BGIOSGA004150

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Revision as of 11:02, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA004150| Description = cDNA clone:J013132J05, full insert sequence| Definition = Oryza sativa Indica Group BGIOSGA004150, complete gene.| ta...")
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Gene Name

BGIOSGA004150

Description

cDNA clone:J013132J05, full insert sequence

Definition

Oryza sativa Indica Group BGIOSGA004150, complete gene.

LocusTag

OS01G0661500

Ensembl Transcript ID

BGIOSGA004150-TA

Ensembl Protein ID

BGIOSGA004150-PA

Length

7467

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:30180619..30188085

Sequence Coding Region

30180619..30180666,30180761..30180835,30180944..30181030,30181544..30181600,30181845..30181937
,30182506..30182578,30182808..30182883,30182959..30183045,30183195..30183258
,30184229..30184345,30185759..30185799,30185887..30186193,30186296..30186385
,30186496..30186558,30186695..30186769,30186939..30187001,30187731..30187783
,30187902..30188085

Genome Context

<gbrowseImage1> name=IndicaChromosome01:30180619..30188085 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:30180619..30188085 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAATCGAGGAAGCCGCCGCCCTCCGCCCTCGTCGACAACCACGTGGTCCCCGGGGACGTCGTCCTCGACCTCGCCGAGATGACCAACCAGACCATCAAGCTTGGCGCCGGCCTGCGACAGGATTGCGACACCATACAGGCTACCAGTGCTGGGAGGCTACGGCTTTCGAAGCCCAGCAAATACTGGGTCGAGAGCTCGCAGAAGAGGTATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGATAACTTCTTGGTGGATATAAAAGGTCCTAATTTGGCCTTTTTACCAGTTCTTGCATTTGAAGGTGGTACCAGGAGAAATATTCCAAAGTTCGAGATTGGTACATTAATATATGCACGAGTGGTGAAAGCAAATAGCATCATGAACCCAGAGCTCTCGTGCATGGATGCTACTGGGAAAGCAGCCGAATTTGGTCAACTAAAAGATGGCTATATGTTTGACACGTCTACTGGCCTGTCGCGGATGTTGTTAAGTTCTCCAACATGTCCAGTTCTAGAGGCCCTTGGAAAAAAACTTTCATTTGAGATTGCTGTTGGCCTGAATGGCCGAGTAATCTTTGAGTGGCATAGGGCAACGAAGTATGGTGGAAAGTCTCTTGGAGAGACTATCTTGATGCTCCCATCTTTAAGTGACCTATGCGTGACGTTGGGAGAATTTAGCCACATATGCCTCGCAAGTCGCAGACTATCGCCTTCTCAATCCGGGATGACAAGTGCAACAGGTGTAGAAAAGGTCGAAGTCTGGTGCCAAGACCTAGCCATGGGTGGCAGGAGAGTTGAATTCAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAATCGATACCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCAGCAAGAGATCGCAATACCGGTTCCTACTCTGTGAAGCACCATTACCCATCTCCTATTGTTTCTTGGATAGAAGACCTTTCGAGCTTCGGCAATGTTTCTTTTAGCCAGGATCCTGAATATGCTGATGAGCAATCAAGATCTTCAGTGGGGCAGTCTTCAGCATCTGTCAATTTGCATGACATGCAGATATCAGTTAGATTGACAGATGAATTCATCGAACTTGCAAAGGAGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCAGGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGACAACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCGTTCCGCTCCCTGA</cdnaseq>

Protein Sequence

<aaseq>MESRKPPPSALVDNHVVPGDVVLDLAEMTNQTIKLGAGLRQDCDTIQATSAGRLRLSKPSKYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFEIGTLIYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGLSRMLLSSPTCPVLEALGKKLSFEIAVGLNGRVIFEWHRATKYGGKSLGETILMLPSLSDLCVTLGEFSHICLASRRLSPSQSGMTSATGVEKVEVWCQDLAMGGRRVEFNANKCGTHPTPSKPYYVDKIDTNEQKVVHYQVNCRPARDRNTGSYSVKHHYPSPIVSWIEDLSSFGNVSFSQDPEYADEQSRSSVGQSSASVNLHDMQISVRLTDEFIELAKENTGNNVETCGILGASFRDGTYYVTMLIIPKQEATAHSCQAVSEEEIHAILSEQSLYPAGWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVIAPTDPTRNCGIFRLTDPGGMGVLRECSESGFHAHRETTDGGPIYETCSKVIFNPNLRFEIVDLRSAP</aaseq>

Gene Sequence

<dnaseqindica>1..48#143..217#326..412#926..982#1227..1319#1888..1960#2190..2265#2341..2427#2577..2640#3611..3727#5141..5181#5269..5575#5678..5767#5878..5940#6077..6151#6321..6383#7113..7165#7284..7467#ATGGAATCGAGGAAGCCGCCGCCCTCCGCCCTCGTCGACAACCACGTGGTACGCGTCCCAATCCCTCTTACCTTACCCCGACCTCCGACTCGCTATCCCTGCGGATTTGGGCTCGCTCACTCGCATCACCGTCGCCTCCCAGGTCCCCGGGGACGTCGTCCTCGACCTCGCCGAGATGACCAACCAGACCATCAAGCTTGGCGCCGGCCTGCGACAGGTAACTTCGTTTCGTGGTGGCAAGTGGGGCTTTGTGAGAGATTGTTAGGGATTAGGGTTTAATCAAGGGTTTATTGTTATGCTTATGAGTGCTCCCCGATGTTTGCAGGATTGCGACACCATACAGGCTACCAGTGCTGGGAGGCTACGGCTTTCGAAGCCCAGCAAATACTGGGTCGAGAGCTCGCAGAAGAGGGTGAGCGCTCCTGTTTGATCTCATATATAACACAATGGAAAAAAAAATGTTTGCCTCATGTGTGTCAACTTTGTCTGCTTGAGAGGTATATAGGGGTCCATGGATCGTTATAAGGACTAATGAGAATGTGAATTGATCAAATACGCTCACTGTGTCTGTATGGCGTGCTGCTTTATGCCCATGTATTGCTTTTCTTAGTGCGGCAGAAGGTTGTTTGCCCCTTCCTTAATGTTTCATGATTGAACAGAAAGATAATTATGTTGCTATTCCCACTATATTACCTTTGACACAGTATGCAAATTGGTTAGGTAGACGGCATATGCGTGTGCCATCCTGAGTTTATTTCCAGTTTAATGTTATGATTTGTTTCCCATGTGGAATGGGTTATGCTTGCCATGTTTTTAGCCTTTATATCTTCTCAACGGTAGAATGGGGATTTCACATAGTTCTTTACTCTCTTTGTCCTTCAGCGCTTAGCCTGTTCACTGGCTTTTATTCTTATTTCTTTTGCAGTATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGATGTAAGTACATTTATGTATATTTATGTAAATTAATTCTTCTATATGGTGCATTTTTTAGTATGTGGACCTAATTGTTTTGATACAATCACTGTTCTGTACATTTCAAATATACTACATGAACTGATATGGACTTCCACTAACTGTCTAAAATCTTGCTTTTAGTTTTGTCATTAAATGAGGCATCACGATGCACCTCATATGATATATTCTTACCTCTTTGCTGAGCTGGATTCTGTCATTACAGAACTTCTTGGTGGATATAAAAGGTCCTAATTTGGCCTTTTTACCAGTTCTTGCATTTGAAGGTGGTACCAGGAGAAATATTCCAAAGTTCGAGGTATGGCAGTGACTAATGGGTCATCATCATTCATCAATGGTTGTTGATTTTTTTTCCCCAACTCAATTCTTTCATAGGTTTTTGTCATGAAGTTCACTTTGGTATCCTGCTTTTATTGACTGCCAGCTTTGAGAACATTTTTCTTACTTTAGGTGGTCTATATACCATGATTTTGTGTTAGTAGATATACTTGAAATTATCTTAGTTTGAATAGCTATCATCTTAGTTTCAGAAAATAATGGTGAACTCAGTCTGTTATGATGTATAGGAGAATATTGTTTATTTCATTGAATAATTGTGTTCTTGCACAATGCAAATGTCAGGTTTCTCCTTGTTTTAAACTGCTACTGCCTAGAGTTATATAGCCAATATTTTCTGATGTTCTATGCAGTAACATGGGCTTAGATCTATAACTTCAACAAAGTGATATGTTGTTTGTAAAACACCTATCTTTCATTTTGATCAGCAACTCACTGATTTGTTGCTTTTCATCCTCCTTTGTCTTTGTACTAAAGAGGCATGTACAGCAGGCCCAATCTGTGCCTTACCCCATTGTATTCTCCTGCAGATTGGTACATTAATATATGCACGAGTGGTGAAAGCAAATAGCATCATGAACCCAGAGCTCTCGTGCATGGATGGTAAAACTATTATCTTACAACTCAGCATTGGGATTTTCTATTTTATACTAATCCATTAGAAGTACTCAAGTACATCTTTTGTTATTCTGTCACTCCTTTCTATATGATAATATTTGACCTTACATAATGACACCATTTCAGGCTATACTGTTATGTTTGAATTTGTCTAATTATTGCATTAGTTCTGTTACTTCAATATGAATATATTGCTGTGGCTTGTATTTTACAGCTACTGGGAAAGCAGCCGAATTTGGTCAACTAAAAGATGGCTATATGTTTGACACGTCTACTGGCCTGTCGCGGATGTGAGGACATTACATACTAGCATTCTTCAATGCAGTTGCATTATTTTCTTATATTTTGTAAATTGTTGCTTGTAGGTTGTTAAGTTCTCCAACATGTCCAGTTCTAGAGGCCCTTGGAAAAAAACTTTCATTTGAGATTGCTGTTGGCCTGAATGGCCGAGTGTGGGTATATGTCTTGATTATATCACTCTTTTATGTATCCTCTTTATCTTTGTTTCTTTGGAAAAAATATAAATCGCTAATGTCCTTGTAGGTTAATGCACCTTCTCCAAGTAATGTCATTGTTGTATCAAATGCGATTATAAAATCAGAATCTTTGAGTGGCATAGGGCAACGAAGTATGGTGGAAAGTCTCTTGGAGAGACTATCTTGATGGTAAGCAAACTTTTTTTTTTTGTCTTGGGTAAAAGTTTGAATTTGTGGTTCCCATTTTGCTTTAAATATTAACAAGTATAACATGGGGTCTTATCATTTTTCGTTACTTAATTTTAAATATTCATTCCCATTTATGTTTCTATGAGCGTATATATTTACCTTAAACAAAAACTTAAGCTGCGGTCAGTTTTACCTTGGGCTCTCTGCATTCTGCAGCTGCCCTCAGGTCCCTACTAAGATGAAAGCATACTTTGTTCTGTTGTTCGATTTCCCATTTATTTGTTACTATCATGCAACCACCAACTTTGAGGTTGATATGACAGCTTCCTTTGTCATGTTAGCTAGATCTGGATTCCTAGGTCCCTTACGAGCATTCTTCCTTATCTGTTATTGTCTCTCTTGATTATTAGCCATAGCCCACAAATTATGTAGCCTTCACATCATGTTATACAAAAATATGTTGTCATGTATAGCGTAGGACTACTACCTCTAATCTACACCTTTATGCTCATTTTTCCTTATCATTATTATTTTGTGGGTACACTGTTCTCTAGTCAGTGTAGGGAGAACCGACTGGCAGTACTAATGAATCTTAAAGGAATTACTGGTTAGACGTCAGCTATGATTCTGCAAACCGGAGAAACGGCACTATAATCGTGTTATCTCAACAGGGAGCGGTAGAAGAATGTACACATAAGCAGGTACATGAAAGAAGTTGATGCGTTTTGATGTCTTATATATGAAGTTAACTGGATGATTCCGCTTATGAAACTTCATAGAGAGTTTTGTTCCAATCATACGTGATACGCTGGTTTGTAAGATGTCCTGGGATTTGCACAAGGTTACTTGCTGATCTGCTGGAAGATGATTGGTGGGTGATATTGAATTTCTCAGATATATGGCGTGTGAATTCCCCATCTGTATAAACTAACATATCAGCTGAACTAGTACTTCTCAAATGATAATTTAGCTCCCATCTTTAAGTGACCTATGCGTGACGTTGGGAGAATTTAGCCACATATGCCTCGCAAGTCGCAGACTATCGCCTTCTCAATCCGGGATGACAAGTGCAACAGGTGTAGAAAAGGTTCGAGCTTAAACTTCCGTACCCTTTGTTTAGTTTCAAACTATTTCTTCAAACTTCTAACTTTTTTATCACATCAAAATTTTCCTAGACATAAACTTTCCACTTTTCTGTCATATCGTTTTAATTTTAACTAAACTTTTAATTTTAGAAGAACTAAACACACCAAGTTGTTTCTGTTTTCCGAACTAAACACACCCATAGAACAAGAAACTGCCTCGTCACCGTAGCTTATCTACAAAGAATTTCTTGTACGGCTAGGACAGCCGACATGCTTTCTTTTGCCCCCTTCTTTTTTTTCACTTCCCACTCTCAGCCGTCCGTCCCGTGCTCTCACGTCATCAGGCATCCACCCGCCTCTCGATTGATTCCCCGAGCCGAGACGGCGAGACGAGACGAATCCACCGCATTTTTCCGCCGCCCCACGCCCCGCACCGCACCCGGCAGGCCGGCGCCACCACACCACCGCGCGCGTCGCTCCCACGCACCGGCACGCAACCCCACGCCGGCGGCGCCCCGCCGCGAGCGTGACGCCCGCTTCCCGCTTTCTTGTGCTTCCCCCCTTCGACACCTCGACTTGCTTTTCGTCCCTATCTTGAATTCTCCTCTCTCTCAATCGCTTCGCCCACCCGCTTGTCACGCACGAGCCCGGCCAGCGTGACGACGCGTGTGCGTGTGTGGGGGCGTGAAATTCTATAGACGGCGCCGCGGATTCGGGTTCGCGTCCTTTGCGCTTGCGGTAAGAACAGCGCGCGCGCGCTCGCCTTTCCCCTCCCTCTCTCTCCCGCGTCCCTTCTCCAATCCTTGGCCCGAGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGGTGAGCCTCTCTCCCTCTCAAAAGGTATCGATCGTTGGGGAATCGGTTTTTCCGGTGGTATTCCGCTGGCAGGTTCATGTCGGGTTGAGAGAGGAATCGTCGGTATAGCTCGCTCTGTGTTGCTGCTGCCGCTGGGTGGTTTCGTGCTGTCTTGGTAGTTAGTAGGTGGCAAGGAGCAGTCACGTGGATTAATCTAGTCCGGGATGGTTGGGTACTTAGTTTTAGCTTTCTGAAGCAATAAGGTATCCTTGCAAGGCTGGTGATGCAGTGGTATCAGTTTGTAGTGGTATTATGTGTCATTTGTTTATAGGATTAATGATAAGATGGCACGTTTTTGTTGGTTTGCTTAAGCTGTGGTTGAAACCGAACCATTCTGGAGTTGTTGAGCAGCTCATGAAACTCCCGCCACTGATGTTCTTCATCAGCTTTCAGTTTATGTCCCAATGGATAGCATGCCTTTTGGAAATAAATCGGCTGATTCGACTTCCTTTTCAAAGAAATCCCTCTTGTATTTGATTTTGTGCGTTTATATTCGTTTGAGATGATCTGATCTGCAGGTCGAAGTCTGGTGCCAAGACCTAGCCATGGGTGGCAGGAGGTATACAATACTGGCCTCATGTGCATCTTCCTTGTGTGGTTGTATTTAATATTATGCCATCATGATATATTCAGTGCTAAATGGCAGAGTTGAATTCAATGCAAATAAATGTGGGACGCATCCAACGCCAAGTAAACCATATTATGTGGATAAAATCGATACCAATGAACAAAAGGTTGTCCACTATCAAGTTAATTGTAGACCAGCAAGAGATCGCAATACCGGTTCCTACTCTGTGAAGCACCATTACCCATCTCCTATTGTTTCTTGGATAGAAGACCTTTCGAGCTTCGGCAATGTTTCTTTTAGCCAGGATCCTGAATATGCTGATGAGCAATCAAGATCTTCAGTGGGGCAGTCTTCAGCATCTGTCAATTTGCATGACATGCAGATAGTACGTTCTGCTTCCATTATCATCCCTTTGTCTCGATTTGTGATGTCACTACGAAGAAACTGGAGTTTAAGATGAAATAACTGTTTTATGCATGTTCTTCAGTCAGTTAGATTGACAGATGAATTCATCGAACTTGCAAAGGAGAATACAGGCAACAATGTAGAGACTTGTGGAATCCTAGGTGCTTCATTTGTAAGTCCCTTTTAGATGAATTTGTAGGTTCGCTTCACAAAATGGTTTGCCAATATGATAATCATACCTATTTTTGGATTTGCATTGTGATCTTCAATGCTTCTTTGCAGAGAGATGGGACTTACTATGTGACTATGTTGATCATACCAAAGCAAGAAGCAACTGCTCATTCTGTACGTCAGAAATTAAACTGTTTTGAAACATAGATACATTATTAAATATTAATACATCATAGCCATTTTTACATATTTTGTGCACGCATATCTGGTTGTCACGCTCTGAAGCGGTGGTTTATCTTCCCAAATGCAGTGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATGTAACACTCGCAACCATTATTTACCCTTTTGTCTTGATATCCTTGGAACTTTCATATTATCAAATCCAACTTAAAATGGAACCCATGCATGACCTTCTTGATATGTTCATATATAATGGTTGTTTTAGTTAGCAGCTCACAGATTGATTTTTTTCATTATCTTTTCCAGACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAATACTCCTACCAGGTAATTATATGACAGATAATAATGTTTTGTCTCAAAATAAATGGTGTATCAATAGAAAGTTCAGCTCTTATCAATTTATAAAGGATGGTATGATACTTTGATGCACTGATATGCATCAATTTTTTCCTATTATAGATCTTGTGATTTTAATGTACATAGTCCGATTCTAGAACGAAAGCTGCAAACTCTGAATATATTACTGTTCATGATCTTTAAGTGCTCTCATATCAGTGTTGTGCGCCTCATCTGACAAAAAGGATTTCTATTGGTGTGAAGTTTGTTTAGCAAGCTATCGTAGGGGGCTATGGAGTCATGGAATCACATGAATAAAATGGCACCAAAGCTCAAGAGAAAACATAACAAGACTTAACACACCACCCTGACATCTGCATACACTATCTATGGTGCTATCCTTAGTTGAGCAGTTGTAGTTAGGCTTATAGAATAAAATAATCAAAGGTATGCATTATTATCATTTAAAAAGGCCTTAGGTTCCTTATTTGCATTAAAACTTTGCCTGCAGTAAGACATGTAAACGAAGTTAATTCAGTTGGTGAAAGCACGACCAAATCTTTTGTGCTTTTGGCTGTATTCTAATCTAGCTAGGAATTACTAGCCACTACTGCAATTATTAATCTACTAGCTCAGGACGACTTTATCAGAAAGAAATTTTGGTTTGCTTTGTCATTCCTCTAATTCTGGTAGACATAAAGTGCTGGATTTCTTCAGGTTATGTTACCAGAGGCCGTTGCGATTGTGATTGCTCCCACTGATCCTACTAGGCAAGTATTCTATGGACGGTTGTACAGTTTCAATTTATTATTCCTTTTGCTTTTGGTGGTGTCCCCTGCCAATTTATTATCACTTACAGTGAAATGCATATGCTCTCAAATCCTTTAGGAACTGTGGAATATTCAGGCTGACAGACCCAGGAGGGATGGGTGTGCTTAGGGAGTGCAGTGAAAGTGGGTTCCACGCCCACCGGGAGACAACGGACGGCGGCCCAATCTATGAAACCTGCTCCAAGGTTATATTCAACCCAAATTTGAGGTTCGAGATTGTTGACCTGCGTTCCGCTCCCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004150