BGIOSGA003856

From RiceWiki
Revision as of 10:57, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA003856| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA003856, complete gene.| tag = OsI_026...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA003856

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA003856, complete gene.

LocusTag

OsI_02601

Ensembl Transcript ID

BGIOSGA003856-TA

Ensembl Protein ID

BGIOSGA003856-PA

Length

6900

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:25288136..25295035

Sequence Coding Region

25288136..25288275,25288925..25288977,25292027..25292079,25292340..25292399,25293526..25293684
,25293766..25293930,25294721..25295035

Genome Context

<gbrowseImage1> name=IndicaChromosome01:25288136..25295035 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:25288136..25295035 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGGGGACCCGGCGGCGGCGGCAGCGGCGGTTGGGGCGATGAGGCCGTGGAACTACGTGGTGACGGCGCACAAGCTGACGGTCGTCGCCCGCTCCTGCGTCGGCAACTTCACCGCGCCCGATCACCTCGACCTCTCGAAATTTACCCGTATTGAGATTGGAGTATCTGCTTACTCATCAGGGTCTTCAGGAAATTTACCCGTATTGAGATCGGAGTATCTGCTTACTCATCAGGGTCTTCAGCCTATGCTTGATGCACCTGTGTATGGTAGAATTGCAACAATTGAGCTCTTCCGTCCATGTGTATTGGCATCTATCAAGTTCTCACCAGACAGCAGAGCAAAGTCATCTTGCAAATTTGTGAACGCTTTTGTCTATTTGAATCAGGAAAATCGGTATGTAATATGCAGGTCAGGGAGAGATGCTTCTGACCACATTGGACGCCCTACAAACAAGGGACAGACAGATGAACTCAGCAGGGACTATAACATAACCTGGATGACTGCGGTTGAGATGCTCGACGACTACGTTTATATTGGCGCGGACAATTGCTATAACCTGTTTACCGTGCTCAAGCGCCGTGTTGGGAGGCTTTTAGTCATTGGGCAGTACCATCTGGGGGACCTGCCGCACCATCCCTGCCCGTGCCCTCCCTCCTTTTGCCGCACCGCCCTTCCTCCCGATCCGCTCGTGCCTGCCGCCACCACGGGGAAGGAAGCTCGCCATCGCCGTCGCTTCGTTGCCGCCGGCGAGATGGGAGACCAGCAGCGGGATGATCACCTCCGGCTCCGGGTCGGCGCCACGGGTCAGGTTGCAGAGGTTGAGCGGGAGCATCGCCGAGGCGGGGTGGTTCCGCCCGCCGCCGGCAAGCTTGGGGAGCTCGCGGGCGACCTTGCCTGTCCTGTTGCGGCGGCAGCGCCTGTGCTAGCTGAGCACCAGTAG</cdnaseq>

Protein Sequence

<aaseq>MAGDPAAAAAAVGAMRPWNYVVTAHKLTVVARSCVGNFTAPDHLDLSKFTRIEIGVSAYSSGSSGNLPVLRSEYLLTHQGLQPMLDAPVYGRIATIELFRPCVLASIKFSPDSRAKSSCKFVNAFVYLNQENRYVICRSGRDASDHIGRPTNKGQTDELSRDYNITWMTAVEMLDDYVYIGADNCYNLFTVLKRRVGRLLVIGQYHLGDLPHHPCPCPPSFCRTALPPDPLVPAATTGKEARHRRRFVAAGEMGDQQRDDHLRLRVGATGQVAEVEREHRRGGVVPPAAGKLGELAGDLACPVAAAAPVLAEHQ</aaseq>

Gene Sequence

<dnaseqindica>1..140#790..842#3892..3944#4205..4264#5391..5549#5631..5795#6586..6900#ATGGCGGGGGACCCGGCGGCGGCGGCAGCGGCGGTTGGGGCGATGAGGCCGTGGAACTACGTGGTGACGGCGCACAAGCTGACGGTCGTCGCCCGCTCCTGCGTCGGCAACTTCACCGCGCCCGATCACCTCGACCTCTCGTAAGCGCTCGCCTCGCTTGTTCGCTCGATCGATCACGCATTCACCGCACATGCCTGCTCCTCCTCCTCCGCGGGATCGCGGCGGGCGCTAGGGCTTTGCGGCTGCGTGTTGGTTTTTTTTTTTTTACCCGCTTAAACCCTATTTCCCCCGTCGATGTTTGCTGTGATGATCGATTCGATGCTTTCGTGCTAGGTTGATCGTACTACACCGAGGTGGAGGTGCTCCCCTTTTTTTTTTGTTTTTTGGAATGGGGCGTGCTTGCGATTTGCGTCCCAATTTGGACACAGTGGGTTTTGTGGGAAATTTAAGAGCTCCCCCGTGTATTTGTTCTATTTTCCTTCTCCATGTATTGTTGTTTGGAATTCTCAGTTCGTGTAGCACACTAGTCATTCACACTAGTCATTCATCAGAAATGGGCTTGTGGATTCAGTTGTAGTGGATGTTAGCCTACTCATTTATTTTAAAAAAAATTCGTGGTACTGTGATGATGGTGAAGCAGTAAAACATCTGTGAGTTAATAAAACTTAGATTGATTGTGTTTTTTCTAATATGTTTTTTTTGTGTGTATTTGACTTCTATTTTTCTCCAAAATTTTATGTACATCCTTCATTTGTTTGGGCTAAAGCTTGACCGTACAACAACTTTCAGGAAATTTACCCGTATTGAGATTGGAGTATCTGCTTACTCATCAGGGTCTTCAGGTCAGACAGATTTGCCTCGACCAGAATATGTTCCTTCTGTTTGAACCTATCTATTATTATGGACAGCAAATAACTGTGCCTTGTTGTTAGCATCAATTGTTGAAAAGGTGTTTTTTAAGGTTATTCATAATGGCTACTGTTGTTCAGATAAATGCTGATATACTTTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGTTGGATCACAACATATCACGAATGAATGAGGCTAAAAGAGTTAAATACTTACATTAGGGCCAGGTAGGCCAACAACTATCAGAGAACAACAGCGGAAGACAAAATAATATAAGGGCCCGGTTAACATGCCACAGGCAGTCGACTGTGGAACGAGACCTAGAACAAGACCGCACTCCGATCATCTTGTGGAATACGTAAGCGTACCGACAAGGGCTTCTCTTCAACACTCTCCTAAAAGATATATAAATAGCAAGGGTGAGTACCAACCGTACTCAGCAAGCCACCACAACAACAATGCATATGACAGAGGGTATTTCAAGGAATGGCATCAGGTTCTTTTGCATAAAGCTAATTTTACAATTCTTTTCACAAGCCTAAAACCTAGCATAGACTGATCAAATTTTAGTACCAGTGTTCACTTTAAACAACGACGGTTCTGTCCACCATCCATTGTGATCCCAAGGATAGCTTCCCGCCATTGAATCGTCATGGTTTTCTGAGGATGTCCACCTTCCCTCCTCTCGGGATGTGGCTCCATCAGCATAAAATTCATCATGCAATATCCCATCCCACACAAGTTAAGAATTTAGAGTCTAGCCAAGTGTAATACATGTCCCGGTGCTCAATAACCGCGAGCACGGCTATTCGAATAGATTTGGTTTACTCACACTGCAGTGGATGTACACTTTACCCGCACTCCGCGACTGCCCAACACATGAGCCTCGTCCCAACACATGAGACGCGTCACGGCAAAGCTTTTCGATAACCTCGCATTGGCAGTACCCGCTCCATGAACTTTTCATCCTCATGCACTCTAGGCGTACACGGTTTCTAGCAGTGAGAGGAGTTCTGGCGCACCCGGGAAGGGAAGACTCACACATGCATTAAGTTATAATTATGTTTTAGATTCTCACATGGCAGTCCTACCGATGGCGACACCACTGTAGACACCCGCATCGCGGTCCTACCAATGGCTGCCCCACCGTAGAGCCCCTGCCTCACACATCAAGAAACCACTATGCATGGATACTGCCTCCGCTCAGCTATCTACTCCGCTAGGTCTATACCCATACGAGAAGTGCGGTTGTACGGGGGTCGTTTCATGCTTAACTTCATGGCTCGGTCCTTAATTGACCAGGGACGACACTAGCCTTTTCCGGACACCACCCAAGTCCTCCAGCCGCCCCAGTCGAAAACAGTTGTTTTACTTTATTTTCCTTTCACAAATCATGTCATCAATATCATGGCAATGTGGCGCTCATGTCTCCACATGCCGCATCTCAATTACCTTCCCAAAGGTAATTGCCCAAGCATATAGCATTTGATAAATATGAGTATGCATGAATCTAAAATAGCATTTCTAAGCAAGTGTCATAGTTGACTAGGGACTCGTACGTATCTATGGTTACAAAGATTTAAAGGTGAACAATAATCAAGGCATGGTATAATCACAAGTAGGATGTTCATAATTGCATGCAATTTTATTTGTAAACAAAACAATTTCGCAATTGGGATCAACATGTTCAAAGAATAGTGATGACTTGCCTTGCTCAGGATAATCCTTATTATTGATATAATCTTGATCAACCTTCACCTCCTGGAAGTTGCAGACGTTGCCTCACGACTAACCGATACACAAGGTCTATAATACGCGAGAAAAACCAATATTCAAACAACAATCAAATACGCGCAACAAAATGTACTATTCATGTCTGCTAATGGATTCCAATCACGCTAGGGGCTAAGGTTTCTTAATCTTTCTATTGTCAACGTGGCCTATTTAGGAGTTAACCAACATAGCATTTATGGGATACATATATATTTGGCTAATCGGTGGTTTAGTCTATCAAATGGCTTATGGAAGGATTATGGCTAAGCATGCATCTATCTAAATAGGACGGTTATATACTAGAGGTTCTCTTGTTAGATGGATTTAGGATCAATCAAATAATTACAGTGAATCATTCGTATTATTTATTTTATTGATGGAAGCTTTACTTTAATTATGAACATATTTTACTTGCCATTATAAATTATAAAAGGGCTAATAATTATCCATGCTCTATATGTTAAATTCGGGAAGTTTATAATATTATAGTTACAGATTATCTCTTAATGAACAATCCGGAGTTACAATTGAACTATGAACATATGAGGTCAAGATTTATAATTAGTACTTATCTACTATTCATGTTTGTTATATACTCCCTCTAAATTAATATAAGCAATTTAATACGATACCATATATCTATAATGGGATGTACAATATATGCGTGCATAATATCTTAATATATTGAATCCTTTATTTGAATAGTTTCTACTTACTGCTTGGTTAACTAAGGGTTGCTCACCTTACCTACTATATGCTATTATATGGGATATGTCATTGATTAATTTCATATAGGTGATTTAATCACACTAGCTCTGTTATTATTTGCCATAAACAAGCTTAGGACAGATCTATGTGTATCTATATTTTACTTACCTAATAATTATAAGGCTAACTCCATTTAAATAACTAATAAGTCGTGGGTTTAATTATATTTGGACATAGATTAATAAATGGCACTAATATTTTCATATATATCCATTAATTTCAAACATTGATTATACTTAATTTATGTGGTTGCTATAGTGACAGAATATATTAAAGATAATTATTCTACTGTACAATATCTATTTTTATTTATTGGCACACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTTCTATTTTCTCCAAAATTTTATGTACATCCTTCATTGTTGGGCTAAAGCTTGACCGTACAACAACTTTCAGGAAATTTACCCGTATTGAGATCGGAGTATCTGCTTACTCATCAGGGTCTTCAGGTCAGACAGATTTGGCGTCGACCAGAATATGTTCCTTCTGTTTGAACCTATCTATTATTATGGACAGCAAATAACTGTGCCTTGTTGTTAGCATCAATTGTTGAAAAGGTGTTTTTTAAGGTTATTCATAATGGCTACTGTTGTTCAGATAAATGCTGATATACTTTTAGTTGACAAGTTAGAATTTGTCCTGGCAGATCAACTGGTTACATGATATTCTTACAACTATAACTCTGTAAGACCTTTTCTTTCCTTACCAGCCTATGCTTGATGCACCTGTGTATGGTAGAATTGCAACAATTGAGCTCTTCCGTCCATGTGTAAGTTTGTACTCTGTTTCTACAGCTAAAAAATTGAAAGATTCTCCCTGCCTTCAGACAGTATTGTTGTAGGACTGATCTTAAGATCTTATGTTTTCCGGTCCCATCGTTATGGCATATTTGCAAACGAAAAATAATTTGTGAATAAAACTTTTATATACGTGTTTTTAGCAATTTAAAAGCAAAAGCTGAAAAATAAATTTCAATGAAAAAACCCCAAAATCAACTCCAAATTTGAAGTTAAAAATTCAAATTTTAGTTGAAAAGCATAAGCATAAGCGAAAAGATAACGCTCTTCATTCCTTGAATGAACCTCAAGAATTAAGATTCTCTTTTCATTTGTACGGAAAGATACAGATATTGTATTCTTCACTGGGATGGGAGTAAGTCAAAGCTTCTTACAAGGTTTGATCTCTCCATCATCACATTATTTTTATATAGATTGCAATTATTAAACTCCATTTTTATCTTAAGTTCCTTCCTCAGTAGATATTGTTAGGCTGTGTTTGGAACTCCAAGTTACCAACCCCTCTCCCTCGTTTTCCGCGCGCACGCTTTTCAAACTGCTAAACGGTGCGTTTTTTAAAAAAGTTTCTATACGAAAGTTGTTTAAAAAATTCAAATTAATCTATTTTTTTAAAAAATATTAGCTGATACTTAATTAATCACGTGTTAATGGACCGTTCCGTTTTCCGTGCGGGGAGATTGGGTTCTCAACCCTACTATCCGAACACAACCTAAAATATGTATCCGTGGCAACGGTATTTTTCCTGCAATCAAACATTCAGATGGTTTTAAAGTATGCATGTGATAGTGACCTGACTGCCAGACTGACATTAAAGTCCAATCTAGCCCCTTTAGCCTCTCAAAGAATTCATTGGAACCAATCATAGACATGCATTCATTCACTTAATCTATCAATATATCCTTGAACGAGCTATAAATTTAACATTTTTCAGGAATACGTAAAAAGATTGCGCACACCTTAGCAAGTTATTAGGAGTGAGTAGCCATGAAAAGGTTTTGCTTAATTTAAGTATCTATTGATCTAGTGGGCAGGGAAAATGTTTCACTATGTTAGTTGTAGATGAATGTATGATTTCAAGGTTCTGCATCTTTATATTAGGTATTGGCATCTATCAAGTTCTCACCAGACAGCAGAGCAAAGTCATCTTGCAAATTTGTGAACGCTTTTGTCTATTTGAATCAGGAAAATCGGTATGTAATATGCAGGTCAGGGAGAGATGCTTCTGACCACATTGGACGCCCTACAAACAAGGGACAGGTACTGTGTTCATGATTAGAAGCATTTATTTTTCCACTTCGTGTTCTGTACAGTTATCAGCTATGTGTTTCTTGTTAACAGACAGATGAACTCAGCAGGGACTATAACATAACCTGGATGACTGCGGTTGAGATGCTCGACGACTACGTTTATATTGGCGCGGACAATTGCTATAACCTGTTTACCGTGCTCAAGCGCCGTGTTGGGAGGCTTTTAGTCATTGGGCAGTACCATCTGGGGGACCTGGTGAACAGATTCCATCAAGGCCCCCTTGTGATGCAAGATCCAGGCTCAGAAGTAGACCAGATTCCTGCCTTCATCTTCGGTGAAAGCAGAATAGACTCAACGCAATAGATTGGATTGATATCGGTGCGGAGTACATATAGGCACGAAATCTCCCTTATCCACTCAGCCGGTTCATAGAAACTGAACCGAGAGAGATAAGGGGAATCGGCAAAATAGGGAAACAGAGATATACACGAGATACAATTCTAACATTCGGCACGGCCAGTGGCGCCATCGGTGTCATTGCCTCTCTTCCACATTACTCCCTCCGTCCCAAAAAAGACAAACCTTGGGTTTGAATCTGGACATGCATCATGTTCCTCGAGAAGCTGCAGCTTGTCCTCGCTGATTACATCAAGAGCGTTGGCAACCTTACCCACGCGCAGTGGCGGGCATTCTGTACTGACGGCAGGAGCGTAGGTGCGGCCCAGGGGATTTGTGGACAGTGATCTGATCGAGTCTTTCCTTAGCCTGGAGCCAAGCAAGATGGGAGGAGGTTGCGCGGATGGTGTGGCTTCATGCGGACGAGCTGTGTAAGAGCATCTCCAACAGCCTCTCCATACCACTCTCCAAGCTAAATTTTAGCTGATTTGATACAAAAACACACTCAAACAGAATGGCTATCCCAATTGCCAAAAGTTAGCAATGGCCAAACATGGGCTCGAGCTAGCCAAACTTGGCCAGCCTTTGGCCACCCTCAGCCACTGTCCATCCGTGGGCCCACCAACTTTTTCCTCTCTCTCCCCACCAGCCGCACCATCCCTGCCCGTGCCCTCCCTCCTTTTGCCGCACCGCCCTTCCTCCCGATCCGCTCGTGCCTGCCGCCACCACGGGGAAGGAAGCTCGCCATCGCCGTCGCTTCGTTGCCGCCGGCGAGATGGGAGACCAGCAGCGGGATGATCACCTCCGGCTCCGGGTCGGCGCCACGGGTCAGGTTGCAGAGGTTGAGCGGGAGCATCGCCGAGGCGGGGTGGTTCCGCCCGCCGCCGGCAAGCTTGGGGAGCTCGCGGGCGACCTTGCCTGTCCTGTTGCGGCGGCAGCGCCTGTGCTAGCTGAGCACCAGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA003856