Os08g0117000
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Contents
Annotated Information
Function
Map-based cloning found PSS1 gene encoding a driver-like protein of class1. PSS1 is a new drive protein 1 family members. It has very important significance to the dynamics of rice male meiosis chromosome and male gamete formation and pollen sac cracking.
Expression
PSS1 widely expressed in various organs, which express the most in the ear. In addition PSS1 expression was significantly raised in anther development, to the male meiosis reached its peak.
Evolution
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Labs working on this gene
Jianmin Wan personal homepage: http://www.jipb.net/Web/Jianmin%20Wan.asp
References
1. Shirong Zhou;Yang Wang;Wanchang Li;Zhigang Zhao;Yulong Ren;Yong Wang;Suhai Gu;Qibing Lin;Dan Wang;Ling Jiang;Ning Su;Xin Zhang;Linglong Liu;Zhijun Cheng;Cailin Lei;Jiulin Wang;Xiuping Guo;Fuqing Wu;Hiroshi Ikehashi;Haiyang Wang;Jianmin Wan
Pollen Semi-Sterility1 Encodes a Kinesin-1–Like Protein Important for Male Meiosis, Anther Dehiscence, and Fertility in Rice The Plant Cell, 2011, 23(1): 111-129
2. Wanchang Li;Ling Jiang;Shirong Zhou;Chunming Wang;Linglong Liu;Liangming Chen;Hiroshi Ikehashi;Jianmin Wan
Fine mapping of pss1, a pollen semi-sterile gene in rice (Oryza sativa L.) Theoretical and Applied Genetics, 2007, 114(5): 939-946
Structured Information
| Gene Name |
Os08g0117000 |
|---|---|
| Description |
Kinesin, motor region domain containing protein |
| Version |
NM_001067393.2 GI:297607893 GeneID:4344521 |
| Length |
3468 bp |
| Definition |
Oryza sativa Japonica Group Os08g0117000, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 8:947841..951308 |
| Sequence Coding Region |
947841..947954,948312..948414,948551..948594,948834..948863,948962..949084 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008401:947841..951308 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008401:947841..951308 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtccaacgtgactgtatgtgtgcgattcagaccactgagccacaaagagaggaagactaatggtgacaaggtctgcttcaagagattggattcagaatcttttgttttcaaggatgagagggaagaagatgtcatattcagctttgacagggtgttttatgaagatgcagaacagtctgatgtctataacttccttgcagtgccaattgtcgcagatgccatcagtggaataaatgggactataattacttatggtcagactggagcaggaaagacatacagcatggaggggccgagcatcttgcattgcaataagcagaaaactggactagtccagagagttgtagatgagctttttcaatctctacaatcatcagaaagcatggctatgtggagtgtgaaattgtcgatggtggagatatatttggaaaaagtaagggatcttcttgacttgtccaaggacaacctacaaatcaaagagagtaaaactcaagggatctacatttctggagcaacagaagtatccatccagaatagttcagatgccttggagtgcctttctgaaggaattgccaacagagctgttggagaaacacttcaacaaggatcaacttctgatgagagggtgagaggagggaagattattcttgttgatttagctggttcagagaaggttgagaaaactggtgctgaaggacgagttcttgatgaggcaaagacaatcaacaaatctctctcagttctcgggaatgttgtcaatgctctaacaactggtatagacttttctggagagaataaacatcaacagaaggtaaaccgaatcatgtgccttatcgtgactctaagcttacgcgcattcttcaagatgcactggttggtgaaaagattttctcaggagtttctgaatcgtcgggtttgtctaaatgccactggtttttgcagggtggcaactcaagagcggcattactgtgctgttgttcccccagtgcttcaaatgcaccagaaacatctgtccaggacaaagctcataaagaccacacccaaatcaatctctcccgaagtggatagcatcaagaagcccatccctgattctcatggccaaaatgatctgcgtgaccggattctgaacaagttaaggttgagcctgaaggaggaagatgtggaccttctggaggaactgttcgtgcaggaaggcatcatcttcgaccccaactactccgtggcagacatcgactcagcctgccaagacgccgcgagccaggaggtctcactgctcacacaagctgtggaggaactgaaagaaaccgtcgaagaggtagtagtagcatcaagcctccatagtccatatactccctcccagtttcattgttcaggcagtaactgtagcaaacatgttttgcagctcaccgatgagaacgagaggttgaggggtgaactcgagctcgcgcaggaggctgccgccgccgccgctgctgctcgggctgacggcgcgctgcttggtttcgtgccggcggtcgccatcagctccctcctccgcccctttgggttcgttccagactga</cdnaseq> |
| Protein Sequence |
<aaseq>MSNVTVCVRFRPLSHKERKTNGDKVCFKRLDSESFVFKDEREED VIFSFDRVFYEDAEQSDVYNFLAVPIVADAISGINGTIITYGQTGAGKTYSMEGPSIL HCNKQKTGLVQRVVDELFQSLQSSESMAMWSVKLSMVEIYLEKVRDLLDLSKDNLQIK ESKTQGIYISGATEVSIQNSSDALECLSEGIANRAVGETLQQGSTSDERVRGGKIILV DLAGSEKVEKTGAEGRVLDEAKTINKSLSVLGNVVNALTTGIDFSGENKHQQKVNRIM CLIVTLSLRAFFKMHWLVKRFSQEFLNRRVCLNATGFCRVATQERHYCAVVPPVLQMH QKHLSRTKLIKTTPKSISPEVDSIKKPIPDSHGQNDLRDRILNKLRLSLKEEDVDLLE ELFVQEGIIFDPNYSVADIDSACQDAASQEVSLLTQAVEELKETVEEVVVASSLHSPY TPSQFHCSGSNCSKHVLQLTDENERLRGELELAQEAAAAAAAARADGALLGFVPAVAI SSLLRPFGFVPD</aaseq> |
| Gene Sequence |
<dnaseqindica>1..114#472..574#711..754#994..1023#1122..1244#1323..1348#1441..1522#1644..1685#1766..1799#1931..1958#2286..2472#2530..2724#2825..2950#3040..3468#atgtccaacgtgactgtatgtgtgcgattcagaccactgagccacaaagagaggaagactaatggtgacaaggtctgcttcaagagattggattcagaatcttttgttttcaaggtttggatactctttttcttctgccattattgtttcacagataaggcaggtatactgaatatgtaaatgaccagatgccttttctgtgagatgtgcaatttggttctagaataggactcttactcaagattactggatttgtttaatgttctcatatccatgagccattaaccttcttgagcatgtcacatagctggccctgtgtgcaaggatggaatggatagttaataaagagaggagcattcttatgtttatttagttatagatgcattctccatgctaaatccctgtgatattgttggcaagccttttgtgtttgctcatgttttgttgtttctgcaaataattttgagttaggatgagagggaagaagatgtcatattcagctttgacagggtgttttatgaagatgcagaacagtctgatgtctataacttccttgcagtgccaattgtcgcaggtttctttctgcctattcatcaagatagtcaaggcatctgcttattgcaatagtctctagttttgtcttgactgaattctcttatagtcatgaggtgccatgctttgtaccaactgtctaaattgcttggacgcagatgccatcagtggaataaatgggactataattacttatggtcaggtatgtattgctgcaaagtgcaaacgccttgttccctaactagacagttgtacacaaatgtttgatgcacagcttgcataagtaacttgcttattttgttgctactacattaccatcctcaaccctaaaatttacactgaacagtcaccatttgcagtgcacctaatacgctgttactatgtctgacatgagctacccatgtcaacactgacattttatttaacttttcctatgtgaagactggagcaggaaagacatacagcatggaggtaaagtgtacattgctgggattaatttaagggatgatgactgactgcatcacttcagctttgacttgtgtttttgtttaatttggatgttggcacaggggccgagcatcttgcattgcaataagcagaaaactggactagtccagagagttgtagatgagctttttcaatctctacaatcatcagaaagcatggctatgtggagtgtgaaattgtcgatggtaaaaattccagcctcatgttctgaatttgaacccacatcactaaatctttactcacattgatataccacttctcaggtggagatatatttggaaaaagtaaggtcagtgttgttgagaatattttcttatgcttccgctgtacagattcatatgttggaaatagagtatcaaactttattttgtcatacctcagggatcttcttgacttgtccaaggacaacctacaaatcaaagagagtaaaactcaagggatctacatttctggagcaacagaagtaagagagaagtgcttaaattgtgtccttacgttttgtttttcatttgatattctgaaacaagtatataattccattttatttttccttgatggcttgtgacatttcatcatctctgtaggtatccatccagaatagttcagatgccttggagtgcctttctgtaagttccttgtgtttttcttggaatgcctctctgtgattagataccaattagtttttgtttgtttctttaaattacaggaaggaattgccaacagagctgttggagaaacacgtatcctctatttactattttactgcttctagaacagctgtaaatattaacactatgcattttatcgtccttaatgtacatagaaatgaacctggctagtagtagaagtcactgcttatacattttttcagttcaacaaggatcaacttctgatgagaggtatgcttaatgaatcataaacatcagcaatcagtagttcagtgcaacattgcttcccgtatgtggataggtgttccttattccctttttcatattggttgcaactaattatatataaccttaaatttggtgatgcccattcctttgtgctatagactgatttagtgatttgatatccaaatgctggatttcttttggctcaaattgttaaaatctggttattcaaggaaaattgcagttacctgtattttaagtaaactgccatcctgaataaatgatgctagtctgagcaggacgtgtttctttttctctaaataaaactttcagggtgagaggagggaagattattcttgttgatttagctggttcagagaaggttgagaaaactggtgctgaaggacgagttcttgatgaggcaaagacaatcaacaaatctctctcagttctcgggaatgttgtcaatgctctaacaactggtatagacttttctggagagaataaacatcaacagaaggtcaccctcacgatttatgccttgctatatttacttgtcttatcttttcatcttcaggtaaaccgaatcatgtgccttatcgtgactctaagcttacgcgcattcttcaagatgcactggttggtgaaaagattttctcaggagtttctgaatcgtcgggtttgtctaaatgccactggtttttgcagggtggcaactcaagagcggcattactgtgctgttgttcccccagtgcttcaaatgcaccagaaagtttgtctactgttcgtttcggaacaaggcatatctcttgaacaatgcatgctggagtattacatttctacctctgcatattgtcctgattctatggcagcatctgtccaggacaaagctcataaagaccacacccaaatcaatctctcccgaagtggatagcatcaagaagcccatccctgattctcatggccaaaatgatctgcgtgaccggattctgaacaaggtttgtatagcaactaaccagagatggccaattcaggtccaatttttgatcacttgatacctcactgaagatcaatcatttttcctcagttaaggttgagcctgaaggaggaagatgtggaccttctggaggaactgttcgtgcaggaaggcatcatcttcgaccccaactactccgtggcagacatcgactcagcctgccaagacgccgcgagccaggaggtctcactgctcacacaagctgtggaggaactgaaagaaaccgtcgaagaggtagtagtagcatcaagcctccatagtccatatactccctcccagtttcattgttcaggcagtaactgtagcaaacatgttttgcagctcaccgatgagaacgagaggttgaggggtgaactcgagctcgcgcaggaggctgccgccgccgccgctgctgctcgggctgacggcgcgctgcttggtttcgtgccggcggtcgccatcagctccctcctccgcccctttgggttcgttccagactga</dnaseqindica> |
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