BGIOSGA001425

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Revision as of 10:20, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA001425| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA001425, complete gene.| tag = B1144D1...")
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Gene Name

BGIOSGA001425

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA001425, complete gene.

LocusTag

B1144D11.2

Ensembl Transcript ID

BGIOSGA001425-TA

Ensembl Protein ID

BGIOSGA001425-PA

Length

4949

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:23324065..23329013

Sequence Coding Region

23328471..23329013,23326769..23327191,23326010..23326129,23325567..23325761,23325444..23325483
,23325229..23325340,23325087..23325156,23324912..23324990,23324602..23324822
,23324065..23324463

Genome Context

<gbrowseImage1> name=IndicaChromosome01:23324065..23329013 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:23324065..23329013 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAGTGGGAGGATGATGGGGAGGAGGCGGCGGGCTCCGGCGGCCAGCTCGGCGGCGCACCGCTGTACGCGGTGGGGGACGAGGTCGAGGTGCGCATGGACGACCCCGGCTTCCACGGCGCCTTCTACGAGGCCACCGTCTCCGCGCGCCTCCCGTGCTCCGGCCGCTACGAGGTCATGTACTCCACGCTCGTCGAGGGGGGAGGAGGCCGCGGCCGCCGCGGCGGTGGCCCGCTCCGGGAGACAGTCGCCGCGTGCGACGTGCGGCCGAGGCCGCCGCCGCCGCCGCCGCCGCCGCTGGCGGAGGACGGGGCGGCGCCGGGGCGCGAGCTCAACGTGTTCGACATGGTGGAGGCGTACCACAGGGAAGGGTGGTGGCCGGGCGTGGTGTCCGCGGCATGGCCGGCTCGCGGGCGGAAGGCGGCGGCGGCGATGTACACCGTGTCGTTCCCGTCGTGCCGGGAAGAGGCGAAGCTCCCGGCCTCGCTCGTCCGGCGGCGGCGGGCGTTCGTGCGCGGGCGCTGGATGGACGCGCGCGACGTGGTTCCAAGGGTGCCGCAGTATGACGAAGGGAGCAATGTGGAAGTCATGTTGGATACAGGAAAGCACCGTGCAGCCTGGGTAACTGCTACTGTCATTAAGATGGTTAGCAGTAAAAACTATGTTGTTAGGCTTAAAAATAAGGAAGGCTCAGTTAACATCGTAGATTACTGCTATATTCGACCACAACCTACCTTTGACAGAAAGAAGTTTGAGTATGAACTGGAGCCCTCTGCAGAGGTTGAAGTGAATCTGGGTGGTGCCTGGTCGCTAGGCGTCATCTCAGATGTTGGAAGCTGTGGATATGGGGTAAGGCTAAAAGGACATGATAGCTCAGAGGAAGAGGACTACATGCTTGTGTTGCGTGCTTTACTCAGACCCTACTGCAAACAGGATGATCAGGAATTGATGCCTTGTACAGCAAAGGAATTTGCTTGTACAAGTTTGGATCTTCCATGTATCTCTGCACCTAAAGATGCTGTTGAAATCAAGGGCAAATCTAGTTATGTCGATGTAGTCGAAATCAGTGACAACTCTGGCTATGATGCTCATTTCAACAACAATGCTGGGCAGCTAATTCCTCTGCCAAGTTATCCGGTATTAGAGAAGTTGCCAGTTAAAGTGCTTCCTGAAATGAATGAAATGAAAGAAACAAATCATGCTCATTTACAAGCTGAGTTCTTGGCACCTGATGATTGTACAGCCGGAGACCAAAACTATGCTCTGCCTATAAAAGTTGAGGTGGAGAGCTGGGTCGCTGATATCCGCAAGAAAGAAGCAGCAATGCAGACAATTACTGATAGTGGTGAAGACAATTCAAGAAGGCCACGATCAGGAGATTCTGAGATACCAAATTCCAGTAAATTAGAACCATATTCATCTGAGCAACAAAGACATACGTTTCAATTTGTTTCTCGGAACAAACTGGAAGTGCCAGTGAGACATAAGAAGGCCCCTGATGCTCTGGAGATGAATACCAATTCGGTTGTCTTCTCTCCCAAGGAGCAAACACACTGTAATTTGGAGATCTTTAGTCCAAACTCCAAGAAGATCATTGATGCGTCACACTATGAAAGTTATGCGTCATTACAGCAGCATCCTTTGGGCCAATGTCAAGTTCCAAATTATTGGAGTGCTGCAGGGCAATCTTCATTTGTGCATCCGAGCATAACAATGAACCTATTCACAATATTGCCAGCACCTAACAGTCATCCAACTACTTTTGCCTCAAGCTTGTTGATGGGGCCTTGTGAGAAAATAGAGGACGAAGAAAACGTCTTTGAGGAGAAACTGAGGTGCCTCTCGGAATTGGAAGAGGACGGATTTGATGTTAGGGCCCTGAAGGAGCGGCTTGAAAACCTCGTGAGCATAAAGAATCACCAGACAGAACTCAAGAAGAAAAGAGCAAGATTGGATCAGTTCATGCTTGAGAGAGAGGTGGACAATGCCTCTGTAGAGCAAAGCCAGAAGCTGCTCGACATAATGATCAAGGAGCTTGAGCTGAAACTTTTAGAGTACCGAGAGAAGAAGGCATCACTCGTGGAGAAGAAAGCAGCGAACTGTTCGGAAATTGCAAAGCTCCAAGGCGACATGGATCAAATTGAGGAGTCATTCCTTTCTGCCGAGTATGATTTCCACACCACCGCTGCTGCGCCGTGGTAA</cdnaseq>

Protein Sequence

<aaseq>MEWEDDGEEAAGSGGQLGGAPLYAVGDEVEVRMDDPGFHGAFYEATVSARLPCSGRYEVMYSTLVEGGGGRGRRGGGPLRETVAACDVRPRPPPPPPPPLAEDGAAPGRELNVFDMVEAYHREGWWPGVVSAAWPARGRKAAAAMYTVSFPSCREEAKLPASLVRRRRAFVRGRWMDARDVVPRVPQYDEGSNVEVMLDTGKHRAAWVTATVIKMVSSKNYVVRLKNKEGSVNIVDYCYIRPQPTFDRKKFEYELEPSAEVEVNLGGAWSLGVISDVGSCGYGVRLKGHDSSEEEDYMLVLRALLRPYCKQDDQELMPCTAKEFACTSLDLPCISAPKDAVEIKGKSSYVDVVEISDNSGYDAHFNNNAGQLIPLPSYPVLEKLPVKVLPEMNEMKETNHAHLQAEFLAPDDCTAGDQNYALPIKVEVESWVADIRKKEAAMQTITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQRHTFQFVSRNKLEVPVRHKKAPDALEMNTNSVVFSPKEQTHCNLEIFSPNSKKIIDASHYESYASLQQHPLGQCQVPNYWSAAGQSSFVHPSITMNLFTILPAPNSHPTTFASSLLMGPCEKIEDEENVFEEKLRCLSELEEDGFDVRALKERLENLVSIKNHQTELKKKRARLDQFMLEREVDNASVEQSQKLLDIMIKELELKLLEYREKKASLVEKKAANCSEIAKLQGDMDQIEESFLSAEYDFHTTAAAPW</aaseq>

Gene Sequence

<dnaseqindica>1..543#1823..2245#2885..3004#3253..3447#3531..3570#3674..3785#3858..3927#4024..4102#4192..4412#4551..4949#ATGGAGTGGGAGGATGATGGGGAGGAGGCGGCGGGCTCCGGCGGCCAGCTCGGCGGCGCACCGCTGTACGCGGTGGGGGACGAGGTCGAGGTGCGCATGGACGACCCCGGCTTCCACGGCGCCTTCTACGAGGCCACCGTCTCCGCGCGCCTCCCGTGCTCCGGCCGCTACGAGGTCATGTACTCCACGCTCGTCGAGGGGGGAGGAGGCCGCGGCCGCCGCGGCGGTGGCCCGCTCCGGGAGACAGTCGCCGCGTGCGACGTGCGGCCGAGGCCGCCGCCGCCGCCGCCGCCGCCGCTGGCGGAGGACGGGGCGGCGCCGGGGCGCGAGCTCAACGTGTTCGACATGGTGGAGGCGTACCACAGGGAAGGGTGGTGGCCGGGCGTGGTGTCCGCGGCATGGCCGGCTCGCGGGCGGAAGGCGGCGGCGGCGATGTACACCGTGTCGTTCCCGTCGTGCCGGGAAGAGGCGAAGCTCCCGGCCTCGCTCGTCCGGCGGCGGCGGGCGTTCGTGCGCGGGCGCTGGATGGACGCGCGCGACGTGGTGAGTCAATTCTGCTGAACGGATTGTTGTACTCCGTATTTTCCCCCTTTTGTGCTGGTGGTGGACAGGAGAAACCCTCTTCGGTGCGTTATTCGTGGCTGGATTATTGAGGCGTAAACCTGACATTTGACATGGGATTTAATGCTCAATTGGACAAGATGGAATGTTCATAATTTTAATCGGTGGTGATGTCGCATGTACATGTTAGAGGAACTTTAGGTAGTGTTTGGTAATTTGTTATTTCTAACAAAAAAACCACTGAAGATATAGAAGAACTTCGTTTTTTTTTTTTACCTGTAGGTGAGTGGTGACTTGAACTGATGACCTCAACGACAACAATCAATGAATTCATGTGCTGTTCTAACACTAGGCGAGACTAGGTGCTTTGTATTGTAGATATGAGTGTCCCCTCTAGTTTGCTACTAGTTCAGAATCTGAGATATCAAGATAAGACCAAGTGATGACAAATGCCATACTTGTTTGACCTAATTATCGTGTGCTGAGTTTCTATTTACATGTGGGGGATTTTATTGAATTCAACAAAGCAGTAAGTCATTCTTCGTCCACTGGTTAGTATATGTATGCTAAGCTATTGGTTGCATCCTTGACTACACATTATGATGGATTGGAGAATGCAAATTAGTGTTAATGAGTTCCAGTGAGAAGGCAAATACAAAAGAATTGTGCTTCCAAAACAGTAGCAGTTGAAAAATTGGTTGTACAAACAAAAAGAATTGCCATCTAGAATTTAAAACAATGTCAAACAAGCAAGAACTCCTGCTAAATTTTATGCTAACTGAATGAATTTTATCGTATTCTGAATTGTCAAAAGAATAAAATGGAAGACTAAATGTGTACTCCCTCCGGTTCCATATTAATTGACGTTTTAGACAAGGTTGATGTCAAACTTTTATAACTTTGACCATCAATAACTTTAAAAATATTTAGTTTAAAGGAACTAGAATAACATATATAGATTTGTCTTTCAAAGCACTATAATAAAAGTAAACATGCATTTATTTATTATATATATTATAATAGAAAAATAAGGTCAAAAATATATTTTGTAGACCGTGTCGTTGTCCAAAACGTCAATTAAAATGAAACTGGAGGGAGTAGGCAAAAGGAACTCCGTTTTTTCCTGCATGAACACGAGGCAAAACAAACTCCATGAAACCTGATATCCTTGGTGTAAGCTTCACTGAGAGAGAATGAGACACGGCAACACAATATTTACTTTGTATAACTAATGTTTGTGCTTTTGTTATTTTGAGTGCAGGTTCCAAGGGTGCCGCAGTATGACGAAGGGAGCAATGTGGAAGTCATGTTGGATACAGGAAAGCACCGTGCAGCCTGGGTAACTGCTACTGTCATTAAGATGGTTAGCAGTAAAAACTATGTTGTTAGGCTTAAAAATAAGGAAGGCTCAGTTAACATCGTAGATTACTGCTATATTCGACCACAACCTACCTTTGACAGAAAGAAGTTTGAGTATGAACTGGAGCCCTCTGCAGAGGTTGAAGTGAATCTGGGTGGTGCCTGGTCGCTAGGCGTCATCTCAGATGTTGGAAGCTGTGGATATGGGGTAAGGCTAAAAGGACATGATAGCTCAGAGGAAGAGGACTACATGCTTGTGTTGCGTGCTTTACTCAGACCCTACTGCAAACAGGATGATCAGGAATTGATGCCTTGTACAGCAAAGGTATTTCTCCAACTAGTCATGTTGTTACTTGTGATTTGGGTATTTTCTCCTCTTCTTTCTTGGTACTACCAGTCTACTGCAGTGTTCATTTTTCTGCTGTGAATAAAAGTTTACAATGTTTTCTTGCCGTGCTTGTATGCCTTCTTGGAATATGTGGTGTTTGTCATTTTAATGTCAGTATGCCAGCTTAGTTGTCCCTGTGCTCTGGACAAGCAGGTAACAAAGTTGAACAAGCTAGAGAACAAGAACATAAAAGGGAAGGCGCGCATGCTAGTTTCAAGGAAACTGCCTAACCTAGGCTGCACACGGAGTGGTGGTAAACAAAGACACAGCATGAAAAAGGTTGTCCTGACTCCGTTCTTCTTAAATTGCAAACTTAAATTGTGTCTTAAATTGCAAATTTCCGCGCATTCATACAGAAAAGCCCGCTTGGCGCTTTCACAGGTCATAGTGCTTTTATCAATATATATTTTGACCATCAAATATTGTGCTTCAGCATCTTATGCTAATGACATCATGTTTTTGGTATACGCTTTCTTCCTCCAAGCAATGACATTATCTTATGCTAATGACATCATCTTATGCTAATGATTTAGTTCTCTCCTAAACTGTGTTGTCATTTGGATAATTGTTGTTCAGGAATTTGCTTGTACAAGTTTGGATCTTCCATGTATCTCTGCACCTAAAGATGCTGTTGAAATCAAGGGCAAATCTAGTTATGTCGATGTAGTCGAAATCAGTGACAACTCTGGCTATGATGTTATTCATATCAGCGATGATTCGAGCTGTAACCCTAGAAGAAAGAGAAGGCGACAGAATCTCCTAGAGGAATAACTCCATTCCCGGCATACTTCCTATCCGATTCAAGAATCACAATCCAGGCTGAATATGTCACCAGCACGAAGTCCTTTGAACTGTGACCCGTTGCTAGATGTAATGAGGCATCCTAAAGTAGAGTCGTGCAACCATGTGTTATCACAATCTTGTCGCCATTGGAAACACCACAGGCTCATTTCAACAACAATGCTGGGCAGCTAATTCCTCTGCCAAGTTATCCGGTATTAGAGAAGTTGCCAGTTAAAGTGCTTCCTGAAATGAATGAAATGAAAGAAACAAATCATGCTCATTTACAAGCTGAGTTCTTGGCACCTGATGATTGTACAGCCGGAGACCAAAACTATGCTCTGCCTATAAAAGTTGAGGTACATACGTCTGTTATCTTTATTTGAGATGAAAATTAATCCCTTCTTGATTGTCTATCTGTTGCTAACTCACCTCAACTTAGGTGGAGAGCTGGGTCGCTGATATCCGCAAGAAAGAAGCAGGTACCGGTCTGACTACCTCAAACAACTGTGAGTACTTGTTATAACGACTTTGTGTTACATTCAATTGTAAAACCTGTCTTAACTAGAACGAAAATATCACCAGCAATGCAGACAATTACTGATAGTGGTGAAGACAATTCAAGAAGGCCACGATCAGGAGATTCTGAGATACCAAATTCCAGTAAATTAGAACCATATTCATCTGAGCAACAAAGGTTTGAGGCCGATCTGCCATGCATGCCAGTGCCTAACAATGTTACTATTAATACTCTTCCTCTTGTTACCAGACATACGTTTCAATTTGTTTCTCGGAACAAACTGGAAGTGCCAGTGAGACATAAGAAGGCCCCTGATGCTGTAAGACCATCTACGTTTTCCCCCCTGTTTTATCTTCTGTTTAAATGTATGTGTATTTCCCATCCATGCTTGATCATCTTGATGCTATTTGTACAGCTGGAGATGAATACCAATTCGGTTGTCTTCTCTCCCAAGGAGCAAACACACTGTAATTTGGAGATCTTTAGTCCAAACTGTAAGTCTTGCCACAACTTTAAGATAGTAATTTTTGATGCATTGATACTTAATACTGGTCTGGCTGATCTGAATATTATTTTTCTGCAGCCAAGAAGATCATTGATGCGTCACACTATGAAAGTTATGCGTCATTACAGCAGCATCCTTTGGGCCAATGTCAAGTTCCAAATTATTGGAGTGCTGCAGGGCAATCTTCATTTGTGCATCCGAGCATAACAATGAACCTATTCACAATATTGCCAGCACCTAACAGTCATCCAACTACTTTTGCCTCAAGCTTGTTGATGGGGCCTTGTGAGAAAATAGAGGTTTTTGAGAATCTGCCACAATTACCACATTTCGGAAAGTTGATTGGTTGCCCTCCTGAGCTCCGCGAAGGAAAGGCTCTGGGGCTAATGGCATCCTTCGCAAATATAGCAGAGAGCATACAAAACATGTGAATTCAGGACGAAGAAAACGTCTTTGAGGAGAAACTGAGGTGCCTCTCGGAATTGGAAGAGGACGGATTTGATGTTAGGGCCCTGAAGGAGCGGCTTGAAAACCTCGTGAGCATAAAGAATCACCAGACAGAACTCAAGAAGAAAAGAGCAAGATTGGATCAGTTCATGCTTGAGAGAGAGGTGGACAATGCCTCTGTAGAGCAAAGCCAGAAGCTGCTCGACATAATGATCAAGGAGCTTGAGCTGAAACTTTTAGAGTACCGAGAGAAGAAGGCATCACTCGTGGAGAAGAAAGCAGCGAACTGTTCGGAAATTGCAAAGCTCCAAGGCGACATGGATCAAATTGAGGAGTCATTCCTTTCTGCCGAGTATGATTTCCACACCACCGCTGCTGCGCCGTGGTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA001425