BGIOSGA000280

From RiceWiki
Revision as of 10:02, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA000280| Description = Leucine zipper factor-likeOs01g0911000| Definition = Oryza sativa Indica Group BGIOSGA000280, complete gene.| tag = P...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA000280

Description

Leucine zipper factor-likeOs01g0911000

Definition

Oryza sativa Indica Group BGIOSGA000280, complete gene.

LocusTag

P0470A12.8

Ensembl Transcript ID

BGIOSGA000280-TA

Ensembl Protein ID

BGIOSGA000280-PA

Length

2085

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:43374248..43376332

Sequence Coding Region

43376165..43376332,43375887..43376066,43375598..43375789,43374798..43374965,43374539..43374693
,43374248..43374392

Genome Context

<gbrowseImage1> name=IndicaChromosome01:43374248..43376332 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:43374248..43376332 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGACAGCGGCGGCACTGCCAGTCCTGCCGGCGTCGCCGGCGACGGCGCTGGTGGCCGGGGTTCGGTCTTCCGCGGAGATGACGCGCCGAAGCTGCTCGCCGCGTTGAAGGAGATGAAAGAAGGGCTCGACCTCGTCACCGGCAAGGTCAAGGCGCTCACCCGCAAGGTCAAGAAGAACCAGCTGCCGACGGCGGATGGGATTGGGTACCTGGAGGCAAAGCACCACCTGCTGCTGAGCTACTGCCAGGACATCGTCTACTATCTCCTCCGCAAGGCGAAGGGGCTCTCGGTGGAAGGTCACCCCGTCGTGCGGAGCCTTGTCGAGATCAGGCTGTTCTTGGAGAAGATTCGTCCCATAGACAAGAAGATGGAGTACCAAATCCAGAAGCTCACCAACGCCGCGGATAGCGGAGCTGCCCAGGAGAAGGTGCTAAATGCAGAAGCAAAGAGTAAGGATCAGCCTAAGGATGATGAAGACCTACTGAAGTATCGGCCGAACCCTGATATGATGGACACTAAGATCGATCCTGCGGGGCAGGACAACGATGGCATCTATCGTCCACCAAAATTTATTGCTGCTACCATGGATGATGAGGATAAGCGCCATAAACAAGCTTCAAGGAAAGACAAAGCATTAGTGCGAATGGCTACAGAAAGCTCTTACTTCAAAGAGATTATTGATGACGCTGCTGATAGACCTGAAGAGTTAAAGGAAACAGCAGGTGATGAAAGCAGGGAATTTACAAGGTATATGCGGCAGAGAGAGTTGCAAGAGAAACAAGAAGAGGAGCTGTTCACTCGAGCTCCGCTGACAAAACGTGATAAGCAGACGGAGAAGCGGATGAGAAAAGAGCTTCACGGGCTACGGGGCCTAACAGATGGATTCGATCTTGGAATTAACATGTTCGTCGATGGAGACAAGGATAATGATGTCGGTTCAACCGAACCCCATTTCAAGAGCGGAGGTCGGAGAAAACACCATAAAGGCAAGAGGAAGAGGCATTAG</cdnaseq>

Protein Sequence

<aaseq>MDSGGTASPAGVAGDGAGGRGSVFRGDDAPKLLAALKEMKEGLDLVTGKVKALTRKVKKNQLPTADGIGYLEAKHHLLLSYCQDIVYYLLRKAKGLSVEGHPVVRSLVEIRLFLEKIRPIDKKMEYQIQKLTNAADSGAAQEKVLNAEAKSKDQPKDDEDLLKYRPNPDMMDTKIDPAGQDNDGIYRPPKFIAATMDDEDKRHKQASRKDKALVRMATESSYFKEIIDDAADRPEELKETAGDESREFTRYMRQRELQEKQEEELFTRAPLTKRDKQTEKRMRKELHGLRGLTDGFDLGINMFVDGDKDNDVGSTEPHFKSGGRRKHHKGKRKRH</aaseq>

Gene Sequence

<dnaseqindica>1..168#267..446#544..735#1368..1535#1640..1794#1941..2085#ATGGACAGCGGCGGCACTGCCAGTCCTGCCGGCGTCGCCGGCGACGGCGCTGGTGGCCGGGGTTCGGTCTTCCGCGGAGATGACGCGCCGAAGCTGCTCGCCGCGTTGAAGGAGATGAAAGAAGGGCTCGACCTCGTCACCGGCAAGGTCAAGGCGCTCACCCGCAAGGTACTCCCACTTTCCCCTCCTCCTCGTGAGTTGCCCCATCTCTCCCGCTTCTTGGCAAGATGACGGCGAGCTTCATTCCGCGTTTGATGTGTGGGTAGGTCAAGAAGAACCAGCTGCCGACGGCGGATGGGATTGGGTACCTGGAGGCAAAGCACCACCTGCTGCTGAGCTACTGCCAGGACATCGTCTACTATCTCCTCCGCAAGGCGAAGGGGCTCTCGGTGGAAGGTCACCCCGTCGTGCGGAGCCTTGTCGAGATCAGGCTGTTCTTGGAGAAGGTGTGCCAGAGCCCTCCTGTACTGATTTTTAAGTTTCATGGCTCAATTTTTGTTGGCTAACATTGGAGGGTGCTGTGTTGAATTGGATGGATTTTAGATTCGTCCCATAGACAAGAAGATGGAGTACCAAATCCAGAAGCTCACCAACGCCGCGGATAGCGGAGCTGCCCAGGAGAAGGTGCTAAATGCAGAAGCAAAGAGTAAGGATCAGCCTAAGGATGATGAAGACCTACTGAAGTATCGGCCGAACCCTGATATGATGGACACTAAGATCGATCCTGCGGGGCAGGTTGTTCATCTCCCCATCCACTCCACAAACAATTTCACTGTTTATTTTTTAATTTTCACTTGCTAAGTGGTCAGATTTGTTCTTGTGTGCACCTGAAATTACCTACCTTCTCGAAATTGTAGAAATTGTATTCGTTGATTTTTTTTCTTTTTTTGGATATCATTAAATCAAACTTGACATCTAGCTGGTACTTTAGCCCAACGATGAACCAATAGTTCTTAAGTAATTGTCAGCTAGGCTAAGCCTGGCCATGCTTCTTTCGTGTGTTTTTGTAGTATAGTCCTCGTCTGGAATTAAAATTAACTACTATTAGTCCACACCTTGGTAGAATTATGATATATGGATACTTATGATGTAGTATTTCTTGACTTAATTTATAAAATGGTGATTTATTTATCTTGTTTTTTATATCAGCGTTGGCTTAATTCTAATGCTTGCTTCTATGGACATACTAATCGCAGTTAAATATTTTCTTATTTCTTTCATATTTGGAATTACTTGAGAATATATGAGTGCACTATATCCGTTGACACTGAACTGTTTATCTGTTTGTTAGAGCATTATTGATCATTTTTTAGTTAGTTTGACATGTTCATACAATTATTTTTGCTGATGTACATCCCTGACTTCAGGACAACGATGGCATCTATCGTCCACCAAAATTTATTGCTGCTACCATGGATGATGAGGATAAGCGCCATAAACAAGCTTCAAGGAAAGACAAAGCATTAGTGCGAATGGCTACAGAAAGCTCTTACTTCAAAGAGATTATTGATGACGCTGCTGATAGACCTGAAGAGGTTTGCCAGTTATTTCATTTGATGCACTAGCAATTTGATTAGATGTATAGTTATATGATTAGTGTTCTATGTCCACCTGAATAATCATCTGTATTATTTTGCAGTTAAAGGAAACAGCAGGTGATGAAAGCAGGGAATTTACAAGGTATATGCGGCAGAGAGAGTTGCAAGAGAAACAAGAAGAGGAGCTGTTCACTCGAGCTCCGCTGACAAAACGTGATAAGCAGACGGAGAAGCGGATGAGAAAAGAGCTTCACGGGTATGTGGAGCTGATCTTCTGCTACTATCCATTATAAAATACGTAAAATTATGTGCAAGTATAGCTTAAAGCTGAGGTTGTCCGTTGGGATTTCCAATATACCCAACCTGTGTATGTAACTGATCTTATTTTGAAAAACAAAACAGGCTACGGGGCCTAACAGATGGATTCGATCTTGGAATTAACATGTTCGTCGATGGAGACAAGGATAATGATGTCGGTTCAACCGAACCCCATTTCAAGAGCGGAGGTCGGAGAAAACACCATAAAGGCAAGAGGAAGAGGCATTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA000280