BGIOSGA004111

From RiceWiki
Revision as of 11:01, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA004111| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA004111, complete gene.| tag = OJ1159_...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA004111

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA004111, complete gene.

LocusTag

OJ1159_D09.6

Ensembl Transcript ID

BGIOSGA004111-TA

Ensembl Protein ID

BGIOSGA004111-PA

Length

2282

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:29423820..29426101

Sequence Coding Region

29423820..29424090,29424221..29424445,29424964..29425112,29425218..29425494,29425821..29426101

Genome Context

<gbrowseImage1> name=IndicaChromosome01:29423820..29426101 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:29423820..29426101 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGTCTCCTCTACTTCCGGAGGACTCTCGCCGCCGGCGGTTGTGCTGGCCGTGGCGGTTGTGCTGTCGGCGGCGGCGTCACGGGCGCTGGCGGCGCCGTGCTACCCGCGCGTGTTCTGCTTCGGGGACTCGCTTACAGACACCGGCAACATCGCTTTCCTCTACGGCAACGACTCCCGCCGGCCCTCGCTGTGGCCACCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGCCGCTCCTCCAACGGCCGCCTCATCATCGACTTCATCGCTGAAGCGATGGGGCTGCCGTTCGTGCGGCCGTACTGGGGCGGGCAGACCGCGGGGAACTTCGCCAGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGACTTCTTCCGGGAGAGAGGGGTGCCCATGGACGACGACACCGTGCACCTCGACATGGAGATGGAGTGGTTCCGTGATCTGCTCGGCATGCTCTGCACCGGCGGCGACATGGACGGTTGCAAGGGCATGATGAATCAATCTCTTTTCTTGGTTGGAGAAATCGGAGGCAATGATTACAACCTTCCTCTTATGAGCGGCATGTCCATTGAAAAGATTCGCAACTTCACTCCTAGTGTCATTGCCAAAATTTCTTCCATAATCACCGAATTGATTGGACTTGGGGCCAAGACACTAGTTGTTCCCGGTAACATCCCAATTGGATGTATTCCAATGTACCTCATGCAATTTGAGAGTGATAAGAAGGAAGATTATGAGCCAAAGATAGGTTGCCTTAGGTGGATGAATGAGTTCTCGCAATACCACAACAAACTTCTTGTAGATGAATTGGAAAACTTGCGCAAGCTTCATCTTGATGTGACCATCATCTATGCCGATTACTATGGAGCTGCCATGGAAGTTTTCCTTTCCCCTGAACGATTTGGAATTGAGGATCCTTTGGTCGCTTGCTGTGGTGGAAGAGGACCTTATGGTGTATCTGCATCTGTACGCTGTGGATATGGCGAATACAAAGTGTGTGATGACCCAGCAAAATATGCATCGTGGGATGGCTTCCATCCATCAGAAGCTGCATACAAGGGCATTGCAATTGGCCTGCTACAGGGTTCATACACTCAACCTCCAATTGTTAGCATCACTAATTCTTGTCCGCAGATAATTGGCCTTGGTTCCTCTGTTGAACACAAGGCCATGTACGACTTGTAA</cdnaseq>

Protein Sequence

<aaseq>MVSSTSGGLSPPAVVLAVAVVLSAAASRALAAPCYPRVFCFGDSLTDTGNIAFLYGNDSRRPSLWPPYGETFFHRATGRSSNGRLIIDFIAEAMGLPFVRPYWGGQTAGNFASGANFAVGGATALSPDFFRERGVPMDDDTVHLDMEMEWFRDLLGMLCTGGDMDGCKGMMNQSLFLVGEIGGNDYNLPLMSGMSIEKIRNFTPSVIAKISSIITELIGLGAKTLVVPGNIPIGCIPMYLMQFESDKKEDYEPKIGCLRWMNEFSQYHNKLLVDELENLRKLHLDVTIIYADYYGAAMEVFLSPERFGIEDPLVACCGGRGPYGVSASVRCGYGEYKVCDDPAKYASWDGFHPSEAAYKGIAIGLLQGSYTQPPIVSITNSCPQIIGLGSSVEHKAMYDL</aaseq>

Gene Sequence

<dnaseqindica>1..271#402..626#1145..1293#1399..1675#2002..2282#ATGGTCTCCTCTACTTCCGGAGGACTCTCGCCGCCGGCGGTTGTGCTGGCCGTGGCGGTTGTGCTGTCGGCGGCGGCGTCACGGGCGCTGGCGGCGCCGTGCTACCCGCGCGTGTTCTGCTTCGGGGACTCGCTTACAGACACCGGCAACATCGCTTTCCTCTACGGCAACGACTCCCGCCGGCCCTCGCTGTGGCCACCCTACGGCGAGACCTTCTTCCACCGCGCCACCGGCCGCTCCTCCAACGGCCGCCTCATCATCGACTTCATCGGTACGCCTCGTCATCCATCCAGGCCTCGTCTGCATATCGATTGATCGCTCGATCCATTGCTAATATGAGATGTGGAATAATTCGCGCGCGCGTGGTGTGCATGGGTACGCCTCGTCGCGCCGCGCCGCAGCTGAAGCGATGGGGCTGCCGTTCGTGCGGCCGTACTGGGGCGGGCAGACCGCGGGGAACTTCGCCAGCGGGGCCAACTTCGCGGTGGGCGGCGCCACGGCGCTCAGCCCGGACTTCTTCCGGGAGAGAGGGGTGCCCATGGACGACGACACCGTGCACCTCGACATGGAGATGGAGTGGTTCCGTGATCTGCTCGGCATGCTCTGCACCGGCGGCGACATGGACGGTATGTTTGAATCAAAAAACACCTCTCGCCTTGCACCCACCTTTGACAATGACGTTTTGAACGAGAGATCGTGGCAGTTCTCCTTTTCTAAGCACAAATCGTAGCGGTTGCTATTTAGTAGGTGGGGCTTTATTGTCTAGAAAGGTGCGTGCCTGGAGATATACCACAATCATTAACAATATTTTGAGTATACTAGTATATGATAATACACACCATGCCACTGCCAAATATTTGGTAAACATTATATGATTTCCACGTGATCAATTGTTTTACCCTTGAGTTGGTTGCATAGAACAAAATTGAAAAAAAAAACAAATATGTCAGGTCAATGATTCATGATTGTGTTGCTACAAATGAACAAAATCTGTCTAGTTTATAATAGGATAATAAACGGACATGCTGGAAGTAGTAGGTGAAGATAGTTTCTCTACCATATAAAGCAACATTTTGATAGTTAAAGGTCCCTTTCAACTATTATTATCCATACATACGGATTCTAAACGATGTTTATCGCACAGGTTGCAAGGGCATGATGAATCAATCTCTTTTCTTGGTTGGAGAAATCGGAGGCAATGATTACAACCTTCCTCTTATGAGCGGCATGTCCATTGAAAAGATTCGCAACTTCACTCCTAGTGTCATTGCCAAAATTTCTTCCATAATCACCGTGAGTAATATGCCTATGTTGCATCATTTTATATACCTTCAGTTCCTGTTTCACAAAACAATACAATATTACATAGCTTGTAATGAAACAAAGCTGAGTTCGTAGGAATTGATTGGACTTGGGGCCAAGACACTAGTTGTTCCCGGTAACATCCCAATTGGATGTATTCCAATGTACCTCATGCAATTTGAGAGTGATAAGAAGGAAGATTATGAGCCAAAGATAGGTTGCCTTAGGTGGATGAATGAGTTCTCGCAATACCACAACAAACTTCTTGTAGATGAATTGGAAAACTTGCGCAAGCTTCATCTTGATGTGACCATCATCTATGCCGATTACTATGGAGCTGCCATGGAAGTTTTCCTTTCCCCTGAACGATTTGGTCAGTGAAGCTATTTCATTACTGTTTGTAAGCTTTATACTATTAATTATAGTTTGTAGGTAACTACAAGAAAAAAAAAACTTTCTGTTGGCCTCTTAAATTTGACTTCTATGGCAATCTCGAACAAATGAAATCTTTTTGTAAATATGCTTGTACCACAATCACAACATCTAAATTGGGTTTCTCTCACTCCATATATTTACCAGGTTGGCTATTTTATTTTCATCATGTTATGGAATGCACTCCTGCACTACTTTCTATATTGATAAAGAACAACTTTTCTTGTCGGTAGCTTGTTTAACACTACCTAATAAACTGCGGTTCAGGAATTGAGGATCCTTTGGTCGCTTGCTGTGGTGGAAGAGGACCTTATGGTGTATCTGCATCTGTACGCTGTGGATATGGCGAATACAAAGTGTGTGATGACCCAGCAAAATATGCATCGTGGGATGGCTTCCATCCATCAGAAGCTGCATACAAGGGCATTGCAATTGGCCTGCTACAGGGTTCATACACTCAACCTCCAATTGTTAGCATCACTAATTCTTGTCCGCAGATAATTGGCCTTGGTTCCTCTGTTGAACACAAGGCCATGTACGACTTGTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004111