcctaggtaaggagcagagtaccaaagccttgagtgatgaaatgctccaaaatcaattttaccacactttgaacaaacctggctgaaagggactcctgctgctgcgttctgtattgcatgccaggcatatgggtttgaagaattcaattcatatattgatttttaaattgtataaattatagtgtaaggtcatatttcgtataagcacctagttgaatgaatgtgaatattaaatagatatataatgaagataaggtctgtaatatgtgtaaattcactagagtatatcccagcttctgctgggaaaattcatatttccatgtaccttttgcactcgaggtcttcttgagtgggaaatgctgaagaccttggtcagatcctgcaacatgaataaagtcaacacattcccatt</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0623500, RefSeq:Os12g0623500