BGIOSGA001085

From RiceWiki
Revision as of 10:15, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA001085| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA001085, complete gene.| tag = P0684E0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA001085

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA001085, complete gene.

LocusTag

P0684E06.7

Ensembl Transcript ID

BGIOSGA001085-TA

Ensembl Protein ID

BGIOSGA001085-PA

Length

4556

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:30000616..30005171

Sequence Coding Region

30005112..30005171,30004825..30004869,30004637..30004729,30004474..30004557,30003853..30003980
,30003695..30003740,30003556..30003604,30003183..30003340,30002584..30002661
,30002335..30002460,30002022..30002233,30000616..30000661

Genome Context

<gbrowseImage1> name=IndicaChromosome01:30000616..30005171 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:30000616..30005171 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGGAAATGACGAAGCTGTAGTTACTCAGAAGATGGGGAAAGCACCATCGCCCCCTAAGGATCATCCAGCCCTTAGTCCATACCTTGATTGGTCAAATATGCAGGCATATTACGGCCCAGGGATCTTGCCACCAACATTTTTTAGCCCTGGAATAGCCGCTGGTCATACCCCTCCTCCATTTATCTGGGGTCCTCAGCCTCTGGTGCCATCCGCTTTTGGGAAGCCATATGCCGCAATTTATCCTCCTGGTGGAGCTTTTTCACATCCGTTCATGCCCCTAATGGTGAGCCCATTGAGCATGGAGCCAGCAAAGTCTGTCAACAGCAAGGATAACTGTTCAAATAAGAAAATGAAGGAAATTGATGGTGCGGCTATGTCAACTGGCAGTGGCAACAGTGAAAAAACAAGTGGAGATTGCAGCTTAGAAGGATTCAGTGATGGAAACAACCAGAAGGCAAGTGGAACTCCCAAGAAAAGGAGCATAGATGATAGGCCTAAATCAGGCGTGGAAACTGGTGGAGCTTTAACACCTAATGATAGACCTAGCGAACAAGCAGCTTTGCCAAATCTATGCATTCCGGTTACAGCAATCAAACCAGACGTGAGCACTGCTAGTGACTTCAGAGTTATTGCCACCCCAGTAACTGAAGTGCCAACTAAGGATGATAAGGAATCGAAGCGCGAGAGAAGGAAGCAATCAAACAGGGAGTCTGCTCGGAGGTCAAGGTTGAGGAAGCAGGCCGAGACTGAGGAACTGGCTAGAAAAGTTGAGCTATTGACTGCGGAGAACACATCCCTTAGACGTGAAATAAGCAGGCTAACGGAAAGCTCCAAGAAACTTAGATTAGAGAATTCTGCTCTAATGGAGAAACTAACGGAAACCGGGCCTGATGAAGCACAAGAAGTGCCTCCAGTCAAAACAAAAGCACAGCAAGCTCGAGGCGTCGAAAATTTCCTGTCAATGATAGACAAGACTGGCACGCCGAGAAGCAGCGGGCACATGGATCATGCCATTGCCACGCCCAAGCTTCGTCAACTCCTGGGCTCTGGTCTGGCGACTGATGCTGTAGCCGCAAGATTATTAGAGGCATCTAAGGGTAGTGGGTCTTTAGCCACTCAATAA</cdnaseq>

Protein Sequence

<aaseq>MGNDEAVVTQKMGKAPSPPKDHPALSPYLDWSNMQAYYGPGILPPTFFSPGIAAGHTPPPFIWGPQPLVPSAFGKPYAAIYPPGGAFSHPFMPLMVSPLSMEPAKSVNSKDNCSNKKMKEIDGAAMSTGSGNSEKTSGDCSLEGFSDGNNQKASGTPKKRSIDDRPKSGVETGGALTPNDRPSEQAALPNLCIPVTAIKPDVSTASDFRVIATPVTEVPTKDDKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLENSALMEKLTETGPDEAQEVPPVKTKAQQARGVENFLSMIDKTGTPRSSGHMDHAIATPKLRQLLGSGLATDAVAARLLEASKGSGSLATQ</aaseq>

Gene Sequence

<dnaseqindica>1..60#303..347#443..535#615..698#1192..1319#1432..1477#1568..1616#1832..1989#2511..2588#2712..2837#2939..3150#4511..4556#ATGGGAAATGACGAAGCTGTAGTTACTCAGAAGATGGGGAAAGCACCATCGCCCCCTAAGGTAAACGCATATAAGTAGATAACCAAGGCCAAATATGGGCACAGACAACATTGCACGAGCAAGATGTCAAATTGATTATTGGCATTTCTTCTTTTATTTGACAACATAAATCCGCTTTGAGGTTTTAGATGTGCTAGGGCTGCATCAAACAGCTGCGAAGCATGATTTTGTCAATTAGCCACATTATTGACAAGGGGTGGAATCCTTAAAGGTGCCTAAGTAGCAACTGTATTACTTTGCAGGATCATCCAGCCCTTAGTCCATACCTTGATTGGTCAAATATGCAGGTTAGGTGTCTGACAATCTATATTTTCCTGATAACTGAAGTTTGGATTTTCCTTTGAACTGAGTAACTAAATTTAAGGTATCATAATCAACACAGGCATATTACGGCCCAGGGATCTTGCCACCAACATTTTTTAGCCCTGGAATAGCCGCTGGTCATACCCCTCCTCCATTTATCTGGGGTCCTCAGGTTTTTGACTTTACTCTCCATGTATCAGGTGTCATTCTTATCTTTAAGAGTTCTAAGTTATTTCCCTGTGCCTCTACAGCCTCTGGTGCCATCCGCTTTTGGGAAGCCATATGCCGCAATTTATCCTCCTGGTGGAGCTTTTTCACATCCGTTCATGCCCCTAGTAAGCATTTCATTTTGTTCACCTATCTATTTTTCAGAACATTGCATTTAACTAAACATGGAAGGCACCATGGATTTGAGTCAACTATCACGCTTTGGAATTAAAGCGATATCCAATTTGTTAAAATGCTTGCATAAAGCCATGTTAACATGGAAACTTCTCTATGAGCAGAACTAACACGAATGATTTCTGCCGTTCGAAGTATTCATGATATGTAGTTGGAACTTGGAAAACCTATCCTTGCAGACGAATTATCTCTACATGAAAATAAATTCATTCATATATTGCCATTTTTTCTGTAGAAGGAAGCTGGATTTTTTTTTTTCTTCTGTGGAAGTATATATGTATTTTTAAATCATTTGTTCAATTGTTCTTTTCTTTAATGTCTTTCTTGCTTCACTTGTGTGAACGTTCTGTGCTGAATTGCTAATCGTTTTGCTAGTATCTTAATTATGCTTCTGTTATTGATTGTTTATCTTATATTTTTATCAAGATGGTGAGCCCATTGAGCATGGAGCCAGCAAAGTCTGTCAACAGCAAGGATAACTGTTCAAATAAGAAAATGAAGGAAATTGATGGTGCGGCTATGTCAACTGGCAGTGGCAACAGTGAAAAAACAAGGTGATACAGGATTTTACAAAATGAAAACGATAACCAGATTGATAGTTCAACTTATATACAACTATTATGAGTGACAAACTGATTTCATGTGCATCTGATGCTGCCAATGCAGTGGAGATTGCAGCTTAGAAGGATTCAGTGATGGAAACAACCAGAAGGTATTGTTCTGTAGTTATTTAATGCCATTGAAGATGTTCTGAGCCAGCAAGCTTATACTTAACATGCTGATATATTTCATCATTATTCAGGCAAGTGGAACTCCCAAGAAAAGGAGCATAGATGATAGGCCTAAATCAGGTACTCAATCTTGGTATCATCTGGTACTTGATTTTTATAATATCCAGTTCAATGACTCATCGTGAATTTTGCGGCATTTCTTGTTATTTCTCTAATTGATAACTGAAACATAATATAATCCTCTGTTTAAGTTTTCAGATGATAAGAAGGCCATATATTCTGAGCACTAAGCAACACTAAGAGGTGATTTGGTTTTTGTTTTTCCTTTTCTCCAGGCGTGGAAACTGGTGGAGCTTTAACACCTAATGATAGACCTAGCGAACAAGCAGCTTTGCCAAATCTATGCATTCCGGTTACAGCAATCAAACCAGACGTGAGCACTGCTAGTGACTTCAGAGTTATTGCCACCCCAGTAACTGAAGTGCCAACTAAGGTATGCCAGTTGCAGTTTTTTTTCTTGTTAAAGTGCCAGCAAATTATCATTTAGAAAAGGCGCCACTAACTTCGTGGAGTGAACCATGATCCATACTTGGACGAAGCAATCAAATTTCTTAATGTTTCCACTACCACGACTTCAGTAGAACATCCTTTTTTTTTTGAGAATACAACATCCCTTATTTATTACTGCTGTTATTTTTTGGGATTAATTCTCGAGTCGCTAGTATGGTTTTTCTAAATAGATTGCTGGAGCTCTTTGCATTCTTTTTCTTTTAAAAAAGAACTACACATTCATTCCAGAGAGAAACAGAACAAGACCCGTCCCAGAAGGACACCCTGAGATAGCAACAAAACACCTCACCAAACACCACTGTCAGGACACCTAAATGCAAAGTACCTAGATACTCAATAAAAAATGAGATTCACTCTTGAGATCAGGAATTTTCAGCTTTCGATTCATGGGATCGTTTCTTCTTGAATTAAACTATAGACCTATAATCCTTAATAAATTGTCAGGATGATAAGGAATCGAAGCGCGAGAGAAGGAAGCAATCAAACAGGGAGTCTGCTCGGAGGTCAAGGTTGAGGAAGCAGGTATAATAAGATGCTTAGCTAGTTTTAACTTGTAATGTTTTGTGGTATCCCCTTCAGTATTCCATACTCTAGTAGAAATTTAAACCATACTTGTACAATAATGATATTCTTTCATTCTAACAGGCCGAGACTGAGGAACTGGCTAGAAAAGTTGAGCTATTGACTGCGGAGAACACATCCCTTAGACGTGAAATAAGCAGGCTAACGGAAAGCTCCAAGAAACTTAGATTAGAGAATTCTGCTCTAATGGTAAACATCTTTTCTAACGATATGATCATTGGAGTATTGGAGCTATTTTCATTGAGCACTAGTCCTTTTTTTTCTTCTCTCAAATGCGCCTTGTTTAACAGGAGAAACTAACGGAAACCGGGCCTGATGAAGCACAAGAAGTGCCTCCAGTCAAAACAAAAGCACAGCAAGCTCGAGGCGTCGAAAATTTCCTGTCAATGATAGACAAGACTGGCACGCCGAGAAGCAGCGGGCACATGGATCATGCCATTGCCACGCCCAAGCTTCGTCAACTCCTGGGCTCTGGTCTGGCGACTGATGCTGTAGCCGCAAGGTAATCTTAACGACTTGACCCTCCCGCCGTTCGTGCTCAAACGCAGCATGTGGCCTGGTGAATTTTATAAGCTCAACCTGCCCGCACGATTAACATCGAAGTATTAGGTACGATTTCGTCACTGTATTCGCCCGTGTAAATTACTAGTAGGGGNCTTTTAGACGAGCATTCCAAGCCGCTCCACCGGGATATGAATGCCCCCGCTGTGCCGTCAGTTCTTCCCTGTAGTTTTTACTCTACTCTCGTAGATCTGTAACATCAGTGCTGGCTCGCGTTGTTCATATCAAACTGATCTCTGTAAGTGCTGTAACACTGACAGAAAGCCTTCTAACTTTGATCTTTTACCTTTACCGTGCTTTTGGATGATCCATTTTTCTCTCCTACGGGTGTACGTCTTCTTTTTCTTGGTTAGTTCGACACATAACATGTAGCCGATGCGATCAACACCGGTGGTTGTTCGCTTCTGTCCTTGGCGTACGACATGTTCTTTACGGCTTTCTGTTGATACGGCTCTCTATTGATGATCGATAAGATCACACGGTTGCATCAGCGATGATCACTATGCGGTGGCCGGTGGGCAATTACTCGCCGGCGTCCTATGCCATTCGTCTTGTCGACGGAAGCGCTGTACTCCGTTGAAAGCGAGAACAGAGGCAAGGGAATCTCCGGTTGCTGCTCCTGCACCTCCCAAACATCCGCCATGCTGTTGCCATGACTATGGGCATGTGTGAGACAACACTGTGACAGCAAATTCAGGCTTGAAACAACTTGGGCATTCTAACTACTCCTACGTTTAAAACGGTATCAGTATGGCAGAGTGACTCAAGTGCCATGGTTTGTGCCAGCAAATTCAGGCTTGAGAGAGAGGTGCGTGAATTTCGTGATGGTTTTGGTGAGGTCGTACTTGTACGGTGCTGATGAGCTGATCTGACTGCGTGGTTGGATTGACGCATGGTCCAGTGCTGTGCTGTTAGCTTGGGCCCTGCATGGTATTAGGCCGGCTTTCTTTTGACTCGACTAGCACCCGCGTGACCCTTGACTGAATTGGTAATATCGATGCATCCAATTGCTGCAAACGGGTCGGCCGCTAGCTCACCACCACGACCCAGAGTCCGAACATGCTAACCAATTTTCACCTGTCAAGGCCTCAAGGGCTCATGGCAATGGGCAAACAGGCAGGCGCACGCCACGTACGAGTGGAAAATTGTTAATACAGCTTTCATCTGTTAATACAGAAGTGATTAAAGCCCTATTTGTTTCAGTTTAAAATTATTGTAATCTAGATTATTAAATCAGATTACTCTAAATTGGATTATAATAAGCTGATATAAAATAAGTTACGAGTTGTTTGTTTCTCTAGATTATTAGAGGCATCTAAGGGTAGTGGGTCTTTAGCCACTCAATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA001085

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA001085&oldid=38809"