BGIOSGA001564

From RiceWiki
Revision as of 10:23, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA001564| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA001564, complete gene.| tag = P0436D0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA001564

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA001564, complete gene.

LocusTag

P0436D06.9

Ensembl Transcript ID

BGIOSGA001564-TA

Ensembl Protein ID

BGIOSGA001564-PA

Length

7468

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:19254228..19261695

Sequence Coding Region

19261378..19261695,19257547..19258091,19255855..19255941,19255719..19255775,19255388..19255626
,19254892..19255097,19254228..19254284

Genome Context

<gbrowseImage1> name=IndicaChromosome01:19254228..19261695 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:19254228..19261695 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGGCTCCTCCGACTCCCAGGCGCCGCTGCTGCTCCCGAGGGGGAGCCACCGCAAGGAGGAGGAGGAGGAGGAATACGCGGCGGCGGGGAAGGTGCGGGGCTGCTGCGGCGGCGATGGGGAAGGAGGGTGGTGGCGGGAGGCGATTGCGGAGGCCGGGAGGCTGGCGTCGCTGGCCGCGCCGATGATCGTGGTCGCGCTGCTGCAGCTGATGATGCAGCTCATCTCCACCGTCATGGTGGGGCACCTCGGCGAGGTCGCGCTCGCCGGCGCCGCTATCGCCAACTCCCTCACCAACGTCTCCGGCTTCAGCGTCCTCATGGGACTGGCATGTGGGCTGGAAACTATTTGCGGACAGGCTTATGGAGCAGAACAGTATCATAAGCTAGCTTTATATATGTACAGGTCCATAATTGTGCTTCTTGTTGTGAGTGTACCAATCGCCATCATATGGGTTTTCATCCCAGAGGTACTTCCTCTCATAGGTCAGCAACCAGAAATAGCAAGTGAAGTTGGGAAGTATGCATTGTGGCTAATCCCTGGTTTATTTGCCTTCACTGTTGCTCAATGCTTATCAAAGTTCCTCCAGACTCAAAGCCTAATATTTCCTATGGTTCTAAGCTCATCAATAACACTAGCACTCTTCATTCCTTTGTGTTGGTTCATGGTTTATAAAGTTGGGATGGGTAATGCTGGAGCTGCTTTATCAGTCAGTATCTGTGATTGGGTCGAAGTGACTGTTCTTGGTCTTTACATTGTTCTCTCACCTTCTTGTGAAAAAACTCGTGCTCCACTCACATGGGAAGCATTTAGTGGGATTGGAAGTTTCTTGAGGTTGGCTGTACCATCGGCCCTCATGATTTGCCTCGAATGGTGGTCTTATGAGCTGCTTGTTCTGCTTTCTGGGATCCTACCAAATCCAGCACTTGAAACTTCTGTGCTTTCTATATGCATTTCTACTGTTGTGTTGGTGTACAATCTCCCTCATGGTATTGGAACAGCTGCAAGTGTCCGTGTCTCAAATGAACTAGGTGCAGGGAATCCAGAAGGTGCCCGCTTGGTAGTAGGGGTTGCTTTATCTGTTATACTTTGTTCAGCAGTCCTAGTGAGTGTAACACTTCTAGCGTTGCGTCATTTCATCGGAATTGCTTTCAGCAATGAGGAAGAAGTCATAAATTATGTAACAAGAATGGTACCTGTTCTTTCCATCTCAGTTATTACAGACAGCCTTCAGGGTGTCCTCTCAGGTGTTTCCAGGGGCTGTGGATGGCAGCATCTAGGGGCCTATGTTAACCTAGGTGCATTCTATCTTGTCGGAGTTCCTGTTGCTCTCTTTTTTGGGTTTGCAATGCATCTAGGAGGAATGGGTTTTTGGATGGGCATGGTAGCTGGTGGAGCGACACAGGTCACTCTTCTATCTATCATTACTGCAATGACAAACTGGGGAAAGATGGCTGAAAAGGCTAGGGACAGAGTATTTGAGGAAAGGATTCCGACACAGTCAGTCTAA</cdnaseq>

Protein Sequence

<aaseq>MGSSDSQAPLLLPRGSHRKEEEEEEYAAAGKVRGCCGGDGEGGWWREAIAEAGRLASLAAPMIVVALLQLMMQLISTVMVGHLGEVALAGAAIANSLTNVSGFSVLMGLACGLETICGQAYGAEQYHKLALYMYRSIIVLLVVSVPIAIIWVFIPEVLPLIGQQPEIASEVGKYALWLIPGLFAFTVAQCLSKFLQTQSLIFPMVLSSSITLALFIPLCWFMVYKVGMGNAGAALSVSICDWVEVTVLGLYIVLSPSCEKTRAPLTWEAFSGIGSFLRLAVPSALMICLEWWSYELLVLLSGILPNPALETSVLSICISTVVLVYNLPHGIGTAASVRVSNELGAGNPEGARLVVGVALSVILCSAVLVSVTLLALRHFIGIAFSNEEEVINYVTRMVPVLSISVITDSLQGVLSGVSRGCGWQHLGAYVNLGAFYLVGVPVALFFGFAMHLGGMGFWMGMVAGGATQVTLLSIITAMTNWGKMAEKARDRVFEERIPTQSV</aaseq>

Gene Sequence

<dnaseqindica>1..318#3605..4149#5755..5841#5921..5977#6070..6308#6599..6804#7412..7468#ATGGGCTCCTCCGACTCCCAGGCGCCGCTGCTGCTCCCGAGGGGGAGCCACCGCAAGGAGGAGGAGGAGGAGGAATACGCGGCGGCGGGGAAGGTGCGGGGCTGCTGCGGCGGCGATGGGGAAGGAGGGTGGTGGCGGGAGGCGATTGCGGAGGCCGGGAGGCTGGCGTCGCTGGCCGCGCCGATGATCGTGGTCGCGCTGCTGCAGCTGATGATGCAGCTCATCTCCACCGTCATGGTGGGGCACCTCGGCGAGGTCGCGCTCGCCGGCGCCGCTATCGCCAACTCCCTCACCAACGTCTCCGGCTTCAGCGTCCTCGTGAGTGCCCTTTTCCCTTCGATCATCTTTTTTTACCCTTCTGTGCGTGAGACCACGCCTTCTAGGGATAGAATGGGATTCACTTCGTGCCCTGTGGCTGTGGCCGTGTGGTGGTTGGCATCTCGCGCAGCCGCCAGCGAGGTGCTTGTGGAAATGCCCCGCACGACAATCCGCTATGTGGTTTTGCACCGCTGGTCAAATGCTCGAAACATACTAATCAACGCACCAAAAGTTGGTAGAACGCGAGCCGGATTAGTAATGCGTACGCGAATCCAAATCCATGTGCTCCTTTCTCAAATGGTCGACTCACCTTCGTTGCACTGATTTGTGTTAATTGCTGTTTTGGGTTTTGATTATTGGAGCTGACTGTTTTCACTTTACGATGCTACTCCTACTTGACTATATGCTATTCTCAGTTCCTCACATATGAGGCTAAGGATTTGGAAGCTTCAGTTCAGGTTCACCGTGCGCATTGGAAAGGCTTTTCTGTCTTTCCAAACATTTCGTCGTTGTATATTGATTATAAGCTAAGCGCCAGCTCTTTGATTTGAGATTGCTTCCATATGCATGTTTCGTCCTTTAGGTTGTGGACCAGTGCTTCATCTTTCGTATAACAATGAAATATAGTACCCGACTACCGTGCCGTGGCCGTGTATGTGCTTAGGGCTCTAGAAACAGATTAATTAATTATTTGCCACTCTTACGGATGGTGATAAAATGTCCCACTCTTTACTGCAGTAATCAAGTTCTTTTTTTTGGTTTTACATTATGTACTTCTGTTTGGCAATGTATTGTCCACAGCTTTGGAATAGTTGCATGCTATAGAAACAGAGTAAAGGATTGCGGACTTTGTAAATAAATGACAAATACACATCTATATTCCTTTAAAAGCCTCTAGTGGTGGCAGTGAATCTGCCCACCCCCACTATTGCTTTTGCAGTTTTTTACAAATTGTCCCCCTGATATTTTCTAATATTGTGGAATAGTCCAACATTCAGTTCAAACAAGTGAATACCAGATAATCATAAAAGCAAACAAGTGATACTAAGATATTTGATAAACAAATATTTTTCTATGACATATTATGATTATTTTTCTTCTGCCCATAGCAAAGCTTGGGCATTTTGCTAGTTATTAATAATATACACAAATTCGAACATTTAGAGAAAATGGATGTCACCTTTAGTTATCTAAATGTACAACAAATTACACTTTTAACTTTTAAAATTTTCTACTCCTTTTGTTCCAAAATATAAGCACTTATGGAGTTTTTCACCGCGATTAAGGAGAGAGAGGTGAAATCAAATGACGGATTGTTGTGATTGGTTGAGATGAGGAGATAGATGGAGAATATTAAATGAGAGATGGCTGTAGTTGGTTGAGATGGGACTAGGTGCATAAGTTACTACATTTTGCGACAAAATTTAAATACCAGAAGTAGCTATATTTTGGGACGGAGGGGGGTTGTTAACAGCCATATCTTGTAAAAGTAGGTCAAAGCACACCTTAAAAGGGGCATAGCCAAGGGTTCCAACCTCTATATAGTGAAGACGAGACAAGCAATGGATTGAACATGGAGTGGACAAGTCACTTGTGTTTATTACTTCAGAAAAAAAAACTTTGTAGAGGTAGCATTACTCTTACATAAGAAGGCTTGAGTGATGTTAGGAGCTCGTCTAGTACAAAGGTTTGAGGCAATTGGACAAGCACTTCTAGGAAGACGATGTGACATGGAAGGATTCAATATTGGTGTTGACAATTGATGGTACTTGTTATGCAGACACCGAGATCCTCCTCCATGTCACAGCCTCACCAGTCACACTGTGTTTCTAGAAGTACTTGCTGAATTTCTTAAGGCTTTGGACTGAAGGAGCTCTGAGCATCGTGATCAGGAGCATCTTCTACATTGGCTACCTCTAATGAGTTTCACCTATTGTAACTGCTGCTGAATATATAAGCAAATATTGATTTAATTTATTCCATAAATAAATCATGACATTGCAAATTAAAACTAGCATCATCATATCATACGATCTACACATGTAAACTAGATAGTAGCGAATGCGTACCGAGGGTTCTAGAAGTTCGGCTACACAACATGAAGGACTCGTGGTACTGGGCATTGACGACGGCACGCAGCACCCGAGCGAAGAGGAAGGCGAGCCGTTGTGGATGAATAGCAAGCAGTCGCGTGAAGCGCTTCCCAAAATTGCCGCCTTCTCCCAGTGTAGGACATCAAAGGCGAAGGTTCCGGAGACCTGCTCTCCCGATCGTCGGTGCACACCGACGAGCGGGATGGAGTAGACTACGAGTGACAACGCAGAATTGAGGAGGAGACAAACCCTAGATTGATTTCACGTGTGTTGCAAGGAGGCGACGGCTCGATTTATATAAAAATATCAGGACACCTGCACGATCTCCACACCACGTAACCGAACCGAATAAGTCGCGCGTAACTCATCCGGAGTCCACTCCTCTCCACGCACCGGATTATTCGGTGTGTTTCCAAAAACAAAACCGAAATTTGCAGCAAAGCAAAACTGCAAAAGGAAGCTGCATCTCGCCTGGCCATGCGAGGCGAGCGAGCGCGCGCGTGTGTTCTTCTAGTTTTCTCCACCACACATGCCTCAAGTGGCTAGGAGAGCAACCTCCCTTGTAAGAAGGTCTCCCTCCTCTAGAATAGGTAAGGTGGTACTAAACTTCCCATGTATGTCATCCCATGAGGTGGGTTTTTGTGATTTTCCGAATAATTAATCTTCATATGGGCCTTAGCCCACATACCAATTCCAACAATTGCCACTAGATGATGAGTTCGGCTACCTCCCATGAGTTTCCTCTGTCATAACCAACATGAATGAAATTTTCGCCACTTTCAATCTGTATTTTTTTTCTCAACTTCATTTTGACCCAATAGATAAATCAAATAGATGCTTTCAAAGTTGAGGGTGTATTTTGGACCTGTGCGACAGTTAGATGTTCTAAAATGGACTTATTCCTATAAAAGAAAGAGCTCCCTTCTAGCTATTACTATAAATAGACTGCATAGACCCTGAAATTGTTATACATGCCACGCTATATGTCGGCATGCTTTTCACACATAAATATTTTCTCCCAATTCACATGCCATGCAGTACATGGATGATCCGTTTGTACTCTTGCAAATTTAGCCTTCACTATCATTCTAGCTAGACTTTAATGTTATCTCTATGCTTTATCCTGATAGTTTGACTTTTGTTCTTCCTTGAAATATCTATATATTTTATTACTGATGCAGTTTTCCTTTTAGATGGGACTGGCATGTGGGCTGGAAACTATTTGCGGACAGGCTTATGGAGCAGAACAGTATCATAAGCTAGCTTTATATATGTACAGGTCCATAATTGTGCTTCTTGTTGTGAGTGTACCAATCGCCATCATATGGGTTTTCATCCCAGAGGTACTTCCTCTCATAGGTCAGCAACCAGAAATAGCAAGTGAAGTTGGGAAGTATGCATTGTGGCTAATCCCTGGTTTATTTGCCTTCACTGTTGCTCAATGCTTATCAAAGTTCCTCCAGACTCAAAGCCTAATATTTCCTATGGTTCTAAGCTCATCAATAACACTAGCACTCTTCATTCCTTTGTGTTGGTTCATGGTTTATAAAGTTGGGATGGGTAATGCTGGAGCTGCTTTATCAGTCAGTATCTGTGATTGGGTCGAAGTGACTGTTCTTGGTCTTTACATTGTTCTCTCACCTTCTTGTGAAAAAACTCGTGCTCCACTCACATGGGAAGCATTTAGTGGGATTGGAAGTTTCTTGAGGTTGGCTGTACCATCGGCCCTCATGATTTGGTAAGTACATGTTACTCCCCAATTTACAAAAAGATCATTTTAACAATGTAAGGTTTCAAGGATGCCTGAAGATCTTACTTAATTTTGCTATATCTTGGACACTAGAATATTTTCTTGATTACTCTTGTATGATTAATCGTTATCTTTTCCTGCCATTTTGACATTGACATGGTCTGAAGAACACATATTTGAGGCATTGACAATCATTTTGCTCTAATGGAGTATTTGCAAATATTAGGAAACGTGCATTGATATGAACCACTTTTGATTGCAAATATACTAATATCATGTTTATGTTGGCTAGTTTGAATAGTTTTTATCTATATCCATGGTCATATTTTTAAACATTGACCACACATGCTCTTTGATTATTAGGGATGGAATTCCCAGCTAATAGTTACTTCTATTCTCTTATAGAGCTAAATTTCACAATTAGAAGAAATGATGTGCAGTACAAAAAACCTTCAATCTAGTTTGGCATCTTTTCGATATAAACTTGTAAAATCTGTAAAATTTGGTTCGAAATACAATCTTAGACATTTTGTACTTGTGACGGCTTTGTAAAGCTCAAAGCCTTCAACACTACATTAGATTGAATGCTGTGAAACATCATATACATGCTAATGGTTTTGCCAACAAATAAGGAGAGACTTGTGGAGGAAAGTGGAAAAATGCAATGGAGCCACAATAAACAAAAAGGTGTGCAAAGAAGACCACCCATTCTTTAAGCATGCATGCAAAAGAGGACATAACAACAATACCTTGAGAATTCTCAACACCTTTTAGGACCTTGAATTTTCCACAATACAGGAATCATTTGGTTATGAAATCTTAGGCTCCTTTTTTGTGACTGCCTTCCTGTTGATATTCTCAATGCTTACAATTTCCCCCAAGGCCAAAATTTTTTCGTTCTATATAGATTAATTACTCCTTGTTCAAGTGTTAGGGATAGATTGTTGATCTTGTTATGCTACTAAGTTTAATACAAGCAGGACTACTACTCCATTGCAAATAATTATCCTTACAATTTTGAAGAGTTTAACAAAAAAAAAACATGTCACCTTTACAGTTGTAAATAGACTTTGTTTCCTCCCTTTCTTTTAGTAATGGTAATATCGTAGATGACATAAAAGGTCAAGTAAACATTAAAGTATCTGTTCACACATATTTACCATGCACGCATGATATGACTCATTTCAATAATGAAGTTTTGTCTGTTTAGCTTTCTCTCCACTTTTAAATTAATACGTGATTTTAGGCTACTGTCTGTTTAGCATGAAAGCAATATTTAGTACGAAGAGGGAAAACTTTGGCCAATGAATGCGTTCCATTGGGACAATCAGGAACAAAATGTGTACAGGAAATGGAGGGCAATTGAAAACATACACATTCATCCATTTAAACTGTAGCGCACATTGCTCAAAATATCACTTGACTCTATGTCTCCTGCCCTCTTATTCTAAATTGGTAGGCCTCTCCATATATAATGTGAAGTTAAATCATGAATTTCTTTTACAGTATAATTAAAAGTAATATTACATATGTTAAGCTTCAAACTGCATAACTTTCTTCCCCAGAATTTAATTTAGCCTCACATGTCAACAGCCTCGAATGGTGGTCTTATGAGCTGCTTGTTCTGCTTTCTGGGATCCTACCAAATCCAGCACTTGAAACTTCTGTGCTTTCTATATGGTATGCATTACATGCAATGAATAATAGATTCTTCCATTTTTCTGTTATAATGTTTAACAAATAAATATATCTGGAACAGCATTTCTACTGTTGTGTTGGTGTACAATCTCCCTCATGGTATTGGAACAGCTGCAAGGTGGGACCACTCATTTTTCATCATGCTTAATTAACATCTTTTTTTGTACCCGTCAGATGTTTAACCTAATACATGTTATATTCATGTGGCAGTGTCCGTGTCTCAAATGAACTAGGTGCAGGGAATCCAGAAGGTGCCCGCTTGGTAGTAGGGGTTGCTTTATCTGTTATACTTTGTTCAGCAGTCCTAGTGAGTGTAACACTTCTAGCGTTGCGTCATTTCATCGGAATTGCTTTCAGCAATGAGGAAGAAGTCATAAATTATGTAACAAGAATGGTACCTGTTCTTTCCATCTCAGTTATTACAGACAGCCTTCAGGGTGTCCTCTCAGGTATCAAATTTACCTCTAAAGGCAAAATTTTATTGCCAGTTTCATCATATAAAGACAGGTTTTGGTTTGAATATTTGTGTTTGTTGTAATTCATATGCATTATCCAAAACCAATATTTCTGTTAGACATAATAATGCAATATGATTGATGGGTGATTGTTAGGAGTGATCAACATTGTCAATCAGTCCATTTGATATCAGTGCTTGTTACTCATAAAAAAAAAATTGAACATTAGAGATTCTTTGCAATGCTAATGCAACTGTCTTACTTAATATTTCAATTTTCACCAGGTGTTTCCAGGGGCTGTGGATGGCAGCATCTAGGGGCCTATGTTAACCTAGGTGCATTCTATCTTGTCGGAGTTCCTGTTGCTCTCTTTTTTGGGTTTGCAATGCATCTAGGAGGAATGGGTTTTTGGATGGGCATGGTAGCTGGTGGAGCGACACAGGTCACTCTTCTATCTATCATTACTGCAATGACAAACTGGGGAAAGATGGTAGGTTCCTTTTTTCCATTTCTTCTCCATAAAGTTTTATCAGTACAGGCTGTCTCTAAACCGTAATGCCTCAAAATTTGGATAACAATACTAACAGATTCTTGTGAGTGATTTGGGATATTAGAAACCATGCAGAAAAAGTAAAGTGAGCCTGATACCAAGCTCAATTCAATCCGGTTTGGAATGTTAAACTTTTAATATAGTCTGCAGTCAAATGAAGTAAAAAAAAAAAAGCAGTTGCCAGTTGTTACGGTTTTAACATGGTAGTCAGTTTTGGAGGTTTTATGTTGTACCACCATACAAAAGAAGCTTAAGAAATACCCAAAGTGTGTTAACTTTACTTGTGTAAATCTATTTCAAAAGAGTTTAATGTACCAAAATGCACAAAGGGTCCTACTTAGCTAAAAACTACATCGAGGGACATTATCAATGTTTCCTTGTCTTGGTATATTGCAATGGTCTATGAACCAATTTTCCACGTTTCAGTCTACAAAACGAAGTCCTCTTGAAGTCATATACCTGATATATATAAAAAATTGATTTTGTTTTTTATACTATGTTCTGAACGTTTTACATTCTTATCTTTCTGTTGGTTATTTGCTTGCAGGCTGAAAAGGCTAGGGACAGAGTATTTGAGGAAAGGATTCCGACACAGTCAGTCTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA001564