BGIOSGA004187

From RiceWiki
Revision as of 11:02, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA004187| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA004187, complete gene.| tag = OJ1117_...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA004187

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA004187, complete gene.

LocusTag

OJ1117_G01.6

Ensembl Transcript ID

BGIOSGA004187-TA

Ensembl Protein ID

BGIOSGA004187-PA

Length

5637

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:31014740..31020376

Sequence Coding Region

31014740..31014836,31014945..31015077,31016699..31016770,31017270..31017413,31017498..31017620
,31017732..31017787,31017879..31018265,31018806..31018996,31019128..31019260
,31019345..31019499,31019818..31020009,31020116..31020376

Genome Context

<gbrowseImage1> name=IndicaChromosome01:31014740..31020376 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:31014740..31020376 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTGGAAGATGGTGGACGCGCTGCTGCGTTGCTCTGCGCTCGTCGCGCTGGTTCTTCATTTCGTCGTCAATGGCTGCTCGGCGGTCAACACTGAAGGGTCGGCGCTGCTCAAGTTTCAGTCGAGGGTGGAGGAGGATCCGCATGGCGCCATGGCAGGTTGGAGCGAGCGGGATGGCGATCCTTGCAGTTGGAACGGCGTCCGCTGCGTGGATGGCAGGGTGGTGATTCTGAATCTAAAGGATCTCTCACTAAGAGGTACCTTGGGTCCAGAACTAGGAAGTCTTAGTCATCTGAGGGCTCTTGTACTCTCCAACAACTTGTTCGATGGACCAATACCGAAGGAAATGAGTGATCTTGCAATGCTGGAAATACTGGATTTAAGCAATAACAATTTGACTGGTGAAGTTCCGCAGGAGATAGCAGAAATGCAATCAATTAAGCACTTGTTGCTTTCCAACAATAACTTTCAATGGCCTCTCATCCAAAATTCCTACAGGAATTTTGATCAGGAAATTGATTTTGACGTCTATGATGAGAGGGGCGATGTGGATCAAAGATCTGAGAATGGATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCTTTCTGCTCGTCTTTCTTCACAATTTGCTGCAAGAAATCCAACTGTACAACTTAGCCGGCGCAGACTATTGGAGGATACCAATCTTGCTGCAGCTTCAGCAAATGCTCCTGTTCCAGCTGTTGCTTCTGTTCCTTCTACTGGAACTGGATCATTTTCAGCATTTAAGGAAATCAAGGTGCCTCCACCACTAAGTCCTCCAAGTAGTCCACCCATGTCCAGTGGTCCTCCACAAAGATCTAAGAGATGGTTGTATGCCATTGTGATTTCATCAATCGCTCTGCTGCTTATCGGCATAGCATGCATGTTTTTGCTATGCCGCAACAAATCAGTGGCGACAATAGGTCCATGGAAGACTGGGCTCAGTGGACAGCTGCAGAAGGCATTTGTGACAGGAGTACCAAAGTTGCAGCGCTCAGAGCTGGAAGGTGCTTGTGAGGACTTCAGTAACATTGTCGCAAGCTATCCACACTACACTGTATATAAGGGAACCTTATCAAGTGGCGTTGAGATAGCTGTTGTATCAACTGTTATTGCGACTAACAAAGATTGGTCGAAGCATTCCGAAGGGAGATTCAGAAAAAAGATAGATTTGCTCTCACGAATTAATCACAAGAACTTCATCAACCTGCTTGGGTACTGTTTGGAGGAGAATCCTTTTATGAGGATGATGGTGTTAGAATATGCACCCAATGGAACACTCTATGAGCATCTCCATGTTGAGGGATTCGATCATATTGATTGGAATGGTAGGATGAGAGTAATTATGGGGGTAGCATACTGCATCCAACACATGCATGAGCTGAACCCTTCTATCACACATCCTGACTTACATTCAAGTGCCATATTGTTGTCTGAGGATGGAGCTGCAAAGGTAGCAGACATGAGTGTTTGGCAAGAAGTGATTTCTAAAGGAAAAATGCCCAAGAACGATGACATTGTTGATCACCATGAGCCTGTGTCTGCCGATCCAGCTGGGAACGTGTGCAGTTTTGGTCTACTCATGCTGGAAATCATCTCAGGAAGGCCTCCATATTCTGAACACAAGGGCTCCCTTGCGAACTTGGCTATGGAGTGCATTAAAGATGACCGGAATATATCATGTTTGCTTGATCCTACCTTGAAGACTCACAAAGAAAACGAGCTAGAAATCATCTGTGAGTTAATCCAGGAGTGCATCCAAAGCGACCCGAAGAAGAGACCAGGCATGCGAGAGGTCACCACTAGACTGAGAGAAGTTCTAGCAATCTCACCGGAGGCAGCAACGCCGAGACTGTCTCCACTTTGGTGGGCAGAGCTTGAGATCCTTTCGGTTGAAGCAACCTAG</cdnaseq>

Protein Sequence

<aaseq>MWKMVDALLRCSALVALVLHFVVNGCSAVNTEGSALLKFQSRVEEDPHGAMAGWSERDGDPCSWNGVRCVDGRVVILNLKDLSLRGTLGPELGSLSHLRALVLSNNLFDGPIPKEMSDLAMLEILDLSNNNLTGEVPQEIAEMQSIKHLLLSNNNFQWPLIQNSYRNFDQEIDFDVYDERGDVDQRSENGFESDSSSEENTKDNNNLSARLSSQFAARNPTVQLSRRRLLEDTNLAAASANAPVPAVASVPSTGTGSFSAFKEIKVPPPLSPPSSPPMSSGPPQRSKRWLYAIVISSIALLLIGIACMFLLCRNKSVATIGPWKTGLSGQLQKAFVTGVPKLQRSELEGACEDFSNIVASYPHYTVYKGTLSSGVEIAVVSTVIATNKDWSKHSEGRFRKKIDLLSRINHKNFINLLGYCLEENPFMRMMVLEYAPNGTLYEHLHVEGFDHIDWNGRMRVIMGVAYCIQHMHELNPSITHPDLHSSAILLSEDGAAKVADMSVWQEVISKGKMPKNDDIVDHHEPVSADPAGNVCSFGLLMLEIISGRPPYSEHKGSLANLAMECIKDDRNISCLLDPTLKTHKENELEIICELIQECIQSDPKKRPGMREVTTRLREVLAISPEAATPRLSPLWWAELEILSVEAT</aaseq>

Gene Sequence

<dnaseqindica>1..97#206..338#1960..2031#2531..2674#2759..2881#2993..3048#3140..3526#4067..4257#4389..4521#4606..4760#5079..5270#5377..5637#ATGTGGAAGATGGTGGACGCGCTGCTGCGTTGCTCTGCGCTCGTCGCGCTGGTTCTTCATTTCGTCGTCAATGGCTGCTCGGCGGTCAACACTGAAGGTTAGCGGCGGCGGCGGCGGTGGCGTCTCGCCGGTGTTGTGGGCTGCGTTCATTATTAGGTCTGTGGGTGATTGATTGGGAGCTCTTCTTGGTTGCTTGTGGTTGCAGGGTCGGCGCTGCTCAAGTTTCAGTCGAGGGTGGAGGAGGATCCGCATGGCGCCATGGCAGGTTGGAGCGAGCGGGATGGCGATCCTTGCAGTTGGAACGGCGTCCGCTGCGTGGATGGCAGGGTGGTGATTCTGTGAGTTCATTGTCCTTCCTCTTTTATTCTTCTGAATGTGCAGTGATTCTGATTGGAAATGCAGTTTACCCATTCGATCAAGGATCATTGTTGCAAAATGTAGCAGGTTTTCTCTCTTTGATGATCCTCCGTTTGACTAAAACCATTCTGTTGAAGAGTTGCGTTGATTTATTGTTAAAATGGACGTTCCTTCCCCACTACTTTTCTCCTCTGATCTATGTGCGGTTTGACTTGAGAATACATGTTAGAAAATGCAGCAATGCTTCAGTTGAATTTCTGGCAACACAAGCATCTATCAACTTTATAGCCCAGAGAAGTTAGATGTGCAATGATTGACTTGTTGTATTTGATAACAGAGCCTCCTTGGCTCCTTTGGACTGTGGGATTTCTCCGGATTCTTGTGAAAATCCTTTAGATTCGTGCAAAATGGTCCTGCGTTCTAAAGGAGGCCTTGGTGCAATCAGCTCCTCTTCCAGCCAAACAGTCAATACAAAGCATCATACACAATATTAATTCCGTCCCATTTTGATTTGAATTCTTATTTCTTTGATACATATACAGTATTCAGAATGTCCATAAAATGTGTTGTAAAAATTAATTTTCCCTTTAGAAGCCTGTATGGAAGTTTAAAACATAATGTTGATATCATTATTTGGTTTATTTAAATGGTTTCTTGACTCAGCCAATGTGAACAAGTGGCCAGATGGTACATTCAATTCTGTGACAGGGAGATGTTGACTAATAAAGTGAGATTATCGACTAAAACAATTTAGTTGATTCTTTTAAATTGTAATTATATTGGAGGCCCAAAATAGAGGCTAACATTGGTTAGCTTGATACTTCAGCAGAAGGTCAAGTATAATCACCATCAACTGAACGTTGTGATCTGCCTAGATAAGACTGCTTAGTAGGGCCATATGTTCATTGAACATCCTTATGTGTCAGCGCTCATATCTAGAAAGCTTTTCTTAGGCAGCACATTAAGAAAGTCAAACTAATGCTGTTTGGCATGCTTCACGCTTATATACTATTCAATAGGAAAACTGACATTTCCATTCGTAGTTCTAGATCCCTAACATATTAGTCTAGCAAATAAAAGGTTTGTTCAATACTCTACATGTACTTCAACCAAGCACAATAGCAGCCCTTTTTCTTTCCTGATTACAAGGTAGGCAGACACACACGGACATTGCCACTCACACCACACGCAGAAATGCACTATTGTGTGTGCTTTGAACTCTTTCGATGTCAAGATTTGCTATCAAGTGCCTCAGGATGTGTGACAGGTTGAGTTTCATACACCAATCATCTCATTCAGAAGTTTAAGTTACTAGGAAAAGAGACATCATTTTCTGCTCATAGAGCTTTGGAGTAGTCCCTTCAGTGCTACTTAATATTGATATTTTTACATGAAAACACCTTAAGGTGATTCTCCGACTCACTAGGTTAATAATTTTTTCTTCTCAAGATGATCTATTACAGAAAAACTCATGTTCAGATTCTTGTGTTTCACTATATAAGATTCATTTATAATTGCTGCAGTGTTTCTACATATTTTGAGTGGATAATGGTTGCTTTAACATCTTAAGAATTGTACTTACTATGAACTCTCTTTCTGTAGGAATCTAAAGGATCTCTCACTAAGAGGTACCTTGGGTCCAGAACTAGGAAGTCTTAGTCATCTGAGGGCTCTGTAAGTTATCTTGACTTTGCTTTAAAGAATATACATTGGACATCTTTTGAATTGGATTTCTTTAAGATCTAGTAACGAGAAATTACTATAGATAAATATATTAATTCTTTATCGGTTGATGCTTGACTAGCTTATTCAGTTTGTCTTCCAGGAACCAGGTGTCTAAATAAGTCAATTACCGTCAGTAAGGACATCTGAAGCATATGTATCCAATTAAATGAATATTGGTTTCAATAGGCCATAATCAAATGGTGTAGTTCATATCAACTAAACTCCGTGCTAAATAAAAATGAGACTAAAATGCCACATGAATACATTGTGCATTTGTGTGAGTAACTGAGGAGTTTACACAGTAGCATAAGATCTTGGCTAATCTTTTGATGGGGCATCCATTACTTGAATTACTAGAGCTAATGAGTTGTAACACTGTAATCTTACTCCTGAATGTGATTTGAGTGTTTTCTACAACATTTTAATTCAATACCTGGCTCACTTGCAGTGTACTCTCCAACAACTTGTTCGATGGACCAATACCGAAGGAAATGAGTGATCTTGCAATGCTGGAAATACTGGATTTAAGCAATAACAATTTGACTGGTGAAGTTCCGCAGGAGATAGCAGAAATGCAATCAATTAAGCACTTGTAGGTCGTCTGACTGATTAACTTTGCCAAAATTTGACCAACATCAAATAATATAGCCATGATATATTTTCTACTGCTCTGCAGGTTGCTTTCCAACAATAACTTTCAATGGCCTCTCATCCAAAATTCCTACAGGAATTTTGATCAGGAAATTGATTTTGACGTCTATGATGAGAGGGGCGATGTGGATCAAAGATCTGAGAATGGGTAAGAAGAATTAGATTGATATACATTCTGGTCAATACCAGTTTTTTATTTTTATAAAACAAATTATCAGTGCGTGTTGATGGTAACAGTTGTGAATGTGAACCATTGTAGATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCTTTCTGGTAATTTAACCTGCTCTTATCTTTTTCAAGTTTGTTCATAGAACCCTGTATACATTAGCTAGTACATAACATACCTTCATCTTTCGACCAGCTCGTCTTTCTTCACAATTTGCTGCAAGAAATCCAACTGTACAACTTAGCCGGCGCAGACTATTGGAGGATACCAATCTTGCTGCAGCTTCAGCAAATGCTCCTGTTCCAGCTGTTGCTTCTGTTCCTTCTACTGGAACTGGATCATTTTCAGCATTTAAGGAAATCAAGGTGCCTCCACCACTAAGTCCTCCAAGTAGTCCACCCATGTCCAGTGGTCCTCCACAAAGATCTAAGAGATGGTTGTATGCCATTGTGATTTCATCAATCGCTCTGCTGCTTATCGGCATAGCATGCATGTTTTTGCTATGCCGCAACAAATCAGTGGCGACAATAGGTCCATGGAAGACTGGGCTCAGTGGACAGCTGCAGAAGGCATTTGTGACAGGTAAATATTTTATTTCTTCTCTGATCTGTCTGGATAAAAATGTGCATAATCATCCTGTTATTTTGTTTATTATGGTCAAATATGAACTTCAGAGCATTTTCTATCATATGCTTTCTACTGTTGTTTTACTTTTCTTCAGATATACCTAATTTTTAATCATTTATTTCTAAAGGATAACATGGATTAGCTAAATTAAATAATTGGGATGCAGAACTCATTAATTTTGTAAAATTTTCAACGTCAGTTTATATTTGAACAAATGCAACACCTGTTTTTGTGGGCCATAGATATTTATCTCCTTTACAAATAAAAGTATGTGCAAGGCAGAAATAATATCAAGCAATTGTTAATAGGAGATATAAGATATATAAAAATGGTTCAAGATGAGATTATTTGATCATTAATATTTCTGCAAAGTTTAGACTTTAGAGGAACAGATATTTAGCTTCATTGAGCTCTCCCTTTTCAAAGATCGTCAAATATCCAGTTGAATTGCCTCTTATCATTTGTTGCAAATTGTGGTGCCTTACTGTACTGCAGGAGTACCAAAGTTGCAGCGCTCAGAGCTGGAAGGTGCTTGTGAGGACTTCAGTAACATTGTCGCAAGCTATCCACACTACACTGTATATAAGGGAACCTTATCAAGTGGCGTTGAGATAGCTGTTGTATCAACTGTTATTGCGACTAACAAAGATTGGTCGAAGCATTCCGAAGGGAGATTCAGAAAAAAGGTAATATAGTGTTATTTATTGTAAGGATAAAAGCACCCTGCTACTAAAGTTTGTAATGTTGGTCTAGTTTACGAATAAAAGGTAGTTTGGAAAAAGGTTGTTTCTTCTAACTTATTTTTCTGAACACATAGATAGATTTGCTCTCACGAATTAATCACAAGAACTTCATCAACCTGCTTGGGTACTGTTTGGAGGAGAATCCTTTTATGAGGATGATGGTGTTAGAATATGCACCCAATGGAACACTCTATGAGCATCTCCATGGTAAGAGCCTGTTAAATGCTGATTCCACTGCTAAAATGTTTGTTCTTTATGCCAAATTAAATTGGTTTTATTTCCTTTTTGCAGTTGAGGGATTCGATCATATTGATTGGAATGGTAGGATGAGAGTAATTATGGGGGTAGCATACTGCATCCAACACATGCATGAGCTGAACCCTTCTATCACACATCCTGACTTACATTCAAGTGCCATATTGTTGTCTGAGGATGGAGCTGCAAAGGTACAAATATGCTTATGGAAATTTCAAATTGTATTTGTTCTAGTTTGTGGAGATCTTCACAGGATTGTCCAAAATTTCAGTAATATGAAAACAAAAAGGAAATAGTGTAAGATCAGAATTTCAGCTTCTAAACCATTTTTCTGGACATTATACCTTCAATTTAGAGTCACATTGTTTGGAAAAGCAAACTGGATAAAATGTTTGTCTACATCACAATTGAGCAATATGAAGTACTCCCTAGTTCGTTTGCACAAACACTTTAGTTGTAATATCAGACTACATGTTTATGCTTTCCTCTAAACCGAGTCCTTTTCGCAGGTAGCAGACATGAGTGTTTGGCAAGAAGTGATTTCTAAAGGAAAAATGCCCAAGAACGATGACATTGTTGATCACCATGAGCCTGTGTCTGCCGATCCAGCTGGGAACGTGTGCAGTTTTGGTCTACTCATGCTGGAAATCATCTCAGGAAGGCCTCCATATTCTGAACACAAGGGCTCCCTTGCGAACTTGGTAAGGATGACAATTAATAAATCGAGTGTAGTTACTAAAGTCGTTGCAACTTCCACAAATGGGATCTTGAAGCAAATGTTGCTTCTTTTTTTCCGTCTGGTGACAGGCTATGGAGTGCATTAAAGATGACCGGAATATATCATGTTTGCTTGATCCTACCTTGAAGACTCACAAAGAAAACGAGCTAGAAATCATCTGTGAGTTAATCCAGGAGTGCATCCAAAGCGACCCGAAGAAGAGACCAGGCATGCGAGAGGTCACCACTAGACTGAGAGAAGTTCTAGCAATCTCACCGGAGGCAGCAACGCCGAGACTGTCTCCACTTTGGTGGGCAGAGCTTGAGATCCTTTCGGTTGAAGCAACCTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004187